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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057881 ID=TCONS_00057881|Name=TCONS_00057881|organism=Clytia hemisphaerica|type=transcript|length=1054bp
ACTAATTGCGTGATCTAAATTGTTGGTAAGAAAAGTTGATAACGATTTTC
GAAATAGATTTGAGTGGAATTGTTCACTTTTTAGAAATTACTTCTATGAA
GTTTGTTAGAATAGGAGAAAGTGAAACTGTCAACTTTTTAAAGAgagtga
aattcaaaaattttgcgaatcATTGTACAGGATGACGACATGTCTTTTGG
AAGAAGGAGATATTTCATATCACATTCTCACAACTGAACACAGAAATGAA
GCTCTGATGGTTCTTGCACATGCTTTTTGTGATGACCCCGCCTGTCACGC
CCTAAATGAACGCCCCTCAACCACCATAAAGATTGAATTGGATGATTGGG
TGGAATATTTGGATTACTGGATGGATAGTTGCGTGGAGAATGGAATCAGT
GTGGTAGCTATCAATGTTGTGAAGTATTCAGTGGTAGGAGTTATGGCAAA
CCGTCATCTGTTGGACAACCCTGAGAAGTTCTTAAAAGAATATTGCTCAA
TGCAGCATACCAAAGCACTCACACATTGGAACGAACTGGCGTATTTTTTC
GAAGAAGAATCAGCCAAACAATTGCCAGAGCTTCGTGAACCTTGGAAAAC
AGCAGATCTCATCTATCTCGGTGTTCATGAAAACTACCGGCGAAAAAACA
TCGCAAATAATTTGGTGCGTGTATCTCTGCCCTTATTCAAGAAAGCTGGC
TACAAATTTGCTACTCTAGAAGCAACGAACTTTTACACTTCACAAATCGC
TCAGAGAAATGATTTCGAACGAATTCATTATTATGATATCAAAACATGGG
TCAAGGGAGGAgaaactatttttgataatgtgaAAGAACCGCATGGAATG
TTCGAATATTGGGTCAAACGTTTGTGAAGGGATTTGTCGATTGATCATAT
CGTAATTTGAACTGATTGTGACGAACTTTTCCCGGCGAAAATCTTACCGG
GCGAAGTTTATTTTTAAGTTGTTTAAGGTACGAAAAATACGAAcacagat
ttgaaatcagcaaggtttaaattttctaaatagcTTGATGTCATGATTTT
TAAT Run BLAST on NCBI protein sequence of TCONS_00057881-protein >TCONS_00057881-protein ID=TCONS_00057881-protein|Name=TCONS_00057881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MTTCLLEEGDISYHILTTEHRNEALMVLAHAFCDDPACHALNERPSTTIK
IELDDWVEYLDYWMDSCVENGISVVAINVVKYSVVGVMANRHLLDNPEKF
LKEYCSMQHTKALTHWNELAYFFEEESAKQLPELREPWKTADLIYLGVHE
NYRRKNIANNLVRVSLPLFKKAGYKFATLEATNFYTSQIAQRNDFERIHY
YDIKTWVKGGETIFDNVKEPHGMFEYWVKRL Run BLAST on NCBI transcript from alignment at scaffold_300:50448..52181+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057881 ID=TCONS_00057881|Name=TCONS_00057881|organism=Clytia hemisphaerica|type=transcript|length=1734bp|location=Sequence derived from alignment at scaffold_300:50448..52181+ (Clytia hemisphaerica)
ACTAATTGCGTGATCTAAATTGTTGGTAAGAAAAGTTGATAACGATTTTC
GAAATAGATTTGAGTGGAATTGTTCACTTTTTAGAAATTACTTCTATGAA
GTTTGTTAGAATAGGAGAAAGTGAAACTGTCAACTTTTTAAAGAgagtga
aattcaaaaattttgcgaatcATTGTACAGGATGACGACATGTCTTTTGG
AAGAAGGAGATATTTCATATCACATTCTCACAACTGAACACAGAAATGAA
GCTCTGATGGTTCTTGCACATGCTTTTTGTGATGACCCCGCCTGTCACGC
CCTAAATGAACGCCCCTCAACCACCATAAAGATTGAATTGGATGATTGGG
