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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057863 ID=TCONS_00057863|Name=TCONS_00057863|organism=Clytia hemisphaerica|type=transcript|length=2414bp
GGGGATTCGAATCTTTGAATTAGCCAACAGAATTTAGAATACGGTGTAGG
ACAAAAGATTAAGAGATTTCGTTTCAATTTAAAGTTAACGGAAGCTTTAT
CTACAATTATTTGATTTACTGTCGATTTACtatgaaatatttacaaattt
aaaCGCATATAATGagatagcataaaattgttatcaCTTCTTCCAGGCAG
GAGTGAGTGTTTGTTGGTTCATCGTCATCTTATGAATGTTTATTCGCGAA
CCATTTTCATAATCATCTGCACTGTCCTCAAAACTATCGTAAGAATATTC
ATCCTCTGATCGACGTGTCTCATCAGCATCGCTGTCCCCTTCACCTGGGT
CGGTGTCATAAGGGTCGTACAAAATCGGGGTGCAATCGTATTTCCCGAAA
ACCGAATCTCGTGGTGACACTTCACCCGACAGCGGCTCGTATTCGTTTCG
TTTCGGTACTTTAGTTTGTTTTTCGTACTTGGGCCGGCGCTTTGGAATGG
TTGGTTTACGCTCCTTTGGATTTATTGAAGGCGATGCTTTTATTGGCTTT
GGGGGCTTTTCTGGTGGACTGTTGCTCGATTTCTCAGATCGCCTGCTCAA
TTCTGGCGTCAGTTGGGCGATTTTATCTTGAATTGGTTTTGTCGTCTTTG
GAGATCCTTCCGTCTTTTTGAGAGTTTTATTTGAACGCTTTCTTGGTTTG
GGAATAGGTCGATCGCTTTTTACATTTGTGTAGCTGGCGCCATCTGATGG
GATCTCGTAACCTGATCCAGTACTGGTTACTTTGTGTGGTGTGTCTGGAG
AAACTCCAGCGTCCATAGAGGAGGTTCTGGATGATGTGTACCCCTTGGTG
TCGTCTTGAATTAGATTTTCATCTTTCTGTGATGTAGGAGCTGTAGTTGA
CTGAATGGGAGAGACGGAGAGTGTATTAATGGGGCATGATGGGTAATCTG
GTGACGGGACTTCAGGAAGCACTCGGTTATGTAAACTTTGCGATTTCTTC
AAGCTTTCTTTTTTAGGTGGTCGGCTCAAAGAACCAATCTTTTCCTCGCT
GATTGAAACGCCCAACCGATTCCCTGGAATCGAAGGTAAACTGAATTGTG
GCTTGCGTAAAATACCAAAGGCCTTGAAAGACCCTTGATAATGGTCTTTG
TATTCATATTTTGTGTCCGCTTTGTTCATGATCACTTGAATTTCGTGTTG
TGAAAGACTATCGAATGGTTCTGAGTCGGGTAAGATCTCTCTCAGTAAAA
TACTGCGCTCAGGAAAGACGGCTATCTGACGATCTTCGGTACAGGATATA
ATTATCTTCTCCACTGCAATGTCTAATAAGCAATTGAAAGTCGCACTTCG
CTCGTTTTGTTGGATCAGAGTTGGAAATATTTGTCTTTGAGTAATACTTG
TCATATCATCACGCGGAGCTTGACTTGGTGGTTTTTCACATAAACGAAAC
TCGCCTTCTAAATCACCTGGAATCTGAAAGGTTTCTTTTGATCCGTAGAA
AGAAACTTTCGCTCTCTTCCGTGTTGTCTTTTTGCAGCAGCTCCCTCCCT
CTTTGTAAGAGATTAGCCTAAAGACTTGACCTCTACGAAGGAGAACACCA
AATGACGAGGACTCGACCCTCATGCAAACCACCCAGCGACAGTGATCTCG
CTTCTTCtttttcgcatctctcaaaaaGACATCGACTTCAGATAACGTTT
TGAATTTGTCTTCTTTAAGTGGAGTATAAAACGCCTTCAATATCGAATCA
CGGGGGATATTCTTTTGAACTCCATTTTCATCGATGATATTGTAAACCTG
CATGTCTTGAATGGATTGAATACAATGCATCTCATTCAAATGTGTCTCAT
TGTTTTGGTTGATATAGTCGTTATCATTTCGCATCTTTTTCTTGTAAAGC
AACACGTTTAATGGAAAACCATGTTTCCTTGTCGCCTCTTGTATATCAAC
GCAAATTGCGGATTTATCCATTTCTAATGTGACTTGTGACCTTCACTCCT
