TCONS_00057837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057837
Unique NameTCONS_00057837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057837 ID=TCONS_00057837|Name=TCONS_00057837|organism=Clytia hemisphaerica|type=transcript|length=332bp
gaaaaaatgccaaaaggcAGGAAACTGAAAAGACCAAAAGAACATGaaac
tgaaaacaaacaaaactgcAGCTGATGCTGTAACACTCCCCCCACTAaaa
tattgaattgaaaaatatatttgtatttgaaaaaacaatttatttgaatt
ttccCATTGATCATATATTCAAGTTGAACACTTGAGAAGTTCTTTAGATA
GATCTAGTTCATCAACACAGTGAATTAATATCAGTGATCTCACAGATCTT
GTAGTCAGACGTTTTACATTTTCAGATGAATTTTGGTATTCAACGACAAC
TTTTCGTATTTTGTCATCACGATCCACTTTCA
Run BLAST on NCBI

transcript from alignment at scaffold_299:15514..15845

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057837 ID=TCONS_00057837|Name=TCONS_00057837|organism=Clytia hemisphaerica|type=transcript|length=332bp|location=Sequence derived from alignment at scaffold_299:15514..15845 (Clytia hemisphaerica)
TGAAAGTGGATCGTGATGACAAAATACGAAAAGTTGTCGTTGAATACCAA
AATTCATCTGAAAATGTAAAACGTCTGACTACAAGATCTGTGAGATCACT
GATATTAATTCACTGTGTTGATGAACTAGATCTATCTAAAGAACTTCTCA
AGTGTTCAACTTGAATATATGATCAATGggaaaattcaaataaattgttt
tttcaaatacaaatatatttttcaattcaatatttTAGTGGGGGGAGTGT
TACAGCATCAGCTgcagttttgtttgttttcagtttCATGTTCTTTTGGT
CTTTTCAGTTTCCTgccttttggcattttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036457XLOC_036457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057837-exon-scaffold_299-1491911889:15514..15845TCONS_00057837-exon-scaffold_299-1491911889:15514..15845Clytia hemisphaericaexon
TCONS_00057837-exon-scaffold_299-1510915933:15514..15845TCONS_00057837-exon-scaffold_299-1510915933:15514..15845Clytia hemisphaericaexon
TCONS_00057837-exon-scaffold_299-1575043694:15514..15845TCONS_00057837-exon-scaffold_299-1575043694:15514..15845Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_299supercontigscaffold_299:15514..15845 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.98278	2.15599	0.979726	1.80177	3.88964	2.15155	1.48329	1.7358	1.94444	2.29847	1.16887	0.960465	1.72643	0	0.655121	1.05457	3.46438	0.887718	1.22643	0.641686	3.33421	1.63228	0.661417	1.80397	0.929024	0.552755	1.97748	1.26625	0.64027	0.326167
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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