|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057882 ID=TCONS_00057882|Name=TCONS_00057882|organism=Clytia hemisphaerica|type=transcript|length=1495bp
gGAATCAATTTGAAATGGATGGGTCGGAAAGTGAAGATTGTGGATGTGAA
AATTACGGAAGGGATGATGGAAGTAGTGATAATGAGGAGATAAAAACAAC
TGTCATGTTTGATTGGGAGATAGAAAAGTGTGATGCCGCCATTTTGACTT
ACGAAAAGACCAGTTTTGTCAAATCGGACTTTTTGTGATACGTTTTTGGC
AATCGTTTCAACGAAATAGTTGTCTTGACAACCGACAATGACCTTTCGGA
AAGTGGGATTGGCGAGGAGAGCAGATATGCGCAATACGAAATTGATGTCG
AGACGGAAAGCTTTTATAGCCAAGATAGTGTTGAACTGGCATTGTCTTTT
TATCATCCACTCcactcaaaatttgaaattgatgCGTTCACAGATTTTTA
TGGCCTTCTTCAAAGGTGTGTATTATGGAGCCTTCACAAACTCAAAGCGT
ATATAGAAGAATGTGCAATACACATACAAGCTCTCCATCCAAGTTAAGCT
ACGGTGGCATTCTGGATGACGCGCAGTTGAATCTCATCCTTTTGTGTGAC
GAATACGGACTGGAGAACTTATATCGTATGATTATGATCCAGAATCCGCG
AGTCGACCTTGCATCAATAAAAGACAACTACAAGTTCCACGGTCTCCACC
TTTTAACCAGATACGAGTTGATCAGAAACTCAGTGATTCAAATGTTCCAA
AAGAAATCTCACTCTATTGCAGCTGAGGTGGAAGATATTTTCAACTTCTA
TGATGTGTTGCTTTACGAAAATAGAACGCCTGACATCTCAGTCAAAAAAC
CTTTCAGAGAGAACGCTAGCTTTAACTTCGATCCCAAGGAGAAAGAAAAG
TTCTTAGCAGAACCGGCAGATGATCGTTTTGTAGTGTTGATAGTGGAGGG
AATGAAACTTCATGTCGATTCGTTCACCTTGGTCAATCAGTCACCAGTGT
TTAAAGAAATACTCGAAATAGCTCCTAGAAATAAAAGTGGGAAGAAGACG
TTGCCTGGACAGGGTGTCAATGAAGTTGCTCACCTTCTGACATTTTTAAC
TGAGCCCCGAGAAATAGAAGCGCAAAACACTGATTTGATGGCGTTGGCAA
ACCTTGCTCAAGAATACCAGATCgctttattaaaaaacaagattcgaatc
tttttggaaaatatcaaaGAAGAGAAGGCAGAAGAACAGTTAAAGTATCT
TAAACTTGTGAATATGATGAACTTCTCACAAATTGttcaattcaaaatat
ttgCTCAAATTGGTAAAGGTTTTCGAGATATCGATTGATCAAGGCATTTT
ACCTTTTGGAtgtgaaaacaatgaaactcgTGGCACAGTTTCGTCTATGG
TACCTTCTCTTTGCAAGCTTCAGCAATGACATATTAGACAATATACAAGA
CGAGATGAATGGCATTTTAGGAATGCACCTCTCGAGAAAGAAGGGAAGCT
GATATATGATCAGCTGAGATCGTTGTGTCGttgtgttattttttg Run BLAST on NCBI protein sequence of TCONS_00057882-protein >TCONS_00057882-protein ID=TCONS_00057882-protein|Name=TCONS_00057882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MEPSQTQSVYRRMCNTHTSSPSKLSYGGILDDAQLNLILLCDEYGLENLY
RMIMIQNPRVDLASIKDNYKFHGLHLLTRYELIRNSVIQMFQKKSHSIAA
EVEDIFNFYDVLLYENRTPDISVKKPFRENASFNFDPKEKEKFLAEPADD
RFVVLIVEGMKLHVDSFTLVNQSPVFKEILEIAPRNKSGKKTLPGQGVNE
VAHLLTFLTEPREIEAQNTDLMALANLAQEYQIALLKNKIRIFLENIKEE
KAEEQLKYLKLVNMMNFSQIVQFKIFAQIGKGFRDID Run BLAST on NCBI transcript from alignment at scaffold_300:54932..57015+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057882 ID=TCONS_00057882|Name=TCONS_00057882|organism=Clytia hemisphaerica|type=transcript|length=2084bp|location=Sequence derived from alignment at scaffold_300:54932..57015+ (Clytia hemisphaerica)
gGAATCAATTTGAAATGGATGGGTCGGAAAGTGAAGATTGTGGATGTGAA
AATTACGGAAGGGATGATGGAAGTAGTGATAATGAGGAGATAAAAACAAC
TGTCATGTTTGATTGGGAGATAGAAAAGTGTGATGCCGCCATTTTGACTT
ACGAAAAGACCAGTTTTGTCAAATCGGACTTTTTGTGATACGTTTTTGGC
