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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057846 ID=TCONS_00057846|Name=TCONS_00057846|organism=Clytia hemisphaerica|type=transcript|length=248bp
CCAAAGGATCAAGATGAATTTATCCAACCTCAGTCCGAGCTCTGGGTCTG
AACCAGTAGTATataaacaatatttttaaacCTTTTGTCTGTTGCATCCT
TTTGTCTGTTGCATCCTTTCatcctgtttctttattttgctCTTCTTTTC
TTAATGAAACAGTAGATGTTGAAGATGGGAAAATCCAAACTTCACCTGAA
AAAGAAGATCCTTCCCCACCACTGTTCATATTGAAAACACCATTATCA Run BLAST on NCBI transcript from alignment at scaffold_3:73637..76096+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057846 ID=TCONS_00057846|Name=TCONS_00057846|organism=Clytia hemisphaerica|type=transcript|length=2460bp|location=Sequence derived from alignment at scaffold_3:73637..76096+ (Clytia hemisphaerica)
CCAAAGGATCAAGATGAATTTATCCAACCTCAGTCCGAGCTCTGGGTCTG
AACCAGTAGTATataaacaatatttttaaacCTTTTGTCTGTTGCATCCT
TTTGTCTGTTGCATCCTTTCatcctgtttctttattttgctCTTCTTTTC
TTAATGAAACAGTAGATGTTGAAGATGGGAAAATCCAAACTTCACCTGAA
AAAGAAGGTAAAGAAAattaatctttaaaattttgttgaaaatggtTTAC
CTACTAGTTTAGTTGAATTTGGATAATCAGACACAAATTACTCCACAATT
AGTCGAGTTCtagcaaataaaaattcatctttcacaaaacataatttttt
aaggATACTGTCACCAGACAGTAACCCAGGAAACAAGCAAAAATCAGTTC
TCTCAGGTTCTCTATCCTATAAAGTTGTCCATGattattgctccggccta
ggagccttaaattctctttCGTCCGACGACGAcgctcaagacattttttg
tTTGTTTATCTAATCCGataatctattccgatttaataaaaacggattac
cTGATTCaaataatactgtgatttgattggccgaaagtatttaagaaaaa
gatggctgccgaaagtcgACTAGTTGACTGTGTTgcaaatactggcaaat
ctcagtgataaattgatcattttcatcattattcatgatgttttggacat
gatttatgagaagtttgatgcatactggctctctaacaatgtggaaagac
tttggagaaattttggccatgaatcgtcagctgatcgagtgcttaaaaaa
tcttgcatatggctaacaaCAATAAAATTCTGTtggtaacttgacaatga
aactttcaaacacacatccattggaatttaaaagagaatactaaaattac
tacattacagtgaaaatttgaaaacgatctgagtagtttttgtggtgtta
tgtttatgactgaaaatgatcctgttttgtattcatcattattattatat
tgTTGACTGgcaaccgttccttttgatttttcaaacccgacatagatttt
ttacaaacatatcgctatgagaattcagtaaaggatacgaaaacacaatt
cctttttaaatttgaacaagattggagaaattgtcgcagtgttatggctg
aaatgattttttttggactttgtcgtaatttcatcgcggcttgcgaccgt
tccttttgatttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNaattttgaggaaaacgattttttgctaacaa
gcatatcgaggatttgacctttttcaagggttgcgtgccctcatgtagaa
aaaaaataaaaaacgataaaatagaaatttcgcggattgcaaaaaaaaat
tcaaatttttcgcggaaactaattttcgcggaatggcctttttcaaattt
ccaatgggacttattttcgcggatgacacccaaatccgcgaaatccgcga
aaatttatcccattaaagtagtagtttgtgggcaacattctaacacaact
aactcaacaagctcatctttcacatcttttaatctcttaagccggagctt
ccagcgcagctggtttatatTAAAAGGATATAAATGTACCAAAACAGATC
CTTGTAAAAAGCCATCATCTTAAGAAGAGTGAATAAATCCAAAATCACTC
TGTCTCTTCTAAATTTTAGATCCTTCCCCACCACTGTTCATATTGAAAAC
ACCATTATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057846-exon-scaffold_3-1491911889:73637..73843 | TCONS_00057846-exon-scaffold_3-1491911889:73637..73843 | Clytia hemisphaerica | exon |
| TCONS_00057846-exon-scaffold_3-1510915933:73637..73843 | TCONS_00057846-exon-scaffold_3-1510915933:73637..73843 | Clytia hemisphaerica | exon |
| TCONS_00057846-exon-scaffold_3-1575043694:73637..73843 | TCONS_00057846-exon-scaffold_3-1575043694:73637..73843 | Clytia hemisphaerica | exon |
| TCONS_00057846-exon-scaffold_3-1491911889:76056..76096 | TCONS_00057846-exon-scaffold_3-1491911889:76056..76096 | Clytia hemisphaerica | exon |
| TCONS_00057846-exon-scaffold_3-1510915933:76056..76096 | TCONS_00057846-exon-scaffold_3-1510915933:76056..76096 | Clytia hemisphaerica | exon |
| TCONS_00057846-exon-scaffold_3-1575043694:76056..76096 | TCONS_00057846-exon-scaffold_3-1575043694:76056..76096 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:73637..76096 + |
Blast
The following BLAST results are available for this feature:
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