|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057888 ID=TCONS_00057888|Name=TCONS_00057888|organism=Clytia hemisphaerica|type=transcript|length=1150bp
GAtggtattttcattttttcttttggatAGTTCCGCCGCATACTACGACG
ATCGCTTGGCGTGAGAGGTCGTGAGAAGGGAAGGATTAGGTCACATTTCA
TCTTTTTTCTCAGTATAACCATTTATCAAACTGTTCTTCTTTTTTAGtga
tagaaaaatcaaaaaaaaggaaattttgtattttgggAATTGATGTGTTT
TTAGAAAAGGATAGAAAATGCCGTGTCGTGACTTTACAGCAGAAGATATA
GTCACAATTTGTAGTGAAATCGCTAAACGCGACAACATTCGCGTGCAGTT
GAACCAAAAGAAATCCAGTGGATTTTTCCGCCGTTCCTCGAGCACTTTGA
GTACATCCAGTGAAACCTCAGCCTTAGCACGTCGTATGAGCATACAAAAT
GGTATCCCATGCGTCGATCCGAACGCCAGAAGCGTATCGAGAAAATCTTC
CGTCGAAGTCAGTCCAACGCAACGAAAGGCACCACGAAACCCTTTTGAAC
CAAAAGTCGCCGGTTTGAAAGGTCGAGATGTGGTTGCTATGGCAATCTTA
GTAAATGATGAAGGACTTCCCATTCGTACGTACACCGAAACTCAACAAAT
TCCTAGCGACGAAGTAGACGCTgcagatcatatttttctttcgcGCGTAC
CAGTTTCGACCGCGCGACTTTCACCAGAACTAAACAACAACAATATGAAC
AGCAAAGACAATTATACAGCGTTGGCTGACCTTCTGCAAGATTTAGACAA
CAAGCAATCCACAAAACTTTTAAGACGTTTAGAAAGAATTCTCATCAAAC
TTCACACTACAGACCTGAATACAGCTCTCTCTTTTCTTAAAATTGAACGC
TATGAGGAAGTGCGACGTGAAGCGAAGGAAGAGCTCTTAACATTTGCGGT
CAAAGAGATGAAAGTGACGTTGTGAATCACTCTCCGCTTGGTGAACTTTA
AAAACgagattttctttattttcatttgtttttcttattttgtatTTCTA
ACAACAACATAATATATTGCACCCAAACATCGTAATGATTATAAAAACTG
ACATGGCCTTTTCCTTTATCTGTGGCTTGTTTTACGATCGGTCTGTTTAG
GTAGAAATGCAGGGACTTAAAAGGGGAAATTCAGGATGTTCAGACAAACA Run BLAST on NCBI protein sequence of TCONS_00057888-protein >TCONS_00057888-protein ID=TCONS_00057888-protein|Name=TCONS_00057888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MPCRDFTAEDIVTICSEIAKRDNIRVQLNQKKSSGFFRRSSSTLSTSSET
SALARRMSIQNGIPCVDPNARSVSRKSSVEVSPTQRKAPRNPFEPKVAGL
KGRDVVAMAILVNDEGLPIRTYTETQQIPSDEVDAADHIFLSRVPVSTAR
LSPELNNNNMNSKDNYTALADLLQDLDNKQSTKLLRRLERILIKLHTTDL
NTALSFLKIERYEEVRREAKEELLTFAVKEMKVTL Run BLAST on NCBI transcript from alignment at scaffold_300:44129..45278 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057888 ID=TCONS_00057888|Name=TCONS_00057888|organism=Clytia hemisphaerica|type=transcript|length=1150bp|location=Sequence derived from alignment at scaffold_300:44129..45278 (Clytia hemisphaerica)
TGTTTGTCTGAACATCCTGAATTTCCCCTTTTAAGTCCCTGCATTTCTAC
CTAAACAGACCGATCGTAAAACAAGCCACAGATAAAGGAAAAGGCCATGT
CAGTTTTTATAATCATTACGATGTTTGGGTGCAATATATTATGTTGTTGT
TAGAAatacaaaataagaaaaacaaatgaaaataaagaaaatctcGTTTT
TAAAGTTCACCAAGCGGAGAGTGATTCACAACGTCACTTTCATCTCTTTG
ACCGCAAATGTTAAGAGCTCTTCCTTCGCTTCACGTCGCACTTCCTCATA
