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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057866 ID=TCONS_00057866|Name=TCONS_00057866|organism=Clytia hemisphaerica|type=transcript|length=792bp
CGCATCctggttctttttttttttcatgaaggAAACTCAGAACTTTAAAG
ACTACCAGATCAGCACATTTAATTcagcattttcaaattcaacaaattat
tcaaaaagtaaaagattGCAACAAAAGTAAGATATTTTTCCCAATATCAG
CCATCAGCTTTGAATGTCAAATAACGTTTTCTGGTTTGACTGTGCTGCAA
ACGATGAGGAAAATgtgaacaaaacaaaaacatctaGACCAAAGTTATCC
TCTGATAGAAAGCCTAAAAAATGTAATTCAGTTGAAGAGATTCAGAAAAA
GATTGACGAAGCAAGTAAACGAAGAGAGGAGCAAAATAACAGAAGATCTC
AAAATGCTGCTCGATGTAGAGAAAGTATGCTTGCTCTTGCTCAAAAAATG
GACAAGTTAAATAAACATGAAACTGCCAAAAAAACTGGAAATATcaacaa
tgaaaatattttggctaAAAGAGAATATTGTAAAATTGCATCTGAAGTAT
CAATGCAATTCGAAACACTTTCCAGAAAGTACGAGAAGGATTTGTCAAGC
TCTTAAACTCCCTTAAACTCTTAAAATTaaagagattttttaaattataa
gATTGTATATAGGTAATGTTCTGCACAATATATGaattaatattttgatt
ttatgatGGGTGtatattgttttgatttatttttgtactGTATAGAAAAA
ACTTTGACTTAATAAATGCTTTATGAAGTGTGTATTTTACATCAAACTTa
agtttttcataaattttgtcCACTCTCTAAATTAAATCTTgc Run BLAST on NCBI protein sequence of TCONS_00057866-protein >TCONS_00057866-protein ID=TCONS_00057866-protein|Name=TCONS_00057866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MSNNVFWFDCAANDEENVNKTKTSRPKLSSDRKPKKCNSVEEIQKKIDEA
SKRREEQNNRRSQNAARCRESMLALAQKMDKLNKHETAKKTGNINNENIL
AKREYCKIASEVSMQFETLSRKYEKDLSSS Run BLAST on NCBI transcript from alignment at scaffold_30:7485..15864+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057866 ID=TCONS_00057866|Name=TCONS_00057866|organism=Clytia hemisphaerica|type=transcript|length=8380bp|location=Sequence derived from alignment at scaffold_30:7485..15864+ (Clytia hemisphaerica)
CGCATCctggttctttttttttttcatgaaggAAACTCAGAACTTTAAAG
ACTACCAGATCAGCACATTTAATTcagcattttcaaattcaacaaattat
tcaaaaagtaaaagattGCAACAAAAGTAAGATATTTTTCCCAATATCAG
CCATCAGCTTTGGTAAGTTTtctgtgttttcattttatttttagatgaaa
aataagcacgaccctgccgattccccggGGAATCACGGTAGAGCGCggtg
gtttgagttttctggaagccttatttattaagctgtgcatttttctgata
gtggattgTTAAATACAGCAGagttagggcaaaagagggtaTTTCTCAAA
CAAAAGCGGCATTCAatgatgcaagagttagattgaTGGTGTCTATTGAA
TAGCAAACTAATCTTACAATAATAACTGGTTTGgaggtcaatattttacg
tATTGACCAAGAAAACAGTTATATTATTGTGTTTATTAACTGGTGAACAT
TCTTTGTGCGTTTCTGGccaaaaaaatgcattttccaCTCATtttaggac
cctgccgacgcaccggacttaacgaacaccggacacgcgaaagtccggtg