ATTTGTTTTCTGTGACTGATTTTCTCCTGTTGGAATCTCCTATCTCTCAT
CGTCGAAAATGATAGTACTTAATTGGTTCTTTAATCCCTTTTGTAATCAT
AATATTGTCATTAGAAAGTCGTTCAGTCTTGGAACCAATCTTGAACTTTT
TTGTGTCTGTATGTCTCTCTAAGTGTATTTAAGTGGTTTTAACGTCAATC
GACCAATTAGTACCCAGCTTACTCTTGAACGCATTTTGTTTACATTATGC
CAAGAGGTTTGAAAACGAGAGTGGTCAACAGCAAAAATGACCCGTCCGTG
CTTTTGTTTCGAGCCGGTAAAACGTCTCTTGGCACGTGCTCTTTCCAAAA
GGTCTTGACCTTGCGCTATGAACAAAGTCATTAAAAACCAGAGTTGCTGA
AACATTCATTAACT Run BLAST on NCBI protein sequence of TCONS_00057863-protein >TCONS_00057863-protein ID=TCONS_00057863-protein|Name=TCONS_00057863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=595bp
MDKSAICVDIQEATRKHGFPLNVLLYKKKMRNDNDYINQNNETHLNEMHC
IQSIQDMQVYNIIDENGVQKNIPRDSILKAFYTPLKEDKFKTLSEVDVFL
RDAKKKKRDHCRWVVCMRVESSSFGVLLRRGQVFRLISYKEGGSCCKKTT
RKRAKVSFYGSKETFQIPGDLEGEFRLCEKPPSQAPRDDMTSITQRQIFP
TLIQQNERSATFNCLLDIAVEKIIISCTEDRQIAVFPERSILLREILPDS
EPFDSLSQHEIQVIMNKADTKYEYKDHYQGSFKAFGILRKPQFSLPSIPG
NRLGVSISEEKIGSLSRPPKKESLKKSQSLHNRVLPEVPSPDYPSCPINT
LSVSPIQSTTAPTSQKDENLIQDDTKGYTSSRTSSMDAGVSPDTPHKVTS
TGSGYEIPSDGASYTNVKSDRPIPKPRKRSNKTLKKTEGSPKTTKPIQDK
IAQLTPELSRRSEKSSNSPPEKPPKPIKASPSINPKERKPTIPKRRPKYE
KQTKVPKRNEYEPLSGEVSPRDSVFGKYDCTPILYDPYDTDPGEGDSDAD
ETRRSEDEYSYDSFEDSADDYENGSRINIHKMTMNQQTLTPAWKK Run BLAST on NCBI transcript from alignment at scaffold_3:101369..103782 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057863 ID=TCONS_00057863|Name=TCONS_00057863|organism=Clytia hemisphaerica|type=transcript|length=2414bp|location=Sequence derived from alignment at scaffold_3:101369..103782 (Clytia hemisphaerica)
AGTTAATGAATGTTTCAGCAACTCTGGTTTTTAATGACTTTGTTCATAGC
GCAAGGTCAAGACCTTTTGGAAAGAGCACGTGCCAAGAGACGTTTTACCG
GCTCGAAACAAAAGCACGGACGGGTCATTTTTGCTGTTGACCACTCTCGT
TTTCAAACCTCTTGGCATAATGTAAACAAAATGCGTTCAAGAGTAAGCTG
GGTACTAATTGGTCGATTGACGTTAAAACCACTTAAATACACTTAGAGAG
ACATACAGACACAAAAAAGTTCAAGATTGGTTCCAAGACTGAACGACTTT
CTAATGACAATATTATGATTACAAAAGGGATTAAAGAACCAATTAAGTAC
TATCATTTTCGACGATGAGAGATAGGAGATTCCAACAGGAGAAAATCAGT
CACAGAAAACAAATAGGAGTGAAGGTCACAAGTCACATTAGAAATGGATA
AATCCGCAATTTGCGTTGATATACAAGAGGCGACAAGGAAACATGGTTTT
CCATTAAACGTGTTGCTTTACAAGAAAAAGATGCGAAATGATAACGACTA
TATCAACCAAAACAATGAGACACATTTGAATGAGATGCATTGTATTCAAT
CCATTCAAGACATGCAGGTTTACAATATCATCGATGAAAATGGAGTTCAA
AAGAATATCCCCCGTGATTCGATATTGAAGGCGTTTTATACTCCACTTAA
