TCONS_00057850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057850
Unique NameTCONS_00057850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057850 ID=TCONS_00057850|Name=TCONS_00057850|organism=Clytia hemisphaerica|type=transcript|length=269bp
GGAGTAATTTGTGTCTGATTATCCAAATTCAACTAAACTAGTAGGTAAac
cattttcaacaaaattttaaagattaatTTTCTTTACCTTCTTTTTCAGG
TGAAGTTTGGATTTTCCCATCTTCAACATCTACTGTTTCATTAAGAAAAG
AAGagcaaaataaagaaacaggatGAAAGGATGCAACAGACAAAAGGATG
CAACAGACAAAAGGTGATTTCAAAGTACGGTCATGGCTTTCTTCAACAAT
CATTCTGTCTTCAACTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_3:73467..73930-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057850 ID=TCONS_00057850|Name=TCONS_00057850|organism=Clytia hemisphaerica|type=transcript|length=464bp|location=Sequence derived from alignment at scaffold_3:73467..73930- (Clytia hemisphaerica)
GGAGTAATTTGTGTCTGATTATCCAAATTCAACTAAACTAGTAGGTAAAC
CATTTTCAACAAAATTTTAAAGATTAATTTTCTTTACCTTCTTTTTCAGG
TGAAGTTTGGATTTTCCCATCTTCAACATCTACTGTTTCATTAAGAAAAG
AAGAGCAAAATAAAGAAACAGGATGAAAGGATGCAACAGACAAAAGGATG
CAACAGACAAAAGGTTTAAAAATATTGTTTATATACTACTGGTTCAGACC
CAGAGCTCGGACTGAGGTTGGATAAATTCATCTTGATCCTTTGGGGAACC
TGAATATTTCGAATTACCAAATATATTAGACTCTTTTTACTAGCGTGAAC
GAGGACAGGCCACTACATTCTTTTTTGGAAATTGCTCATTACTTACCAAC
TTTATCAGGTGATTTCAAAGTACGGTCATGGCTTTCTTCAACAATCATTC
TGTCTTCAACTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036469XLOC_036469Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057850-exon-scaffold_3-1575043694:73718..73930TCONS_00057850-exon-scaffold_3-1575043694:73718..73930Clytia hemisphaericaexon
TCONS_00057850-exon-scaffold_3-1575043694:73467..73522TCONS_00057850-exon-scaffold_3-1575043694:73467..73522Clytia hemisphaericaexon
TCONS_00057850-exon-scaffold_3-1510915933:73718..73930TCONS_00057850-exon-scaffold_3-1510915933:73718..73930Clytia hemisphaericaexon
TCONS_00057850-exon-scaffold_3-1510915933:73467..73522TCONS_00057850-exon-scaffold_3-1510915933:73467..73522Clytia hemisphaericaexon
TCONS_00057850-exon-scaffold_3-1491911889:73718..73930TCONS_00057850-exon-scaffold_3-1491911889:73718..73930Clytia hemisphaericaexon
TCONS_00057850-exon-scaffold_3-1491911889:73467..73522TCONS_00057850-exon-scaffold_3-1491911889:73467..73522Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:73467..73930 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.52036	0	0	57.4467	43.4079	69.7972	66.6921	5.79874	8.61611	0	4.03055	6.79082	5.45507	5.12808	4.41528	6.23871	12.6266	4.42605	11.4449	10.1799	5.27354	0.29659	0	0.551905	0	1.21677	3.24899	5.34727	0.943091
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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