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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057884 ID=TCONS_00057884|Name=TCONS_00057884|organism=Clytia hemisphaerica|type=transcript|length=2134bp
ATCCCAGTTCATCTAAGAGTGTAACTATTCGATCAATATTTAATAGACAT
TGGTTAAAGCTTTTATTCATAGTTATCAAGTCATCAATGTAATCTGCGAT
GGTAATCTTTTCCTTACGCAATGTTGCTAAAGGTGGTTTCATCACCTTTG
TAAACTTACGTGGCCCTTCGGTATATCCATCAGGTAGAACTGTATACTTG
AATAATTTGTTATTATTCTTCAACTTTAGGTATTTCTGATGTTGATTTTG
AATTGGTATACTGTAGTATGCATCTTTAATGTCTAATTTTGACATGTACA
TGTTTGGTCTTATCATACACAGTATTGATGATAATGTATGCATTTTAAAT
TTCCTCTTTTCAATTGAGAAATTTAACCTCTTAAGGTTCAGAATAAACCG
ATGTCCCCCATCACTTTTTGGGGTTAAGAATGTAGGAGAAATAACCTCCC
CAGGTTCATGCTCGCACTCTATTAATACTCCCTTCGACACAAGTTTTTTG
ACTTCGTCTTCTTTTTGGTGAtcattctttttgtctattGGGTAGGTCAC
ACTGGTATTTGGCATTTCATCAATCGGTATTGGCATGCCTGACACAGTCT
CGAGTACCTCTTTATCAGAGGTAATATTTTTCCAGGACTGCATGTGATCT
TTCAATTGTCCTGCTTTAAACtgtttcactttaaatgttAAGTATGACTT
TACTTGTTCAATTTTTCTTACCTGTGTTCTTGTTAGTTCTTCTTGGTGCG
GTATTTCTTGTCCTGTTGGTACTTCTGGTTTGGGTATTTCTTCTTGTCTT
TGTAATGTTCTTGCGGCTTGTTCTCCTTGTATTCCACATTTCTTTGCCCG
TATGTCCTCTTCTGGGTCTTTGAAGAGGAATGGAAGTTTTTTGGTtcctc
aaactttctttttgtGCTCAGTAAGGCACATAAGTTGTTTTCCTTCTTCA
ACTTTTCCAACTTTTCACAAAGACCAGACCCAAATAACAGTTCTGATGTT
TCATCAGCCTCTGATGCCAACTTTTTGTATTCTCTTGGGAGGGTAGGTTT
GATAAAGTCTCTCCTGACCTGGTTTAGTTGTTGTGAAACATTACCAGCAA
GTGTCATTGAATCTTTCAGCTCAGTCAAGGCCTCCTTTATTTCCTTTGGC
ATCTTTTCTTTGAAAAGTCCTGTTAGGGTTGAGGCTGCTCTTAGCATTTT
TGTTGTTGCTGCTGAATGAATACTTTGAGCATGTTGGAGCTTGAAATCAG
TTGACCTATTGAATGTCCCCATTTTTGACCAGATTTCACTATTCACTTTC
TTGGACATCAGGAATTCGCAGTTTGATGGTATTACTGCCTGttccaattt
ctttttcaaactttcctgCTTTAGAGGACGACTCCAGAATATTTTTGCTG
CACCAGCAATTGATGAGGTGATTTCCGGGCCAGTAGCCTGGTTTGTGGCA
ACATAATCATCTGTCGCCTCGTTCCAGTACATTTGAGTAGGCTCCTCTGT
ATCGGATGCTTTTGAGGGAGACTTACCACTTTTTGTTGATCCATTTCCAC
CATGAGAACTGGATTGTTGGTTTGATTTAGTAATAGTAGATGTTTCAGTA
GAAGGATAACTTTTGTCACCAAGGTCCACAGATCCAAACCATCTATTTGA
TCCGGCTATGGATATGGTGTCTTCAGCAGGCGGAGTCAATTTTATGACAT
TAGGGCCTGTTTCTGAAACATTATTTTCTACTGGTGGCGGGGCCATATTG
GCATTGGGCCGATGAACAAGCATGTTCACTATTTTCACTAGCTCAttgat
ttgttgttgttgtggttctTGAGCCTGTCTGATTTCCTCTCTCAAGGTGT
TAGTTATTTGTGACAAGTCTATATCAAAAGGCGTTGCCATTCCTGGTGCT
TGTTGTCTCCTTAACAACAAGTCCTCTCCGCTGTTATTCATTCCAGCTTT
ACTCAAGAGTGGATCCAACTCTGAGTTTATCATATTTTATCTTTCTAAAA
ACAAACTTTCTAAGGGAAAACACACAATATTTTAGATATATACTTATCTT
ATCATCTGTTTTTTCATTTGCCTCTTCTTCTTCGTGCAGTCGCGTTTTTA
GACGGAAACGAAATAGGTCGTTTTTACGGAATCG Run BLAST on NCBI protein sequence of TCONS_00057884-protein >TCONS_00057884-protein ID=TCONS_00057884-protein|Name=TCONS_00057884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=416bp