TGGAATATTTGGATTACTGGATGGATAGTTGCGTGGAGAATGGAATCAGT
GTGGTAGCTATCAGTGAGTTCGATCTTGATTTCCAAAATAAATCCTTTGA
TCTAgtcatacactttttttatataagaacgaGTAAATTCGTGATGAGGC
TCGActgttctgttttttttctttttttcttttgcactttgagcctcaaa
ctATTCTCGTCATATTCTTATTTACATGATGAAATTCAGTTATTTAGgct
ttttacccattttttactactttgccccctaaattgcttgaaattttagt
aattccaggctcagcattgttcttaaattgttcttaattttataaaaaaa
agtgtatttattATTCGTCAATTGCATCCACGCGGTAAACAACATGActc
ttcttttgaaaaagtcgGTTGTAGTATAGAGTACTCTCTTTAGTCAGTGT
TATTGCTTTGCTCTCTTAGAACGACCAACTGAAGCTTATGTTGATTTCGT
TTCAGATGTTGTGAAGTATTCAGTGGTAGGAGTTATGGCAAACCGTCATC
TGTTGGACAACCCTGAGAAGTTCTTAAAAGAATATTGCTCAATGCAGCAT
ACCAAAGCACTCACACATTGGAACGAACTGGCGTATTTTTTCGAAGAAGA
ATCAGCCAAACAATTGCCAGAGCTTCGTGAACCTTGGAAAACAGCAGATC
TCATCTATCTCGGTGTTCATGAAAACTACCGGCGAAAAAACATCGCAAAT
AATTTGGTGCGTGTATCTCTGCCCTTATTCAAGAAAGCTGGCTACAAATT
TGCTACTCTAGAAGCAACGAACTTTTACACTTCACAAATCGCTCAGAGAA
ATGATTTCGAACGAATTCATTATTATGATATCAAAACATGGGTCAAGGGA
GGAgaaactatttttgataatgtgaAAGAACCGCATGGAATGTTCGAATA
TTGGGTCAAACGTTTGTGAAGGGATTTGTCGATTGATCATATCGTAATTT
GAACTGATTGTGACGAACTTTTCCCGGCGAAAATCTTACCGGGCGAAGTT
TATTTTTAAGTTGTTTAAGGTACGAAAAATACGAACACAGATTTTAAATC
AACAaggtttaaattttctaaatagcTTGATgtcatgatttttttaatac
aGTAGAACAAATCTTCGATACTTTTTTTTCTGGACACCcctgtataagaa
attgaatattgacaccggNTCACATCGTAATTTGATCACATCGTAATTTG
AACTTTTCTCGGCGAAAATCTTACCGGGCGGGCGAAGTTTATTTTAAGTT
GTTTAAGGTACGAAAAATACGAAcacagatttgaaatcagcaaggtttaa
attttctaaatagcTTGATGTCATGATTTTTAAT Coding sequence (CDS) from alignment at scaffold_300:50448..52181+ >TCONS_00057881 ID=TCONS_00057881|Name=TCONS_00057881|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at scaffold_300:50448..52181+ (Clytia hemisphaerica)
ATGACGACATGTCTTTTGGAAGAAGGAGATATTTCATATCACATTCTCAC
AACTGAACACAGAAATGAAGCTCTGATGGTTCTTGCACATGCTTTTTGTG
ATGACCCCGCCTGTCACGCCCTAAATGAACGCCCCTCAACCACCATAAAG
ATTGAATTGGATGATTGGGTGGAATATTTGGATTACTGGATGGATAGTTG
CGTGGAGAATGGAATCAGTGTGGTAGCTATCAATGTTGTGAAGTATTCAG
TGGTAGGAGTTATGGCAAACCGTCATCTGTTGGACAACCCTGAGAAGTTC
TTAAAAGAATATTGCTCAATGCAGCATACCAAAGCACTCACACATTGGAA
CGAACTGGCGTATTTTTTCGAAGAAGAATCAGCCAAACAATTGCCAGAGC
TTCGTGAACCTTGGAAAACAGCAGATCTCATCTATCTCGGTGTTCATGAA
AACTACCGGCGAAAAAACATCGCAAATAATTTGGTGCGTGTATCTCTGCC
CTTATTCAAGAAAGCTGGCTACAAATTTGCTACTCTAGAAGCAACGAACT
TTTACACTTCACAAATCGCTCAGAGAAATGATTTCGAACGAATTCATTAT
TATGATATCAAAACATGGGTCAAGGGAGGAgaaactatttttgataatgt
gaAAGAACCGCATGGAATGTTCGAATATTGGGTCAAACGTTTGTGAATGA
