|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057838 ID=TCONS_00057838|Name=TCONS_00057838|organism=Clytia hemisphaerica|type=transcript|length=1657bp
Gggaccctactttcatgcaaaaaatcagaaaaaattaatgatccaatttt
tcactaagtccaaaaaacctgtttttttaGCCGTTTGTTGACCCAAATTT
aacccccaaatttttttttcgaaaatcgggctctgtcacattttggccat
caccattttgcacctttgtaccaaaaatcaaaagattcctatgattcaat
cctgagaaaagttggtaacagacgaacgaacgaacggacgaacacaggtt
aattcataggacctccaccccaccggggtaggtccaaaaaagaaatcaag
tatagctttttctaacaaAGGATTATCGAAGTTCCACCTACACTGATGTT
TACATTCAGATGTTTACATTCAAAAATAAATCGACTACCACcagaaaagt
ttcaaaacatgGTACAGCATACCTGAAAAAAGTGGGTCCAGTTCCCTGGA
AAGGATATAATAATaacatttccaaatgaattatTCTTACAATAGCATTT
GTCTTAtcacaaatccaaaaatataGGTTATAAAATCAACACGGGTGTTA
CAACAAACCGTCAAATCGAACTTTATATAGatcaaacatttaaaaaatat
cactTGTTTTCATAATACTTGAATTATATTATAACCTTAATTTTGTATAT
ATTTGATTCCTTAAAACCATTTATCTTTCCCACAGCAGGCTTCAAAGTTT
ATGTTGATCCCTGTTTTTTTTAGGCGGTAATCTAGAAAGGCCTTTGGTGT
AGcaaaaacaaatgatttcattactgtagttaaaaaattgtcaaaacatC
ACGCTGCATCACATGATTATAATCATGGTCAGAGCGAACGGAAGCCATGG
TCATACATCGTCTTAATTTGGCAAAGTTTAGTAAATTCAACCatgtatca
atgttttgatttttcaagcgggatttctgtagaatgataaaaaatggtTT
GACTGGAAATAACAGCAGAACCCCCAtgatagaagatctttcaaattcag
tatgtgaatagagccaGATAGACAGTataaaatacaacttttctattttt
ccagaaatcaaaaaaaaagttatacagtATATGATAATtgattatctgat
attccgatggcaaTATTCTGCCcagctaaagctctaaaggagcagGCAGA
ATTCCCCATCAGAGAGAAATGATGATTGACCTTTGATGTGCTCTTTCCCC
CGTCAGGTTCAATACCCTAGTGTGTAAAGCCTAAAATCGTTTTGGTTGGA
CCCACCGATCCCTGAGAACAAGGACTGAGTTACCAAGCCTCCCACTGCAA
AATCcagtcttgcaaaattccggaGTAAACGTTCCAAATttagcatgtag
cttgttttctttttatgaaattttgaaatgttgctgctttggttggtcaT
GCATTTGATGGATAtacaagtttccctccacaGATGCAAGTTACTCAACT
TTACGGTACTCACGGACAGAATTGCAGGtgaataaaaaagtgtagttGGA
TTATTAAAACTCATGGGAAAtcataaatttcaagataacGGGAATTCAGA
CGTTTCTCAATGGCTGCTGGACGTGTAAACTCAAATTTAATAATGATATT
aaacataattatgcatgacatcCCTTATGATTAGGAGATTACTAATTACT
AGTCACT Run BLAST on NCBI transcript from alignment at scaffold_299:18942..20598 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057838 ID=TCONS_00057838|Name=TCONS_00057838|organism=Clytia hemisphaerica|type=transcript|length=1657bp|location=Sequence derived from alignment at scaffold_299:18942..20598 (Clytia hemisphaerica)
AGTGACTAGTAATTAGTAATCTCCTAATCATAAGGgatgtcatgcataat
tatgtttAATATCATTATTAAATTTGAGTTTACACGTCCAGCAGCCATTG
AGAAACGTCTGAATTCCCgttatcttgaaatttatgaTTTCCCATGAGTT
TTAATAATCCaactacacttttttattcaCCTGCAATTCTGTCCGTGAGT
ACCGTAAAGTTGAGTAACTTGCATCtgtggagggaaacttgtaTATCCAT
CAAATGCAtgaccaaccaaagcagcaacatttcaaaatttcataaaaaga
aaacaagctacatgctaaATTTGGAACGTTTACtccggaattttgcaaga
ctgGATTTTGCAGTGGGAGGCTTGGTAACTCAGTCCTTGTTCTCAGGGAT
CGGTGGGTCCAACCAAAACGATTTTAGGCTTTACACACTAGGGTATTGAA
CCTGACGGGGGAAAGAGCACATCAAAGGTCAATCATCATTTCTCTCTGAT
GGGGAATTCTGCctgctcctttagagctttagctgGGCAGAATAttgcca
tcggaatatcagataatcaATTATCATATactgtataactttttttttga
tttctggaaaaatagaaaagttgtattttatACTGTCTATCtggctctat
tcacatactgaatttgaaagatcttctatcaTGGGGGTTCTGCTGTTATT
TCCAGTCAAaccattttttatcattctacagaaatcccgcttgaaaaatc
aaaacattgatacatGGTTGAATTTACTAAACTTTGCCAAATTAAGACGA
TGTATGACCATGGCTTCCGTTCGCTCTGACCATGATTATAATCATGTGAT
GCAGCGTGatgttttgacaattttttaactacagtaatgaaatcatttgt
ttttgCTACACCAAAGGCCTTTCTAGATTACCGCCTAAAAAAAACAGGGA
TCAACATAAACTTTGAAGCCTGCTGTGGGAAAGATAAATGGTTTTAAGGA
ATCAAATATATACAAAATTAAGGTTATAATATAATTCAAGTATTATGAAA
ACAagtgatattttttaaatgtttgatCTATATAAAGTTCGATTTGACGG
TTTGTTGTAACACCCGTGTTGATTTTATAACCtatatttttggatttgtg
aTAAGACAAATGCTATTGTAAGAataattcatttggaaatgttATTATTA
TATCCTTTCCAGGGAACTGGACCCACTTTTTTCAGGTATGCTGTACcatg
ttttgaaacttttctgGTGGTAGTCGATTTATTTTTGAATGTAAACATCT
GAATGTAAACATCAGTGTAGGTGGAACTTCGATAATCCTttgttagaaaa
agctatacttgatttcttttttggacctaccccggtggggtggaggtcct
atgaattaacctgtgttcgtccgttcgttcgttcgtctgttaccaacttt
tctcaggattgaatcataggaatcttttgatttttggtacaaaggtgcaa
aatggtgatggccaaaatgtgacagagcccgattttcgaaaaaaaaattt
gggggttAAATTTGGGTCAACAAACGGCtaaaaaaacaggttttttggac
ttagtgaaaaattggatcattaattttttctgattttttgcatgaaagta
gggtccC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057838-exon-scaffold_299-1491911889:18942..20598 | TCONS_00057838-exon-scaffold_299-1491911889:18942..20598 | Clytia hemisphaerica | exon |
| TCONS_00057838-exon-scaffold_299-1510915933:18942..20598 | TCONS_00057838-exon-scaffold_299-1510915933:18942..20598 | Clytia hemisphaerica | exon |
| TCONS_00057838-exon-scaffold_299-1575043694:18942..20598 | TCONS_00057838-exon-scaffold_299-1575043694:18942..20598 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_299 | supercontig | scaffold_299:18942..20598 . |
Blast
The following BLAST results are available for this feature:
|