MINSELDPLLSKAGMNNSGEDLLLRRQQAPGMATPFDIDLSQITNTLREE
IRQAQEPQQQQINELVKIVNMLVHRPNANMAPPPVENNVSETGPNVIKLT
PPAEDTISIAGSNRWFGSVDLGDKSYPSTETSTITKSNQQSSSHGGNGST
KSGKSPSKASDTEEPTQMYWNEATDDYVATNQATGPEITSSIAGAAKIFW
SRPLKQESLKKKLEQAVIPSNCEFLMSKKVNSEIWSKMGTFNRSTDFKLQ
HAQSIHSAATTKMLRAASTLTGLFKEKMPKEIKEALTELKDSMTLAGNVS
QQLNQVRRDFIKPTLPREYKKLASEADETSELLFGSGLCEKLEKLKKENN
LCALLSTKRKFEEPKNFHSSSKTQKRTYGQRNVEYKENKPQEHYKDKKKY
PNQKYQQDKKYRTKKN Run BLAST on NCBI transcript from alignment at scaffold_300:6666..8799 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057884 ID=TCONS_00057884|Name=TCONS_00057884|organism=Clytia hemisphaerica|type=transcript|length=2134bp|location=Sequence derived from alignment at scaffold_300:6666..8799 (Clytia hemisphaerica)
CGATTCCGTAAAAACGACCTATTTCGTTTCCGTCTAAAAACGCGACTGCA
CGAAGAAGAAGAGGCAAATGAAAAAACAGATGATAAGATAAGTATATATC
TAAAATATTGTGTGTTTTCCCTTAGAAAGTTTGTTTTTAGAAAGATAAAA
TATGATAAACTCAGAGTTGGATCCACTCTTGAGTAAAGCTGGAATGAATA
ACAGCGGAGAGGACTTGTTGTTAAGGAGACAACAAGCACCAGGAATGGCA
ACGCCTTTTGATATAGACTTGTCACAAATAACTAACACCTTGAGAGAGGA
AATCAGACAGGCTCAagaaccacaacaacaacaaatcaaTGAGCTAGTGA
AAATAGTGAACATGCTTGTTCATCGGCCCAATGCCAATATGGCCCCGCCA
CCAGTAGAAAATAATGTTTCAGAAACAGGCCCTAATGTCATAAAATTGAC
TCCGCCTGCTGAAGACACCATATCCATAGCCGGATCAAATAGATGGTTTG
GATCTGTGGACCTTGGTGACAAAAGTTATCCTTCTACTGAAACATCTACT
ATTACTAAATCAAACCAACAATCCAGTTCTCATGGTGGAAATGGATCAAC
AAAAAGTGGTAAGTCTCCCTCAAAAGCATCCGATACAGAGGAGCCTACTC
AAATGTACTGGAACGAGGCGACAGATGATTATGTTGCCACAAACCAGGCT
ACTGGCCCGGAAATCACCTCATCAATTGCTGGTGCAGCAAAAATATTCTG
GAGTCGTCCTCTAAAGcaggaaagtttgaaaaagaaattggaaCAGGCAG
TAATACCATCAAACTGCGAATTCCTGATGTCCAAGAAAGTGAATAGTGAA
ATCTGGTCAAAAATGGGGACATTCAATAGGTCAACTGATTTCAAGCTCCA
ACATGCTCAAAGTATTCATTCAGCAGCAACAACAAAAATGCTAAGAGCAG
CCTCAACCCTAACAGGACTTTTCAAAGAAAAGATGCCAAAGGAAATAAAG
GAGGCCTTGACTGAGCTGAAAGATTCAATGACACTTGCTGGTAATGTTTC
ACAACAACTAAACCAGGTCAGGAGAGACTTTATCAAACCTACCCTCCCAA
GAGAATACAAAAAGTTGGCATCAGAGGCTGATGAAACATCAGAACTGTTA
TTTGGGTCTGGTCTTTGTGAAAAGTTGGAAAAGTTGAAGAAGGAAAACAA
CTTATGTGCCTTACTGAGCacaaaaagaaagtttgaggaACCAAAAAACT
TCCATTCCTCTTCAAAGACCCAGAAGAGGACATACGGGCAAAGAAATGTG
GAATACAAGGAGAACAAGCCGCAAGAACATTACAAAGACAAGAAGAAATA
CCCAAACCAGAAGTACCAACAGGACAAGAAATACCGCACCAAGAAGAACT
AACAAGAACACAGGTAAGAAAAATTGAACAAGTAAAGTCATACTTaacat
ttaaagtgaaacaGTTTAAAGCAGGACAATTGAAAGATCACATGCAGTCC
TGGAAAAATATTACCTCTGATAAAGAGGTACTCGAGACTGTGTCAGGCAT
GCCAATACCGATTGATGAAATGCCAAATACCAGTGTGACCTACCCaatag
acaaaaagaatgaTCACCAAAAAGAAGACGAAGTCAAAAAACTTGTGTCG
AAGGGAGTATTAATAGAGTGCGAGCATGAACCTGGGGAGGTTATTTCTCC
TACATTCTTAACCCCAAAAAGTGATGGGGGACATCGGTTTATTCTGAACC
TTAAGAGGTTAAATTTCTCAATTGAAAAGAGGAAATTTAAAATGCATACA
