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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057847 ID=TCONS_00057847|Name=TCONS_00057847|organism=Clytia hemisphaerica|type=transcript|length=718bp
GACGAAAGATGAGTTTAAAATAAGCTTTTCTGAGTGAGGGTTTCAAGAgg
catcaaactttttttcatcaGTAAAAACACTGGTGCTAATCAATGGCGTA
TAAACTGTGGGATAGCAGAAGAGAAAGTACTTTACAGCACTTCAAATGAA
AAATACCTTTATTTTTTGAGTGGTCTGCCAATTTTGATCTTTTCTCTATT
TGTTTATAATTTCAAACCAGGACTGCTATTCTCTCTGTATGGctcaattt
tctaaatttgtatttataaaatttttacagagCGTGAAGCGATAACACAC
ATGCTTCATCAAAAGATGGATAGAGTAATATACTTATTAGTGATTTCCTT
TGgatttctttctgtttataATTTTTGGCGAGATTTAGAAGTGAACTCAA
GAGTCATCCAACTGGAACAAAACCCTCAAGGTGGAGAAAGGCATCGTCGT
GCCGTAAATGACGAAGATGATGATAGTTGGGaacaaatccttaaaatcga
tCTTGATAAATTCAACCATTACATAAAAACAAAATCGAAGGAAACCTTTC
AAGAAGAAATCAACCGAGCTCTTTTGGGATTCCTTTCAAACCTCCCCTCT
CAACAATTGTGCAAACTCGTCAAAAACTGTGAAAAAAACTGCGAGGAAGA
GGAGAAGATagttttcggcgaagaaaaaatcgTGGAAAAGACACGAACCA
AGTGCGTCAGAGGACCGC Run BLAST on NCBI protein sequence of TCONS_00057847-protein >TCONS_00057847-protein ID=TCONS_00057847-protein|Name=TCONS_00057847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MLHQKMDRVIYLLVISFGFLSVYNFWRDLEVNSRVIQLEQNPQGGERHRR
AVNDEDDDSWEQILKIDLDKFNHYIKTKSKETFQEEINRALLGFLSNLPS
QQLCKLVKNCEKNCEEEEKIVFGEEKIVEKTRTKCVRGP Run BLAST on NCBI transcript from alignment at scaffold_3:93418..94701+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057847 ID=TCONS_00057847|Name=TCONS_00057847|organism=Clytia hemisphaerica|type=transcript|length=1284bp|location=Sequence derived from alignment at scaffold_3:93418..94701+ (Clytia hemisphaerica)
GACGAAAGATGAGTTTAAAATAAGCTTTTCTGAGTGAGGGTTTCAAGAgg
catcaaactttttttcatcaGTAAAAACACTGGTGCTAATCAATGGCGTA
TAAACTGTGGGATAGCAGAAGAGAAAGTACTTTACAGCACTTCAAATGAA
AAATACCTTTATTTTTTGAGTGGTCTGCCAATTTTGATCTTTTCTCTATT
TGTTTATAATTTCAAACCAGGACTGCTATTCTCTCTGTATGGctcaattt
tctaaatttgtatttataaaatttttacagagCGTGAAGCGATAACACAC
ATGCTTCATCAAAAGATGGATAGAGTAATATACTTATTAGTGATTTCCTT
TGgatttctttctgtttataATTTTTGGCGAGATTTAGAAGTGAACTCAA
GAGTCATCCAACTGGAACAAAACCCTCAAGGTATGTCAACTTTCGAAAGA
TTATTTGTCACTTTGATCgttcattttcttgaaattcagCTGTCATCCTG
TTTGTTTCACCATTTTTAATTGCTAACCGTCAAACTGCTCTTCttttttt
ggtgtgtttcgGCCTTAgagagtggtcagaaagtatctactagggggagG
GGAGTCTataaaaatttcatgtcattttAAGTGGCCTATATCAGGAGAGG
GGTGCCAAAAATATATTGACTGGTTAGGGAGGGGAGGGgcttgaagtttt
ttttgaggATATCATAAGGAGGGCTGCGTATATTTTtggcaatttaaaaa
aaaatcctcCACCTCACACTAGtggatactttctgaccactccctaatca
ttttttcatctatAAAACCTTTTTTAGGTGGAGAAAGGCATCGTCGTGCC
GTAAATGACGAAGATGATGATAGTTGGGaacaaatccttaaaatcgatCT
TGATAAATTCAACCATTACATAAAAACAAAATCGAAGGAAACCTTTCAAG
AAGAAATCAACCGAGCTCTTTTGGGATTCCTTTCAAACCTCCCCTCTCAA
CAATTGTGCAAACTCGTCAAAAACTGTGAAAAAAGTAAGCACCATGTACA
GTAGATATTTCTTtttagaatttcaattttttaccaTAAGAATTACTCAT
AAAAGTAAGCAGAAATAAGAATTCAGTTTTCACTTTTTCCGAACTAACTT
AATTAAAAAAGTAAGGTAATATCTAAAATGTTATGAACTCATTCTGTCAA
CAGACTGCGAGGAAGAGGAGAAGATagttttcggcgaagaaaaaatcgTG
