TCONS_00057878 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057878
Unique NameTCONS_00057878
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057878 ID=TCONS_00057878|Name=TCONS_00057878|organism=Clytia hemisphaerica|type=transcript|length=233bp
NGCCCCCCGCCCCACTAGAAAACTTAGCCAAAAATCGTCTGGACACTACG
attagatagaaattttcatccacactgaaggaaaaagctccaccggggcg
gcACAAAGACAGTGGTGTATGTGCGTGAGAGAATGAAAACAATGcccata
aagaaaagaaagaccaaCGAAGTTACAGTCTATATTCTATTAATTTGATT
GTAATGATCAATggcctcatttttatttttggc
Run BLAST on NCBI

transcript from alignment at scaffold_30:55465..55697

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057878 ID=TCONS_00057878|Name=TCONS_00057878|organism=Clytia hemisphaerica|type=transcript|length=233bp|location=Sequence derived from alignment at scaffold_30:55465..55697 (Clytia hemisphaerica)
gccaaaaataaaaatgaggccATTGATCATTACAATCAAATTAATAGAAT
ATAGACTGTAACTTCGttggtctttcttttctttatgggCATTGTTTTCA
TTCTCTCACGCACATACACCACTGTCTTTGTgccgccccggtggagcttt
ttccttcagtgtggatgaaaatttctatctaatCGTAGTGTCCAGACGAT
TTTTGGCTAAGTTTTCTAGTGGGGCGGGGGGCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036489XLOC_036489Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057878-exon-scaffold_30-1491911889:55465..55697TCONS_00057878-exon-scaffold_30-1491911889:55465..55697Clytia hemisphaericaexon
TCONS_00057878-exon-scaffold_30-1510915933:55465..55697TCONS_00057878-exon-scaffold_30-1510915933:55465..55697Clytia hemisphaericaexon
TCONS_00057878-exon-scaffold_30-1575043694:55465..55697TCONS_00057878-exon-scaffold_30-1575043694:55465..55697Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:55465..55697 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	2.00255	0	0	4.6573	1.0891	3.33882	5.11972	8.53246	3.74791	7.66579	5.81426	3.67375	7.46003	3.2447	4.29405	8.6121	5.16056	7.49079	3.35939	11.578	10.2194	11.9439	6.0397	3.24245	2.75399	0	0	8.76514	2.44556
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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