AATCGTTTCAACGAAATAGTTGTCTTGACAACCGACAATGACCTTTCGGA
AAGTGGGATTGGCGAGGAGAGCAGATATGCGCAATACGAAATTGATGTCG
AGACGGAAAGCTTTTATAGCCAAGATAGTGTTGAACTGGCATTGTCTTTT
TATCATCCACTCcactcaaaatttgaaattgatgGTAGGTCTGGATTTGG
GGAATCAGGGGCTTCTCAATCCCCTGTTCCAAAGTCATTCTTATTGGATC
AGtttgataattattttcaatttatagAACGTCTATCGGTTTTTTATAGT
TATTATTAAAAACGGAAAAGAATCCATGTAAAAAAATCCTTGAAATTTAA
GCCagtttattacaaaattgttcaatttcaaaataaagattttgttaaaa
ttatcattttttgtcTCGTTATAGCGTTCACAGATTTTTATGGCCTTCTT
CAAAGGTGTGTATTATGGAGCCTTCACAAACTCAAAGCGTATATAGAAGA
ATGTGCAATACACATACAAGCTCTCCATCCAAGTTAAGCTACGGTGGCAT
TCTGGATGACGCGCAGTTGAATCTCATCCTTTTGTGTGACGAATACGGAC
TGGAGAACTTATATCGTATGATTATGATCCAGAATCCGCGAGTCGACCTT
GCATCAATAAAAGACAACTACAAGTTCCACGGTCTCCACCTTTTAACCAG
ATACGAGTTGATCAGAAACTCAGTGATTCAAATGTTCCAAAAGAAATCTC
ACTCTATTGCAGCTGAGGTGGAAGATATTTTCAACTTCTATGATGTGTTG
CTTTACGAAAATAGAACGCCTGACATCTCAGTCAAAAAACCTTTCAGAGA
GAACGCTAGCTTTAACTTCGATCCCAAGGAGAAAGAAAAGTTCTTAGCAG
AACCGGCAGATGATCGTTTTGTAGTGTTGATAGTGGAGGGAATGAAACTT
CATGTCGATTCGTTCACCTTGGTCAATCAGTCACCAGTGTTTAAAGAAAT
ACTCGAAATAGCTCCTAGAAATAAAAGTGGGAAGAAGACGTTGCCTGGAC
AGGGTGTCAATGAAGTTGCTCACCTTCTGACATTTTTAACTGAGCCCCGA
GAAATAGAAGGTTTGATCGGTTTGATCGGTTtgatttttccttttaaaag
tttaactttaggtttaaaaaaattctgtagTCACGATCCGTCCGGTAGCA
TTAAATAATTGTTCACGACTTTTAAGCCTTTTCTTTCCACAATATAGTTT
GTACAAAAAAGCTATCGTATTATTCAGATGATAATGTGCAATTCCAAAGA
AATTAGTGGTTTTGAGTccataaaaccttaaaatgttcttataaaggcTG
CATGTATTAGATCGTGGTATTTCATTTTCGTGGTATTTCATTTTCGTGGT
GTTTCATTTTTAGCAATATTTGAATGATGATTTATTATCTTGGTTCGTTT
TTCTTTCAGCGCAAAACACTGATTTGATGGCGTTGGCAAACCTTGCTCAA
GAATACCAGATCgctttattaaaaaacaagattcgaatctttttggaaaa
tatcaaaGAAGAGAAGGCAGAAGAACAGTTAAAGTATCTTAAACTTGTGA
ATATGATGAACTTCTCACAAATTGttcaattcaaaatatttgCTCAAATT
GGTAAAGGTTTTCGAGATATCGATTGATCAAGGCATTTTACCTTTTGGAt
gtgaaaacaatgaaactcgTGGCACAGTTTCGTCTATGGTACCTTCTCTT
TGCAAGCTTCAGCAATGACATATTAGACAATATACAAGACGAGATGAATG
GCATTTTAGGAATGCACCTCTCGAGAAAGAAGGGAAGCTGATATATGATC
AGCTGAGATCGTTGTGTCGttgtgttattttttg Coding sequence (CDS) from alignment at scaffold_300:54932..57015+ >TCONS_00057882 ID=TCONS_00057882|Name=TCONS_00057882|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_300:54932..57015+ (Clytia hemisphaerica)
ATGGAGCCTTCACAAACTCAAAGCGTATATAGAAGAATGTGCAATACACA
TACAAGCTCTCCATCCAAGTTAAGCTACGGTGGCATTCTGGATGACGCGC
AGTTGAATCTCATCCTTTTGTGTGACGAATACGGACTGGAGAACTTATAT
CGTATGATTATGATCCAGAATCCGCGAGTCGACCTTGCATCAATAAAAGA
CAACTACAAGTTCCACGGTCTCCACCTTTTAACCAGATACGAGTTGATCA
GAAACTCAGTGATTCAAATGTTCCAAAAGAAATCTCACTCTATTGCAGCT
GAGGTGGAAGATATTTTCAACTTCTATGATGTGTTGCTTTACGAAAATAG
AACGCCTGACATCTCAGTCAAAAAACCTTTCAGAGAGAACGCTAGCTTTA
ACTTCGATCCCAAGGAGAAAGAAAAGTTCTTAGCAGAACCGGCAGATGAT
CGTTTTGTAGTGTTGATAGTGGAGGGAATGAAACTTCATGTCGATTCGTT
CACCTTGGTCAATCAGTCACCAGTGTTTAAAGAAATACTCGAAATAGCTC