TTATCATCAATACTGTGTATGATAAGACCAAACATGTACATGTCAAAATT
AGACATTAAAGATGCATACTACAGTATACCAATTCAAAATCAACATCAGA
AATACCTAAAGTTGAAGAATAATAACAAATTATTCAAGTATACAGTTCTA
CCTGATGGATATACCGAAGGGCCACGTAAGTTTACAAAGGTGATGAAACC
ACCTTTAGCAACATTGCGTAAGGAAAAGATTACCATCGCAGATTACATTG
ATGACTTGATAACTATGAATAAAAGCTTTAACCAATGTCTATTAAATATT
GATCGAATAGTTACACTCTTAGATGAACTGGGAT Coding sequence (CDS) from alignment at scaffold_300:6666..8799 >TCONS_00057884 ID=TCONS_00057884|Name=TCONS_00057884|organism=Clytia hemisphaerica|type=CDS|length=1251bp|location=Sequence derived from alignment at scaffold_300:6666..8799 (Clytia hemisphaerica)
ATGATAAACTCAGAGTTGGATCCACTCTTGAGTAAAGCTGGAATGAATAA
CAGCGGAGAGGACTTGTTGTTAAGGAGACAACAAGCACCAGGAATGGCAA
CGCCTTTTGATATAGACTTGTCACAAATAACTAACACCTTGAGAGAGGAA
ATCAGACAGGCTCAagaaccacaacaacaacaaatcaaTGAGCTAGTGAA
AATAGTGAACATGCTTGTTCATCGGCCCAATGCCAATATGGCCCCGCCAC
CAGTAGAAAATAATGTTTCAGAAACAGGCCCTAATGTCATAAAATTGACT
CCGCCTGCTGAAGACACCATATCCATAGCCGGATCAAATAGATGGTTTGG
ATCTGTGGACCTTGGTGACAAAAGTTATCCTTCTACTGAAACATCTACTA
TTACTAAATCAAACCAACAATCCAGTTCTCATGGTGGAAATGGATCAACA
AAAAGTGGTAAGTCTCCCTCAAAAGCATCCGATACAGAGGAGCCTACTCA
AATGTACTGGAACGAGGCGACAGATGATTATGTTGCCACAAACCAGGCTA
CTGGCCCGGAAATCACCTCATCAATTGCTGGTGCAGCAAAAATATTCTGG
AGTCGTCCTCTAAAGcaggaaagtttgaaaaagaaattggaaCAGGCAGT
AATACCATCAAACTGCGAATTCCTGATGTCCAAGAAAGTGAATAGTGAAA
TCTGGTCAAAAATGGGGACATTCAATAGGTCAACTGATTTCAAGCTCCAA
CATGCTCAAAGTATTCATTCAGCAGCAACAACAAAAATGCTAAGAGCAGC
CTCAACCCTAACAGGACTTTTCAAAGAAAAGATGCCAAAGGAAATAAAGG
AGGCCTTGACTGAGCTGAAAGATTCAATGACACTTGCTGGTAATGTTTCA
CAACAACTAAACCAGGTCAGGAGAGACTTTATCAAACCTACCCTCCCAAG
AGAATACAAAAAGTTGGCATCAGAGGCTGATGAAACATCAGAACTGTTAT
TTGGGTCTGGTCTTTGTGAAAAGTTGGAAAAGTTGAAGAAGGAAAACAAC
TTATGTGCCTTACTGAGCacaaaaagaaagtttgaggaACCAAAAAACTT
CCATTCCTCTTCAAAGACCCAGAAGAGGACATACGGGCAAAGAAATGTGG
AATACAAGGAGAACAAGCCGCAAGAACATTACAAAGACAAGAAGAAATAC
CCAAACCAGAAGTACCAACAGGACAAGAAATACCGCACCAAGAAGAACTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057884-exon-scaffold_300-1491911889:6666..8799 | TCONS_00057884-exon-scaffold_300-1491911889:6666..8799 | Clytia hemisphaerica | exon |
| TCONS_00057884-exon-scaffold_300-1510915933:6666..8799 | TCONS_00057884-exon-scaffold_300-1510915933:6666..8799 | Clytia hemisphaerica | exon |
| TCONS_00057884-exon-scaffold_300-1575043694:6666..8799 | TCONS_00057884-exon-scaffold_300-1575043694:6666..8799 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_300 | supercontig | scaffold_300:6666..8799 . |
Blast
The following BLAST results are available for this feature:
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