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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057889 ID=TCONS_00057889|Name=TCONS_00057889|organism=Clytia hemisphaerica|type=transcript|length=1456bp
AAAAAAATAATGTTGACATCGGACGAAACAACAGCAGCCATCACAGAATG
GAAATCATCGCGAAGAAgaactttcattttattttgttttttcaccAGTG
TCATCGGAACAGAATACTCCATCGTCACACCATCGTTGTTGACATATCTC
CAagacgtcatcaaagttgaaaaCGAGGCTGTCTGGTTCGCAGCAATCGT
CTCAATATACTGGTCATCTTCTATGGTTGGTAGCATGTTTATCAGTAAAT
ACGCAGATCGCTCCCGGAACATTCGACAATGTTGCACAGTTGTCTTCATC
ATCGCATCTCTGGGGAATTTCGTTTACGCTGTGCCTTACTCTCCTCTCTT
CCCATTGGTCGGAAGAATGCTTCAAGGATTTGGAGATTCTTTGATTTCAG
TAATAACAGGAGAAGTTGTGAGAGTTTATCCTGAAGATGAAGTCTTATCC
AAAGTCTCTATCTTGATATCGAATTATTACGTCACCTTCATCTTGGGACC
AGTGTTGAGCCTCATGTTCAGTAGAGTCAACTTTCGATTTATGGACATTC
CGTTCACAGTGACCAACCTTCCAAACCTCATCCTGGGTTTCGTCTGGTTG
CTCTGCATCCTTCTCAACATGACGTGCGTCCGAAATCTTTCCAAAGAGTA
TGATCTGAAATCAGAGCAGCAAACCGTTGAGAAAGAGTTgcgaaaaattg
aagaagaaaaacgtTTTCTTGAGAATCACACAGAAGTGAGTTACGGCACG
ATGGAaaaatttgtggttttgatCCCTCCAAAACAAATTGACGGAGAGAG
TCAGCATTTTTCCACAAAAGTAACAATTTCAACCATAAAATCATACGAAA
ATTCTTCCGATGTTTCGATCACACGATTTTTGCGTTTGAAAGAATTTCGT
GTTATTCTCATCATCAACTTCCTGTGTGCGTACATCAGTGTGGCCTTCTT
CGACGTGGCCCTTCCCTTCCTTTGCACCAAGTTGTATGAAATGAAGTTGG
AAATGACAGGTGTCTTATTCTCCACAACTGGATTAGCATTCGTTGtgact
ttgattttcattttgcgACGAATGAAGTTTATGAAGAACGAAATCATTTT
TATCATTGTCGGTATGAGCATGTTTATTGTGGCTTTGCAGTCAATGAGCA
TCTCCATCATGGTGAGGGGTGTCCGTCCCTTGGGATACACATTCCTCGCT
CTCTACTCCATCCTATTTGGTATCAGTTGGTCGGTGGAGCAAGTTTTACT
CGGAGTGATTGTTGCAAAAATGATTCCTTCAAATCATCAAAGTTACGCCG
AAGGAATTCGCCGATCGGTGAGTTCGATTGCGTACGTCGCCGCTGGATGC
GTCACGCCTCTCCTGACTGACCACCTGGTTGAACAGCTGATCATAATTTC
TCTGTTTTTATTCTTAagtgttttttatctttttatgagtgatctgaaat
ttcaaa Run BLAST on NCBI protein sequence of TCONS_00057889-protein >TCONS_00057889-protein ID=TCONS_00057889-protein|Name=TCONS_00057889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
KKIMLTSDETTAAITEWKSSRRRTFILFCFFTSVIGTEYSIVTPSLLTYL
QDVIKVENEAVWFAAIVSIYWSSSMVGSMFISKYADRSRNIRQCCTVVFI
IASLGNFVYAVPYSPLFPLVGRMLQGFGDSLISVITGEVVRVYPEDEVLS
KVSILISNYYVTFILGPVLSLMFSRVNFRFMDIPFTVTNLPNLILGFVWL
LCILLNMTCVRNLSKEYDLKSEQQTVEKELRKIEEEKRFLENHTEVSYGT
MEKFVVLIPPKQIDGESQHFSTKVTISTIKSYENSSDVSITRFLRLKEFR