CTAGAAATAAAAGTGGGAAGAAGACGTTGCCTGGACAGGGTGTCAATGAA
GTTGCTCACCTTCTGACATTTTTAACTGAGCCCCGAGAAATAGAAGCGCA
AAACACTGATTTGATGGCGTTGGCAAACCTTGCTCAAGAATACCAGATCg
ctttattaaaaaacaagattcgaatctttttggaaaatatcaaaGAAGAG
AAGGCAGAAGAACAGTTAAAGTATCTTAAACTTGTGAATATGATGAACTT
CTCACAAATTGttcaattcaaaatatttgCTCAAATTGGTAAAGGTTTTC
GAGATATCGATTGAATGGAGCCTTCACAAACTCAAAGCGTATATAGAAGA
ATGTGCAATACACATACAAGCTCTCCATCCAAGTTAAGCTACGGTGGCAT
TCTGGATGACGCGCAGTTGAATCTCATCCTTTTGTGTGACGAATACGGAC
TGGAGAACTTATATCGTATGATTATGATCCAGAATCCGCGAGTCGACCTT
GCATCAATAAAAGACAACTACAAGTTCCACGGTCTCCACCTTTTAACCAG
ATACGAGTTGATCAGAAACTCAGTGATTCAAATGTTCCAAAAGAAATCTC
ACTCTATTGCAGCTGAGGTGGAAGATATTTTCAACTTCTATGATGTGTTG
CTTTACGAAAATAGAACGCCTGACATCTCAGTCAAAAAACCTTTCAGAGA
GAACGCTAGCTTTAACTTCGATCCCAAGGAGAAAGAAAAGTTCTTAGCAG
AACCGGCAGATGATCGTTTTGTAGTGTTGATAGTGGAGGGAATGAAACTT
CATGTCGATTCGTTCACCTTGGTCAATCAGTCACCAGTGTTTAAAGAAAT
ACTCGAAATAGCTCCTAGAAATAAAAGTGGGAAGAAGACGTTGCCTGGAC
AGGGTGTCAATGAAGTTGCTCACCTTCTGACATTTTTAACTGAGCCCCGA
GAAATAGAAGCGCAAAACACTGATTTGATGGCGTTGGCAAACCTTGCTCA
AGAATACCAGATCgctttattaaaaaacaagattcgaatctttttggaaa
atatcaaaGAAGAGAAGGCAGAAGAACAGTTAAAGTATCTTAAACTTGTG
AATATGATGAACTTCTCACAAATTGttcaattcaaaatatttgCTCAAAT
TGGTAAAGGTTTTCGAGATATCGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057882-exon-scaffold_300-1491911889:54932..55315 | TCONS_00057882-exon-scaffold_300-1491911889:54932..55315 | Clytia hemisphaerica | exon |
| TCONS_00057882-exon-scaffold_300-1510915933:54932..55315 | TCONS_00057882-exon-scaffold_300-1510915933:54932..55315 | Clytia hemisphaerica | exon |
| TCONS_00057882-exon-scaffold_300-1575043694:54932..55315 | TCONS_00057882-exon-scaffold_300-1575043694:54932..55315 | Clytia hemisphaerica | exon |
| TCONS_00057882-exon-scaffold_300-1491911889:55556..56241 | TCONS_00057882-exon-scaffold_300-1491911889:55556..56241 | Clytia hemisphaerica | exon |
| TCONS_00057882-exon-scaffold_300-1510915933:55556..56241 | TCONS_00057882-exon-scaffold_300-1510915933:55556..56241 | Clytia hemisphaerica | exon |
| TCONS_00057882-exon-scaffold_300-1575043694:55556..56241 | TCONS_00057882-exon-scaffold_300-1575043694:55556..56241 | Clytia hemisphaerica | exon |
| TCONS_00057882-exon-scaffold_300-1491911889:56591..57015 | TCONS_00057882-exon-scaffold_300-1491911889:56591..57015 | Clytia hemisphaerica | exon |
| TCONS_00057882-exon-scaffold_300-1510915933:56591..57015 | TCONS_00057882-exon-scaffold_300-1510915933:56591..57015 | Clytia hemisphaerica | exon |
| TCONS_00057882-exon-scaffold_300-1575043694:56591..57015 | TCONS_00057882-exon-scaffold_300-1575043694:56591..57015 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_300 | supercontig | scaffold_300:54932..57015 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|