taaaatgagaatttttttaccaccggacaatttctacaccggattTAAGG
AAGTCAGGTGTCCGGTGTcgaagaaggatattttttcccaacGGACAATC
Aatacaccggacatgaccagtccggtgcgtccggtgtttcttaatttttt
gtttcataaatgtccggcgtccaaaattccctgtatgcaacaccggactg
acaccgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAccccgg
actgacaccggacttattgcgtccggtgtagcgaaaggatactttttgcc
accggacaaatacaccggacagtccggtgcgtcggcagggtcctctcatt
ttccatgattttttcgtttcttttttacccaatattttctttgatttatt
cTGACGTCACTTTGTTATGAGAAGTCATTGCAACGTCAGCTTTTACTTCA
ACCAGTTAATAATATCCAGTACAAACTGAATAAATTATCATGTACCTAGG
TGCTGTGTTGTAAATGACAAATCTtaagttttcattaaaaaaatttctac
tgGGTTTATTAGTTATTCATAAGACGAAgttctcccaaacaactattttt
tgattggaaaaaataaaacatcGATCAATACGGTGATTATTTGGCAGATT
CATAAGTGTCTGtgattaaacaaaataaaataataattctaTTTCCTTGT
TCTTCATGCTCGCAAATTCAAGAGtttttctctttgatcttttattgGTC
TCTTTTGTTGATTGCTTGTGTGTCATCAATGACTCCCGAGTCATTTCTTG
AAATGGAAACACACAAATTTTACCAAGCTGAATATCTGTATATaatatag
accttttgctaatcaggatgTCATGTTAGGATAGTTAAAGACTCAAGCAT
CAAAATAGCGGTGAGAAAAAATTAGTGTACACTTGTTATAGTTATGCCTT
GAAATGTGTTTTTGTATTATTGCtgaagtttttaattattttaaacaTTA
CATCTTTATAAGCAAAAGGGTCTATAAccaatatatataaaaaagaaagc
caATTATTGGTATACAAATTATAGAATGTCAAATAACGTTTTCTGGTTTG
ACTGTGCTGCAAACGATGAGGAAAATgtgaacaaaacaaaaacatctaGA
CCAAAGTTATCCTCTGATAGAAAGCCTAAAAAATGTAATTCAGTTGAAGA
GATTCAGAAAAAGATTGACGAAGCAAGTAAACGAAGAGAGgtaattaaaa
atgtttaaaatgttGTATCATTCCATTTTACTATAAAATAATAAGCAGAC
AGGCCATTTCTCATGTCCTTTTAGTGTCCGGTTATCGGACACTGCCCTTC
CCGAATTTGCAaagattttggtaaaaacagcctttttggTGAAAAACAGC
CTTATAATACCATACTTTTTCTAACTTCTAtttatcataaaaaaattcac
tccattaagaattagtgaataaggctgAACCTGTGTGGAAACACGTGGGA
GAGGCCAGTATTTTTCNATTTTACCAAGCTGAATATCTGTATATaatata
gaccttttgctaatcaggatgTCATGTTAGGATAGTTAAAGACTCAAGCA
TCAAAATAGTGATGAGAAAAAATTAGTATACACTTGTTATAGTTATGCCT
TGAAATGTGTTTTTGTATTATTGCtgaagtttttaattattttaaacaTT
ACATCTTTATAAGCAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTCTGATATCAATAAAGATAGTTGACATGCTA
CCGATATTTTGATTGTTCCAAACCATTCCCCGCTCGTGTGCAGTCTGACA
CGGCACAAACACTCCCAGTTATTCAAAGCGATTTCTATTCCCCTTGGGGA
ATTAAAGTTCAATTGAAAATCTGgtggaaaaacaatttttcaattcgaaC
TCCTGGCTATTTGAagtaaattcttaaaaattatcCCCCTTGGAGCTTTG
AATAACTGGAGGTCTACtgtatctttttcaaaaagactcccaataaaaat
aattgaatgCCTCTGTAACTATAATAGAAGCATGTGCTTAATCCCAATTT
CTACCAAGCCTTAAAAATATGAGATTTCTGCATGCTGcattatttattat
ttcaattattctgCACtacagtaaaatcaaaaaaaattcaacacaATAGC