AGAAGACAAATTCAAAACGTTATCTGAAGTCGATGTCtttttgagagatg
cgaaaaaGAAGAAGCGAGATCACTGTCGCTGGGTGGTTTGCATGAGGGTC
GAGTCCTCGTCATTTGGTGTTCTCCTTCGTAGAGGTCAAGTCTTTAGGCT
AATCTCTTACAAAGAGGGAGGGAGCTGCTGCAAAAAGACAACACGGAAGA
GAGCGAAAGTTTCTTTCTACGGATCAAAAGAAACCTTTCAGATTCCAGGT
GATTTAGAAGGCGAGTTTCGTTTATGTGAAAAACCACCAAGTCAAGCTCC
GCGTGATGATATGACAAGTATTACTCAAAGACAAATATTTCCAACTCTGA
TCCAACAAAACGAGCGAAGTGCGACTTTCAATTGCTTATTAGACATTGCA
GTGGAGAAGATAATTATATCCTGTACCGAAGATCGTCAGATAGCCGTCTT
TCCTGAGCGCAGTATTTTACTGAGAGAGATCTTACCCGACTCAGAACCAT
TCGATAGTCTTTCACAACACGAAATTCAAGTGATCATGAACAAAGCGGAC
ACAAAATATGAATACAAAGACCATTATCAAGGGTCTTTCAAGGCCTTTGG
TATTTTACGCAAGCCACAATTCAGTTTACCTTCGATTCCAGGGAATCGGT
TGGGCGTTTCAATCAGCGAGGAAAAGATTGGTTCTTTGAGCCGACCACCT
AAAAAAGAAAGCTTGAAGAAATCGCAAAGTTTACATAACCGAGTGCTTCC
TGAAGTCCCGTCACCAGATTACCCATCATGCCCCATTAATACACTCTCCG
TCTCTCCCATTCAGTCAACTACAGCTCCTACATCACAGAAAGATGAAAAT
CTAATTCAAGACGACACCAAGGGGTACACATCATCCAGAACCTCCTCTAT
GGACGCTGGAGTTTCTCCAGACACACCACACAAAGTAACCAGTACTGGAT
CAGGTTACGAGATCCCATCAGATGGCGCCAGCTACACAAATGTAAAAAGC
GATCGACCTATTCCCAAACCAAGAAAGCGTTCAAATAAAACTCTCAAAAA
GACGGAAGGATCTCCAAAGACGACAAAACCAATTCAAGATAAAATCGCCC
AACTGACGCCAGAATTGAGCAGGCGATCTGAGAAATCGAGCAACAGTCCA
CCAGAAAAGCCCCCAAAGCCAATAAAAGCATCGCCTTCAATAAATCCAAA
GGAGCGTAAACCAACCATTCCAAAGCGCCGGCCCAAGTACGAAAAACAAA
CTAAAGTACCGAAACGAAACGAATACGAGCCGCTGTCGGGTGAAGTGTCA
CCACGAGATTCGGTTTTCGGGAAATACGATTGCACCCCGATTTTGTACGA
CCCTTATGACACCGACCCAGGTGAAGGGGACAGCGATGCTGATGAGACAC
GTCGATCAGAGGATGAATATTCTTACGATAGTTTTGAGGACAGTGCAGAT
GATTATGAAAATGGTTCGCGAATAAACATTCATAAGATGACGATGAACCA
ACAAACACTCACTCCTGCCTGGAAGAAGtgataacaattttatgctatct
CATTATATGCGtttaaatttgtaaatatttcataGTAAATCGACAGTAAA
TCAAATAATTGTAGATAAAGCTTCCGTTAACTTTAAATTGAAACGAAATC
TCTTAATCTTTTGTCCTACACCGTATTCTAAATTCTGTTGGCTAATTCAA
AGATTCGAATCCCC Coding sequence (CDS) from alignment at scaffold_3:101369..103782 >TCONS_00057863 ID=TCONS_00057863|Name=TCONS_00057863|organism=Clytia hemisphaerica|type=CDS|length=1788bp|location=Sequence derived from alignment at scaffold_3:101369..103782 (Clytia hemisphaerica)
ATGGATAAATCCGCAATTTGCGTTGATATACAAGAGGCGACAAGGAAACA
TGGTTTTCCATTAAACGTGTTGCTTTACAAGAAAAAGATGCGAAATGATA
ACGACTATATCAACCAAAACAATGAGACACATTTGAATGAGATGCATTGT
ATTCAATCCATTCAAGACATGCAGGTTTACAATATCATCGATGAAAATGG