CGACATGTCTTTTGGAAGAAGGAGATATTTCATATCACATTCTCACAACT
GAACACAGAAATGAAGCTCTGATGGTTCTTGCACATGCTTTTTGTGATGA
CCCCGCCTGTCACGCCCTAAATGAACGCCCCTCAACCACCATAAAGATTG
AATTGGATGATTGGGTGGAATATTTGGATTACTGGATGGATAGTTGCGTG
GAGAATGGAATCAGTGTGGTAGCTATCAATGTTGTGAAGTATTCAGTGGT
AGGAGTTATGGCAAACCGTCATCTGTTGGACAACCCTGAGAAGTTCTTAA
AAGAATATTGCTCAATGCAGCATACCAAAGCACTCACACATTGGAACGAA
CTGGCGTATTTTTTCGAAGAAGAATCAGCCAAACAATTGCCAGAGCTTCG
TGAACCTTGGAAAACAGCAGATCTCATCTATCTCGGTGTTCATGAAAACT
ACCGGCGAAAAAACATCGCAAATAATTTGGTGCGTGTATCTCTGCCCTTA
TTCAAGAAAGCTGGCTACAAATTTGCTACTCTAGAAGCAACGAACTTTTA
CACTTCACAAATCGCTCAGAGAAATGATTTCGAACGAATTCATTATTATG
ATATCAAAACATGGGTCAAGGGAGGAgaaactatttttgataatgtgaAA
GAACCGCATGGAATGTTCGAATATTGGGTCAAACGTTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057881-exon-scaffold_300-1491911889:50448..50860 | TCONS_00057881-exon-scaffold_300-1491911889:50448..50860 | Clytia hemisphaerica | exon |
| TCONS_00057881-exon-scaffold_300-1510915933:50448..50860 | TCONS_00057881-exon-scaffold_300-1510915933:50448..50860 | Clytia hemisphaerica | exon |
| TCONS_00057881-exon-scaffold_300-1575043694:50448..50860 | TCONS_00057881-exon-scaffold_300-1575043694:50448..50860 | Clytia hemisphaerica | exon |
| TCONS_00057881-exon-scaffold_300-1491911889:51303..51866 | TCONS_00057881-exon-scaffold_300-1491911889:51303..51866 | Clytia hemisphaerica | exon |
| TCONS_00057881-exon-scaffold_300-1510915933:51303..51866 | TCONS_00057881-exon-scaffold_300-1510915933:51303..51866 | Clytia hemisphaerica | exon |
| TCONS_00057881-exon-scaffold_300-1575043694:51303..51866 | TCONS_00057881-exon-scaffold_300-1575043694:51303..51866 | Clytia hemisphaerica | exon |
| TCONS_00057881-exon-scaffold_300-1491911889:52105..52181 | TCONS_00057881-exon-scaffold_300-1491911889:52105..52181 | Clytia hemisphaerica | exon |
| TCONS_00057881-exon-scaffold_300-1510915933:52105..52181 | TCONS_00057881-exon-scaffold_300-1510915933:52105..52181 | Clytia hemisphaerica | exon |
| TCONS_00057881-exon-scaffold_300-1575043694:52105..52181 | TCONS_00057881-exon-scaffold_300-1575043694:52105..52181 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_300 | supercontig | scaffold_300:50448..52181 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR016181 | Acyl_CoA_acyltransferase |
Blast
The following BLAST results are available for this feature:
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