AAAGAATATTTTCATACCTTTTTGACGAGATATGCTTTGCTTGTTGCATC
AGATAAGCAATAGAATGAAGCTACAGCATAACTTAAACCGACAACTCTTT
TTGATACAAATTGTCTAAAAGCTTCTCCAACCTCGTTGGCATAACCTGTT
TGGAAagtaaaataaaacatttttgtgTTATTTCAGTTAATTTGCACTGG
TCTTTAGGGGGAGTTAATACTGAAACNCTTGTgttatttcagttaatttt
cactGGTCTTTAGGGGGAGTTAATACTGAAACATCCTGTTGGAAGTAAAT
ATCTCAAATAAATTATGAATATAATTTCAGGTGCTAGCAAAATTTCAGAT
TCCAggcaatttaatttaatttaatttaaactTCTAAGAAATTTATACGC
TTTTACAACATAGCTGTTACCAAGGTACCTACAAAATAGTTTATCCCGTT
TGTACTGGCTGGAGTATTTTGTTATTGAATAGACCGGTTGACAGGTTGAC
CGCCACGTTCTCCCAAAAACTATTTTGCAGGGTTTGAGGATTTAGCAAGG
ATGAAAAAAACCATCCCAGTAGAAATACGCAGAACTACGCAGAACACTTG
CAAACTCCCTAATgggggaaaaaaatttcaacctgtcaatcattttgatt
ttctcaatatccttttattttcatttctggaacTTTTGTCTTTTATTGCA
TTtgcaaaaacaggaaaaatacaaaagttgtTACTGCTGATTTTTCTCCT
GCTTTTCCGGGACTTTAGCTAAAGTGCTTGTGTGCAGCATtaggtacaaa
gtccaaattaaaaaatttggtttgacCAAGGGCTGTTATACCACCAACAA
CTAACTGCACTGCacacacaaaaaaacaaaaattaaaaaagatacCATCA
GATCATTATTGGAAAAACAGTATACCTAAGTATCTTATTGGAGTATCTCT
GAAATAATCTATCTCATCATCTTTCTGCTTTGCTCTGGTCTGATCACTCA
TTTCCCTCGAACAGCTGCTAGTCTTGGTCTGATGATGACCTGGTCAAAGA
CAGACAGAAAAAAAGGACCAAAGTCAAGTTAGCGACACATTCAGCGACAC
ATTCAGCGACACATTCAGCGACACTTTCGCTTTCAGCGACACTTTCAGCg
acacattcgaattcttttgtatttttcatgctGAAGGAGAGAATTCCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcatttgagggctat
gcatgttagccttcactgatgcaagttaccctttttcacggtagtGGATT
GTTAAATACAGCAGAGTTAGGCCCTGACATTTAagttagggcaaaagagg
gtaTTTCTCAAACAAAAGCGGCATTCaatgcaagagttagattgaTGGTG
TCTATTGAATAGCAAACTAATCTAACATCTAATACAATAATAACTGGTTT
GGAGGTCAATACGGCAAAATATTGACCGCAGCCGAAGTacagaccgagct
tgcgaggtctgTGTGCAGGAtaaggtcaatattttacgtATTGACCAAGA
AAACAGTTATATTATTGTGTTTATTAACTGGTGAACATTCTTTGTGCGTT
TCTGGGcaaaaaatgcattttccactcattttccatgattttttcgtttc
ttttttacCCAATATTTTCTTAGATTTATTCTGACGTCACTGCAACGTCA
GCTTTTACTTCAACCAGTTAATAATATCCAGTACAAACTGAATAAATTAT
CTTGTACCTAGGTGCTGTGTTGTAAATGACAAATCTtaagttttcattaa
aaaaatttctactgGGTTTATTAGTTATTCATAAGACAAAgttctcccaa
acaactattttttgattggaaaaaataaaacatcGATCAATACGGTGATC
ACAAAATATTTGGCAGATTCATAAGTGTCTGtgattaaacaaaataaaat
aataattctaTTTCCTTGTTCTTCATGCTCGCCAATTCGAGAGtttttct
ctttgatcttttattgGTCTCTTTTGTTGATTGCTTGTGTGTCATCAATG
ACTCCCGAGTCATTTCTTGAAATGGAAACACACAAATTTTACCAAGCTGA
ATATCTGTATATaatatagaccttttgctaatcaggatgTCATGTTAGGA
TAGTTAAAGACTCAAGCATCAAAATAGTGATGAGAAAAAATTAGTGTACA