GAAAAGACACGAACCAAGTGCGTCAGAGGACCGC Coding sequence (CDS) from alignment at scaffold_3:93418..94701+ >TCONS_00057847 ID=TCONS_00057847|Name=TCONS_00057847|organism=Clytia hemisphaerica|type=CDS|length=1251bp|location=Sequence derived from alignment at scaffold_3:93418..94701+ (Clytia hemisphaerica)
ATGCTTCATCAAAAGATGGATAGAGTAATATACTTATTAGTGATTTCCTT
TGgatttctttctgtttataATTTTTGGCGAGATTTAGAAGTGAACTCAA
GAGTCATCCAACTGGAACAAAACCCTCAAGGTGGAGAAAGGCATCGTCGT
GCCGTAAATGACGAAGATGATGATAGTTGGGaacaaatccttaaaatcga
tCTTGATAAATTCAACCATTACATAAAAACAAAATCGAAGGAAACCTTTC
AAGAAGAAATCAACCGAGCTCTTTTGGGATTCCTTTCAAACCTCCCCTCT
CAACAATTGTGCAAACTCGTCAAAAACTGTGAAAAAAACTGCGAGGAAGA
GGAGAAGATagttttcggcgaagaaaaaatcgTGGAAAAGACACGAACCA
AGTGCGTCAGAGGACCGATGCTTCATCAAAAGATGGATAGAGTAATATAC
TTATTAGTGATTTCCTTTGgatttctttctgtttataATTTTTGGCGAGA
TTTAGAAGTGAACTCAAGAGTCATCCAACTGGAACAAAACCCTCAAGGTG
GAGAAAGGCATCGTCGTGCCGTAAATGACGAAGATGATGATAGTTGGGaa
caaatccttaaaatcgatCTTGATAAATTCAACCATTACATAAAAACAAA
ATCGAAGGAAACCTTTCAAGAAGAAATCAACCGAGCTCTTTTGGGATTCC
TTTCAAACCTCCCCTCTCAACAATTGTGCAAACTCGTCAAAAACTGTGAA
AAAAACTGCGAGGAAGAGGAGAAGATagttttcggcgaagaaaaaatcgT
GGAAAAGACACGAACCAAGTGCGTCAGAGGACCGATGCTTCATCAAAAGA
TGGATAGAGTAATATACTTATTAGTGATTTCCTTTGgatttctttctgtt
tataATTTTTGGCGAGATTTAGAAGTGAACTCAAGAGTCATCCAACTGGA
ACAAAACCCTCAAGGTGGAGAAAGGCATCGTCGTGCCGTAAATGACGAAG
ATGATGATAGTTGGGaacaaatccttaaaatcgatCTTGATAAATTCAAC
CATTACATAAAAACAAAATCGAAGGAAACCTTTCAAGAAGAAATCAACCG
AGCTCTTTTGGGATTCCTTTCAAACCTCCCCTCTCAACAATTGTGCAAAC
TCGTCAAAAACTGTGAAAAAAACTGCGAGGAAGAGGAGAAGATagttttc
ggcgaagaaaaaatcgTGGAAAAGACACGAACCAAGTGCGTCAGAGGACC
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057847-exon-scaffold_3-1491911889:93418..93847 | TCONS_00057847-exon-scaffold_3-1491911889:93418..93847 | Clytia hemisphaerica | exon |
| TCONS_00057847-exon-scaffold_3-1510915933:93418..93847 | TCONS_00057847-exon-scaffold_3-1510915933:93418..93847 | Clytia hemisphaerica | exon |
| TCONS_00057847-exon-scaffold_3-1575043694:93418..93847 | TCONS_00057847-exon-scaffold_3-1575043694:93418..93847 | Clytia hemisphaerica | exon |
| TCONS_00057847-exon-scaffold_3-1491911889:94245..94451 | TCONS_00057847-exon-scaffold_3-1491911889:94245..94451 | Clytia hemisphaerica | exon |
| TCONS_00057847-exon-scaffold_3-1510915933:94245..94451 | TCONS_00057847-exon-scaffold_3-1510915933:94245..94451 | Clytia hemisphaerica | exon |
| TCONS_00057847-exon-scaffold_3-1575043694:94245..94451 | TCONS_00057847-exon-scaffold_3-1575043694:94245..94451 | Clytia hemisphaerica | exon |
| TCONS_00057847-exon-scaffold_3-1491911889:94621..94701 | TCONS_00057847-exon-scaffold_3-1491911889:94621..94701 | Clytia hemisphaerica | exon |
| TCONS_00057847-exon-scaffold_3-1510915933:94621..94701 | TCONS_00057847-exon-scaffold_3-1510915933:94621..94701 | Clytia hemisphaerica | exon |
| TCONS_00057847-exon-scaffold_3-1575043694:94621..94701 | TCONS_00057847-exon-scaffold_3-1575043694:94621..94701 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:93418..94701 + |
Blast
The following BLAST results are available for this feature:
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