TCONS_00057890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057890
Unique NameTCONS_00057890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057890 ID=TCONS_00057890|Name=TCONS_00057890|organism=Clytia hemisphaerica|type=transcript|length=284bp
TTCGAGATGACCTAGAGACCTCCTCCACCCCTTTGGTCAGATCCATCCCC
GAGCCGTCACAAAATATGAAATCTCTTGGATCGCTATANCTTTGGTCAGA
TCCATCCCCGAGCCGTCACAAAATATGAAATCTCTTGGATCGCTATACAT
TAGTTTGATTGTGTGGTCGTCCAGACATAAAAATTTTGGGGGAACCTTCC
CATTGGTAACCATAAATCTTGCTACGATGTTTGGACCAAAAAATTCATGT
ACTCCCGATGACAAACGTTTTCTGTATATTGTTC
Run BLAST on NCBI

transcript from alignment at scaffold_300:69391..69674

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057890 ID=TCONS_00057890|Name=TCONS_00057890|organism=Clytia hemisphaerica|type=transcript|length=284bp|location=Sequence derived from alignment at scaffold_300:69391..69674 (Clytia hemisphaerica)
GAACAATATACAGAAAACGTTTGTCATCGGGAGTACATGAATTTTTTGGT
CCAAACATCGTAGCAAGATTTATGGTTACCAATGGGAAGGTTCCCCCAAA
ATTTTTATGTCTGGACGACCACACAATCAAACTAATGTATAGCGATCCAA
GAGATTTCATATTTTGTGACGGCTCGGGGATGGATCTGACCAAAGNTATA
GCGATCCAAGAGATTTCATATTTTGTGACGGCTCGGGGATGGATCTGACC
AAAGGGGTGGAGGAGGTCTCTAGGTCATCTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036500XLOC_036500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057890-exon-scaffold_300-1491911889:69391..69674TCONS_00057890-exon-scaffold_300-1491911889:69391..69674Clytia hemisphaericaexon
TCONS_00057890-exon-scaffold_300-1510915933:69391..69674TCONS_00057890-exon-scaffold_300-1510915933:69391..69674Clytia hemisphaericaexon
TCONS_00057890-exon-scaffold_300-1575043694:69391..69674TCONS_00057890-exon-scaffold_300-1575043694:69391..69674Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_300supercontigscaffold_300:69391..69674 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.469583	0	0	0	12.6652	4.00328	1.81117	1.1304	1.18713	0.980298	0	0	0	0	0.533289	1.1446	0	0	0	1.04471	0.454019	1.32873	0	0	1.51251	0.44996	1.93167	1.37436	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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