CTTGTTATAGTTATGCCTTGAAATGTGTTTTTGTATTATTGCtgaagttt
ttaattattttaaacaTTACATCTTTATAAGCAAAAGGGTCTATAAccaa
tatatataaaaaagaaagccaATTATTGGTATACAAATTATAGAATGTCA
AATAACGTTTTCTGGTTTGACTGTGCTGCAAACGATGAGGAAAATgtgaa
caaaacaaaaacatctaGACCAAAGTTATCCTCTGATAGAAAGCCTAAAA
AATGTAATTCAGTTGAAGAGATTCAGAAAAAGATTGACGAAGCAAGTAAA
CGAAGAGAGgtaattaaaaatgtttaaaatgttGTATCATTCCATTTTAC
TATAAAATAATAAGCAGACAGGCCATTTCTCATGTCCTTTTAGTGTCCGG
TTATCGGACACTGCACTTCCCGAATTTGCAaagattttggtaaaaacagc
cccCAGCccactagggcaagatgggttacggggatgctccgctggtcagg
gtaccttttttaacctccacgagtcacaggtagggttgcaaaaacaccaa
aatagaaaaatcagtccctcgtagggtgcctttttttggaaaatttgggg
gaaaagtagaaaatttgagaaaattttgNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGGAAACAGCCTTTTTGGTGAAAAACACAAGAAAGGTGCCCTTTTTGACT
ACCACCAGGAGAcactgccctgcctttctaaaatattgcCTGGCAGATAT
TCATTCAGTGTATTTTCATAAtatcaacaaaacaaagaagaagTGTAGGT
ACCTGAAAAATATTTCTGTTTCTGGTCAGTTGGCACAtcaatatttcttt
gttttttttaaagtttgatttGCAAGGACGTTATTgtgttatatttttta
aaatataatgCAATGCAATTTTATAAATGATGCAAAAAATAATACCATAC
TTTTTTTAACTTCTATTTATCATAATAGAAGACTGAGTGTTTAGAAAATG
GATTTAGGGATAGAAATCTCAATACCATACCATTGCAACCAACGCGAGTT
CCAGTggacttgaaataaaaatattttttggtttaCAACTGTTGGGTGGT
TGAAATTGGCAATAAGATGACATAATCTAATAGGTGCCTGTCAAACTATC
ATTTaccatttttattccaaatatACATCCTTTTTGGATTTTCtatctga
aaattattttcatgtcCCCTCAGCTACTCTTTAGGCTATCAAACTTTATT
CAGCTTTTACTAGACGCCTGGTAAATTATTAAAAGAGATTATCTACAAGT
ACAACAAAACAGTGTGCTTCCCGCAACGTAAACAGTGAACAGTGCCAAAA
GTGTccatatcatttgaaaatcattcAGCTGAATTTTTTCTTAGACAAGG
CTCTTTACTTTTTCAGGAGCAAAATAACAGAAGATCTCAAAATGCTGCTC
GATGTAGAGAAAGTATGCTTGCTCTTGCTCAAAAAATGGACAAGTTAAAT
AAACATGAAACTGCCAAAAAAACTGGAAATATcaacaatgaaaatatttt
ggctaAAAGAGAATATTGTAAAATTGCATCTGAAGTATCAATGCAATTCG
AAACACTTTCCAGAAAGTACGAGAAGGATTTGTCAAGCTCTTAAACTCCC
TTAAACTCTTAAAATTaaagagattttttaaattataagATTGTATATAG
GTAATGTTCTGCACAATATATGaattaatattttgattttatgatGGGTG
tatattgttttgatttatttttgtactGTATAGAAAAAACTTTGACTTAA
TAAATGCTTTATGAAGTGTGTATTTTACATCAAACTTaagtttttcataa
attttgtcCACTCTCTAAATTAAATCTTgc Coding sequence (CDS) from alignment at scaffold_30:7485..15864+ >TCONS_00057866 ID=TCONS_00057866|Name=TCONS_00057866|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_30:7485..15864+ (Clytia hemisphaerica)
ATGTCAAATAACGTTTTCTGGTTTGACTGTGCTGCAAACGATGAGGAAAA
TgtgaacaaaacaaaaacatctaGACCAAAGTTATCCTCTGATAGAAAGC