GCGTTCAATTTTAAGAAAAGAGAGAGCTGTATTCAGGTCTGTAGTGTGAA
GTTTGATGAGAATTCTTTCTAAACGTCTTAAAAGTTTTGTGGATTGCTTG
TTGTCTAAATCTTGCAGAAGGTCAGCCAACGCTGTATAATTGTCTTTGCT
GTTCATATTGTTGTTGTTTAGTTCTGGTGAAAGTCGCGCGGTCGAAACTG
GTACGCgcgaaagaaaaatatgatctgcAGCGTCTACTTCGTCGCTAGGA
ATTTGTTGAGTTTCGGTGTACGTACGAATGGGAAGTCCTTCATCATTTAC
TAAGATTGCCATAGCAACCACATCTCGACCTTTCAAACCGGCGACTTTTG
GTTCAAAAGGGTTTCGTGGTGCCTTTCGTTGCGTTGGACTGACTTCGACG
GAAGATTTTCTCGATACGCTTCTGGCGTTCGGATCGACGCATGGGATACC
ATTTTGTATGCTCATACGACGTGCTAAGGCTGAGGTTTCACTGGATGTAC
TCAAAGTGCTCGAGGAACGGCGGAAAAATCCACTGGATTTCTTTTGGTTC
AACTGCACGCGAATGTTGTCGCGTTTAGCGATTTCACTACAAATTGTGAC
TATATCTTCTGCTGTAAAGTCACGACACGGCATTTTCTATCCTTTTCTAA
AAACACATCAATTcccaaaatacaaaatttccttttttttgatttttcta
tcaCTAAAAAAGAAGAACAGTTTGATAAATGGTTATACTGAGAAAAAAGA
TGAAATGTGACCTAATCCTTCCCTTCTCACGACCTCTCACGCCAAGCGAT
CGTCGTAGTATGCGGCGGAACTatccaaaagaaaaaatgaaaataccaTC
Coding sequence (CDS) from alignment at scaffold_300:44129..45278 >TCONS_00057888 ID=TCONS_00057888|Name=TCONS_00057888|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_300:44129..45278 (Clytia hemisphaerica)
TCACAACGTCACTTTCATCTCTTTGACCGCAAATGTTAAGAGCTCTTCCT
TCGCTTCACGTCGCACTTCCTCATAGCGTTCAATTTTAAGAAAAGAGAGA
GCTGTATTCAGGTCTGTAGTGTGAAGTTTGATGAGAATTCTTTCTAAACG
TCTTAAAAGTTTTGTGGATTGCTTGTTGTCTAAATCTTGCAGAAGGTCAG
CCAACGCTGTATAATTGTCTTTGCTGTTCATATTGTTGTTGTTTAGTTCT
GGTGAAAGTCGCGCGGTCGAAACTGGTACGCgcgaaagaaaaatatgatc
tgcAGCGTCTACTTCGTCGCTAGGAATTTGTTGAGTTTCGGTGTACGTAC
GAATGGGAAGTCCTTCATCATTTACTAAGATTGCCATAGCAACCACATCT
CGACCTTTCAAACCGGCGACTTTTGGTTCAAAAGGGTTTCGTGGTGCCTT
TCGTTGCGTTGGACTGACTTCGACGGAAGATTTTCTCGATACGCTTCTGG
CGTTCGGATCGACGCATGGGATACCATTTTGTATGCTCATACGACGTGCT
AAGGCTGAGGTTTCACTGGATGTACTCAAAGTGCTCGAGGAACGGCGGAA
AAATCCACTGGATTTCTTTTGGTTCAACTGCACGCGAATGTTGTCGCGTT
TAGCGATTTCACTACAAATTGTGACTATATCTTCTGCTGTAAAGTCACGA
CACGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057888-exon-scaffold_300-1491911889:44129..45278 | TCONS_00057888-exon-scaffold_300-1491911889:44129..45278 | Clytia hemisphaerica | exon |
| TCONS_00057888-exon-scaffold_300-1510915933:44129..45278 | TCONS_00057888-exon-scaffold_300-1510915933:44129..45278 | Clytia hemisphaerica | exon |
| TCONS_00057888-exon-scaffold_300-1575043694:44129..45278 | TCONS_00057888-exon-scaffold_300-1575043694:44129..45278 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_300 | supercontig | scaffold_300:44129..45278 . |
Blast
The following BLAST results are available for this feature:
|