VILIINFLCAYISVAFFDVALPFLCTKLYEMKLEMTGVLFSTTGLAFVVT
LIFILRRMKFMKNEIIFIIVGMSMFIVALQSMSISIMVRGVRPLGYTFLA
LYSILFGISWSVEQVLLGVIVAKMIPSNHQSYAEGIRRSVSSIAYVAAGC
VTPLLTDHLVEQLIIISLFLFLSVFYLFMSDLKFQ Run BLAST on NCBI transcript from alignment at scaffold_300:61529..62984 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057889 ID=TCONS_00057889|Name=TCONS_00057889|organism=Clytia hemisphaerica|type=transcript|length=1456bp|location=Sequence derived from alignment at scaffold_300:61529..62984 (Clytia hemisphaerica)
tttgaaatttcagatcactcataaaaagataaaaaacactTAAGAATAAA
AACAGAGAAATTATGATCAGCTGTTCAACCAGGTGGTCAGTCAGGAGAGG
CGTGACGCATCCAGCGGCGACGTACGCAATCGAACTCACCGATCGGCGAA
TTCCTTCGGCGTAACTTTGATGATTTGAAGGAATCATTTTTGCAACAATC
ACTCCGAGTAAAACTTGCTCCACCGACCAACTGATACCAAATAGGATGGA
GTAGAGAGCGAGGAATGTGTATCCCAAGGGACGGACACCCCTCACCATGA
TGGAGATGCTCATTGACTGCAAAGCCACAATAAACATGCTCATACCGACA
ATGATAAAAATGATTTCGTTCTTCATAAACTTCATTCGTcgcaaaatgaa
aatcaaagtcaCAACGAATGCTAATCCAGTTGTGGAGAATAAGACACCTG
TCATTTCCAACTTCATTTCATACAACTTGGTGCAAAGGAAGGGAAGGGCC
ACGTCGAAGAAGGCCACACTGATGTACGCACACAGGAAGTTGATGATGAG
AATAACACGAAATTCTTTCAAACGCAAAAATCGTGTGATCGAAACATCGG
AAGAATTTTCGTATGATTTTATGGTTGAAATTGTTACTTTTGTGGAAAAA
TGCTGACTCTCTCCGTCAATTTGTTTTGGAGGGatcaaaaccacaaattt
tTCCATCGTGCCGTAACTCACTTCTGTGTGATTCTCAAGAAAacgttttt
cttcttcaatttttcgcAACTCTTTCTCAACGGTTTGCTGCTCTGATTTC
AGATCATACTCTTTGGAAAGATTTCGGACGCACGTCATGTTGAGAAGGAT
GCAGAGCAACCAGACGAAACCCAGGATGAGGTTTGGAAGGTTGGTCACTG
TGAACGGAATGTCCATAAATCGAAAGTTGACTCTACTGAACATGAGGCTC
AACACTGGTCCCAAGATGAAGGTGACGTAATAATTCGATATCAAGATAGA
GACTTTGGATAAGACTTCATCTTCAGGATAAACTCTCACAACTTCTCCTG
TTATTACTGAAATCAAAGAATCTCCAAATCCTTGAAGCATTCTTCCGACC
AATGGGAAGAGAGGAGAGTAAGGCACAGCGTAAACGAAATTCCCCAGAGA
TGCGATGATGAAGACAACTGTGCAACATTGTCGAATGTTCCGGGAGCGAT
CTGCGTATTTACTGATAAACATGCTACCAACCATAGAAGATGACCAGTAT
ATTGAGACGATTGCTGCGAACCAGACAGCCTCGttttcaactttgatgac
gtctTGGAGATATGTCAACAACGATGGTGTGACGATGGAGTATTCTGTTC
CGATGACACTggtgaaaaaacaaaataaaatgaaagttcTTCTTCGCGAT
GATTTCCATTCTGTGATGGCTGCTGTTGTTTCGTCCGATGTCAACATTAT
TTTTTT Coding sequence (CDS) from alignment at scaffold_300:61529..62984 >TCONS_00057889 ID=TCONS_00057889|Name=TCONS_00057889|organism=Clytia hemisphaerica|type=CDS|length=1455bp|location=Sequence derived from alignment at scaffold_300:61529..62984 (Clytia hemisphaerica)