CTAAAAAATGTAATTCAGTTGAAGAGATTCAGAAAAAGATTGACGAAGCA
AGTAAACGAAGAGAGGAGCAAAATAACAGAAGATCTCAAAATGCTGCTCG
ATGTAGAGAAAGTATGCTTGCTCTTGCTCAAAAAATGGACAAGTTAAATA
AACATGAAACTGCCAAAAAAACTGGAAATATcaacaatgaaaatattttg
gctaAAAGAGAATATTGTAAAATTGCATCTGAAGTATCAATGCAATTCGA
AACACTTTCCAGAAAGTACGAGAAGGATTTGTCAAGCTCTTAAATGTCAA
ATAACGTTTTCTGGTTTGACTGTGCTGCAAACGATGAGGAAAATgtgaac
aaaacaaaaacatctaGACCAAAGTTATCCTCTGATAGAAAGCCTAAAAA
ATGTAATTCAGTTGAAGAGATTCAGAAAAAGATTGACGAAGCAAGTAAAC
GAAGAGAGGAGCAAAATAACAGAAGATCTCAAAATGCTGCTCGATGTAGA
GAAAGTATGCTTGCTCTTGCTCAAAAAATGGACAAGTTAAATAAACATGA
AACTGCCAAAAAAACTGGAAATATcaacaatgaaaatattttggctaAAA
GAGAATATTGTAAAATTGCATCTGAAGTATCAATGCAATTCGAAACACTT
TCCAGAAAGTACGAGAAGGATTTGTCAAGCTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057866-exon-scaffold_30-1491911889:7485..7646 | TCONS_00057866-exon-scaffold_30-1491911889:7485..7646 | Clytia hemisphaerica | exon |
| TCONS_00057866-exon-scaffold_30-1510915933:7485..7646 | TCONS_00057866-exon-scaffold_30-1510915933:7485..7646 | Clytia hemisphaerica | exon |
| TCONS_00057866-exon-scaffold_30-1575043694:7485..7646 | TCONS_00057866-exon-scaffold_30-1575043694:7485..7646 | Clytia hemisphaerica | exon |
| TCONS_00057866-exon-scaffold_30-1491911889:9209..9374 | TCONS_00057866-exon-scaffold_30-1491911889:9209..9374 | Clytia hemisphaerica | exon |
| TCONS_00057866-exon-scaffold_30-1510915933:9209..9374 | TCONS_00057866-exon-scaffold_30-1510915933:9209..9374 | Clytia hemisphaerica | exon |
| TCONS_00057866-exon-scaffold_30-1575043694:9209..9374 | TCONS_00057866-exon-scaffold_30-1575043694:9209..9374 | Clytia hemisphaerica | exon |
| TCONS_00057866-exon-scaffold_30-1491911889:15401..15864 | TCONS_00057866-exon-scaffold_30-1491911889:15401..15864 | Clytia hemisphaerica | exon |
| TCONS_00057866-exon-scaffold_30-1510915933:15401..15864 | TCONS_00057866-exon-scaffold_30-1510915933:15401..15864 | Clytia hemisphaerica | exon |
| TCONS_00057866-exon-scaffold_30-1575043694:15401..15864 | TCONS_00057866-exon-scaffold_30-1575043694:15401..15864 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_30 | supercontig | scaffold_30:7485..15864 + |
Blast
The following BLAST results are available for this feature:
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