AGTTCAAAAGAATATCCCCCGTGATTCGATATTGAAGGCGTTTTATACTC
CACTTAAAGAAGACAAATTCAAAACGTTATCTGAAGTCGATGTCtttttg
agagatgcgaaaaaGAAGAAGCGAGATCACTGTCGCTGGGTGGTTTGCAT
GAGGGTCGAGTCCTCGTCATTTGGTGTTCTCCTTCGTAGAGGTCAAGTCT
TTAGGCTAATCTCTTACAAAGAGGGAGGGAGCTGCTGCAAAAAGACAACA
CGGAAGAGAGCGAAAGTTTCTTTCTACGGATCAAAAGAAACCTTTCAGAT
TCCAGGTGATTTAGAAGGCGAGTTTCGTTTATGTGAAAAACCACCAAGTC
AAGCTCCGCGTGATGATATGACAAGTATTACTCAAAGACAAATATTTCCA
ACTCTGATCCAACAAAACGAGCGAAGTGCGACTTTCAATTGCTTATTAGA
CATTGCAGTGGAGAAGATAATTATATCCTGTACCGAAGATCGTCAGATAG
CCGTCTTTCCTGAGCGCAGTATTTTACTGAGAGAGATCTTACCCGACTCA
GAACCATTCGATAGTCTTTCACAACACGAAATTCAAGTGATCATGAACAA
AGCGGACACAAAATATGAATACAAAGACCATTATCAAGGGTCTTTCAAGG
CCTTTGGTATTTTACGCAAGCCACAATTCAGTTTACCTTCGATTCCAGGG
AATCGGTTGGGCGTTTCAATCAGCGAGGAAAAGATTGGTTCTTTGAGCCG
ACCACCTAAAAAAGAAAGCTTGAAGAAATCGCAAAGTTTACATAACCGAG
TGCTTCCTGAAGTCCCGTCACCAGATTACCCATCATGCCCCATTAATACA
CTCTCCGTCTCTCCCATTCAGTCAACTACAGCTCCTACATCACAGAAAGA
TGAAAATCTAATTCAAGACGACACCAAGGGGTACACATCATCCAGAACCT
CCTCTATGGACGCTGGAGTTTCTCCAGACACACCACACAAAGTAACCAGT
ACTGGATCAGGTTACGAGATCCCATCAGATGGCGCCAGCTACACAAATGT
AAAAAGCGATCGACCTATTCCCAAACCAAGAAAGCGTTCAAATAAAACTC
TCAAAAAGACGGAAGGATCTCCAAAGACGACAAAACCAATTCAAGATAAA
ATCGCCCAACTGACGCCAGAATTGAGCAGGCGATCTGAGAAATCGAGCAA
CAGTCCACCAGAAAAGCCCCCAAAGCCAATAAAAGCATCGCCTTCAATAA
ATCCAAAGGAGCGTAAACCAACCATTCCAAAGCGCCGGCCCAAGTACGAA
AAACAAACTAAAGTACCGAAACGAAACGAATACGAGCCGCTGTCGGGTGA
AGTGTCACCACGAGATTCGGTTTTCGGGAAATACGATTGCACCCCGATTT
TGTACGACCCTTATGACACCGACCCAGGTGAAGGGGACAGCGATGCTGAT
GAGACACGTCGATCAGAGGATGAATATTCTTACGATAGTTTTGAGGACAG
TGCAGATGATTATGAAAATGGTTCGCGAATAAACATTCATAAGATGACGA
TGAACCAACAAACACTCACTCCTGCCTGGAAGAAGtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057863-exon-scaffold_3-1491911889:101369..103782 | TCONS_00057863-exon-scaffold_3-1491911889:101369..103782 | Clytia hemisphaerica | exon |
| TCONS_00057863-exon-scaffold_3-1510915933:101369..103782 | TCONS_00057863-exon-scaffold_3-1510915933:101369..103782 | Clytia hemisphaerica | exon |
| TCONS_00057863-exon-scaffold_3-1575043694:101369..103782 | TCONS_00057863-exon-scaffold_3-1575043694:101369..103782 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:101369..103782 . |
Blast
The following BLAST results are available for this feature:
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