ttgaaatttcagatcactcataaaaagataaaaaacactTAAGAATAAAA
ACAGAGAAATTATGATCAGCTGTTCAACCAGGTGGTCAGTCAGGAGAGGC
GTGACGCATCCAGCGGCGACGTACGCAATCGAACTCACCGATCGGCGAAT
TCCTTCGGCGTAACTTTGATGATTTGAAGGAATCATTTTTGCAACAATCA
CTCCGAGTAAAACTTGCTCCACCGACCAACTGATACCAAATAGGATGGAG
TAGAGAGCGAGGAATGTGTATCCCAAGGGACGGACACCCCTCACCATGAT
GGAGATGCTCATTGACTGCAAAGCCACAATAAACATGCTCATACCGACAA
TGATAAAAATGATTTCGTTCTTCATAAACTTCATTCGTcgcaaaatgaaa
atcaaagtcaCAACGAATGCTAATCCAGTTGTGGAGAATAAGACACCTGT
CATTTCCAACTTCATTTCATACAACTTGGTGCAAAGGAAGGGAAGGGCCA
CGTCGAAGAAGGCCACACTGATGTACGCACACAGGAAGTTGATGATGAGA
ATAACACGAAATTCTTTCAAACGCAAAAATCGTGTGATCGAAACATCGGA
AGAATTTTCGTATGATTTTATGGTTGAAATTGTTACTTTTGTGGAAAAAT
GCTGACTCTCTCCGTCAATTTGTTTTGGAGGGatcaaaaccacaaatttt
TCCATCGTGCCGTAACTCACTTCTGTGTGATTCTCAAGAAAacgtttttc
ttcttcaatttttcgcAACTCTTTCTCAACGGTTTGCTGCTCTGATTTCA
GATCATACTCTTTGGAAAGATTTCGGACGCACGTCATGTTGAGAAGGATG
CAGAGCAACCAGACGAAACCCAGGATGAGGTTTGGAAGGTTGGTCACTGT
GAACGGAATGTCCATAAATCGAAAGTTGACTCTACTGAACATGAGGCTCA
ACACTGGTCCCAAGATGAAGGTGACGTAATAATTCGATATCAAGATAGAG
ACTTTGGATAAGACTTCATCTTCAGGATAAACTCTCACAACTTCTCCTGT
TATTACTGAAATCAAAGAATCTCCAAATCCTTGAAGCATTCTTCCGACCA
ATGGGAAGAGAGGAGAGTAAGGCACAGCGTAAACGAAATTCCCCAGAGAT
GCGATGATGAAGACAACTGTGCAACATTGTCGAATGTTCCGGGAGCGATC
TGCGTATTTACTGATAAACATGCTACCAACCATAGAAGATGACCAGTATA
TTGAGACGATTGCTGCGAACCAGACAGCCTCGttttcaactttgatgacg
tctTGGAGATATGTCAACAACGATGGTGTGACGATGGAGTATTCTGTTCC
GATGACACTggtgaaaaaacaaaataaaatgaaagttcTTCTTCGCGATG
ATTTCCATTCTGTGATGGCTGCTGTTGTTTCGTCCGATGTCAACATTATT
TTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057889-exon-scaffold_300-1491911889:61529..62984 | TCONS_00057889-exon-scaffold_300-1491911889:61529..62984 | Clytia hemisphaerica | exon |
| TCONS_00057889-exon-scaffold_300-1510915933:61529..62984 | TCONS_00057889-exon-scaffold_300-1510915933:61529..62984 | Clytia hemisphaerica | exon |
| TCONS_00057889-exon-scaffold_300-1575043694:61529..62984 | TCONS_00057889-exon-scaffold_300-1575043694:61529..62984 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_300 | supercontig | scaffold_300:61529..62984 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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