TCONS_00057839 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057839
Unique NameTCONS_00057839
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057839 ID=TCONS_00057839|Name=TCONS_00057839|organism=Clytia hemisphaerica|type=transcript|length=280bp
CTTTCATCTTCATCTAGTGTTTGTTCTTCCAATACTTCAAGACAATTTTT
GCAAAATGCGTGACAGCATGGTAGTTCTGTGAATTCTTTGACAATATTGT
GACAAAAACCACATTCATAAGCACTAGCAATATCTTTGTCTTGTGCTTTA
AAACCATACCCATGTGTATCCATGTCTATATTTAATAATAATCAACTTGA
TCAATGAGTTAGTAATTGGcatcttttatttgttttgtttgttttttctt
tctattatcatttttttgtGTAGTTCAGTA
Run BLAST on NCBI

transcript from alignment at scaffold_299:23020..23299

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057839 ID=TCONS_00057839|Name=TCONS_00057839|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at scaffold_299:23020..23299 (Clytia hemisphaerica)
TACTGAACTACacaaaaaaatgataatagaaagaaaaaacaaacaaaaca
aataaaagatgCCAATTACTAACTCATTGATCAAGTTGATTATTATTAAA
TATAGACATGGATACACATGGGTATGGTTTTAAAGCACAAGACAAAGATA
TTGCTAGTGCTTATGAATGTGGTTTTTGTCACAATATTGTCAAAGAATTC
ACAGAACTACCATGCTGTCACGCATTTTGCAAAAATTGTCTTGAAGTATT
GGAAGAACAAACACTAGATGAAGATGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036459XLOC_036459Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057839-exon-scaffold_299-1491911889:23020..23299TCONS_00057839-exon-scaffold_299-1491911889:23020..23299Clytia hemisphaericaexon
TCONS_00057839-exon-scaffold_299-1510915933:23020..23299TCONS_00057839-exon-scaffold_299-1510915933:23020..23299Clytia hemisphaericaexon
TCONS_00057839-exon-scaffold_299-1575043694:23020..23299TCONS_00057839-exon-scaffold_299-1575043694:23020..23299Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_299supercontigscaffold_299:23020..23299 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.98874	2.41044	2.79875	3.28577	0.666685	0.526824	1.27118	1.7851	0.416596	2.06409	0	1.31699	1.31516	0	2.24576	1.50628	2.22673	1.90194	1.57658	2.1997	0.95597	0.699433	3.96784	0.515335	2.12313	1.42113	0.677879	1.4469	0.548712	0.559051
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057839 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top