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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057892 ID=TCONS_00057892|Name=TCONS_00057892|organism=Clytia hemisphaerica|type=transcript|length=2395bp
AAAAGCAGGAAACTGGACATTCTACTGTATTTGCAGGATTGAGTTCCTTT
ATATGCATGAAAAACTCTTCTTTAAAAGACTGATGCACTCTCTATTATTA
ATAATGAACGATATGctcattttattttcagaaaaaatgaatattACAAT
TAAGTACTCAAAAAATCTGGAACCTTTGACAATTTCAAATGATGATGTGA
AATCATTGGATGAATTGAAGCTTAGAATTGAAGAAACAATTCAGCTGCCA
GGACATCTCCAACACTTTGCTTTAGAAGAGACATCTATATTTGTGACATC
CAACAATTTTCAtgaacttttcttcaaaaaagagaagattgttttgaaat
tattttgtgcTGGCACAGAAGactcaaaaatcatcaaaatatgtCAAGAT
CTTGAGATGAATGATGAAATTATTGAGATGTGGATGGTCTTAGGTTCTTT
TCACTTCAATTTTCCCATCAAACTGGATTCTAAAATAACAGATGCAAGAA
GGAGCTTAGATGAAAATGGTTTCTCAAGTAAAGCAAGTTTGTTTTATCCG
TCTAATTATCTTGATCTTGCGCTGCCCATACTTCCTCTTTCAGATGATCA
ATTCCTAGTGGATTTGTTCTTTCAAAGAGATGAATTCCAAAGTGATTATT
ATTTGATTCAATTGGAAAAATTTATGGGAGGCAATTGCATGGGAGAAATA
CGAAATATTGTTATACGCTCATACATTAATGAGGATAGAGTCTTTGAGTT
GCACCTAAATGAAAAGGTTATCATTGATACTGTTGCTGTCAAGGAACGTA
TCATGGAAGAGATTGGTATACCAGTGCACCTACAAGCCTATTGTTTTGAA
GCAGATAGCAACTTTTTGAAAGATATTTGCTTGGTCAGTGAATTTTATAT
TCATCGTGAATGGGAAGGTTATGATCCTGCAAATATAGATCTTCGTTTGT
TTGTGCTACCCACAAAGGATGAAAAGATAATCCAAATTTGCGAAGATCAT
AACATTTTCATGTTCCATCCAGTTGCTTTGTTtaataacaaaaataagat
TGTAGAGTACAATTTTGACAAACATTCTATTACCTTTGCAGATGCTTTGA
GTATCATGATCAAAGAGGCTGAGTTGCCTGAGTCTGCTGATTTCAGATGT
TACGTTAGAGGTAAGGAGGTTAAATGTAATTCGTTTATACTAGATCATTA
CATATATTGGATTGATAGGGGTGATTATGAAGATGGGGAGATGATTGTTG
AAAAACAACTTCAAGTACTTGTCAGTGTTGCAGAGTCACCAAATGAAGAA
TACAACAAAGTATGCATAGGGAAAGGATTCGGTGTAATGAAGACTGTCAC
AGTTTTGCTTCATGATCATTCCACTGTTGTTCAAAAGTATTCTCTTAATG
ATGTGCCTAGCTTAGGCAAATTATCTGAGAGGCTTCACGAAATTTTTCCT
GGATTTTCCTTTGAATTGTTTCATGACAACAAAGTCTTACGATGCCAGAA
ACTGTTTTATTGGTTGTATAAGCTTCCTGATTTATTCTTTGACAAAGAAG
CAAACTCTACAATTGAGAATGTTAACATTATCTTGACATTCAAAACCAAT
TGTatttttttggatgaaaaagatCTCAAAGTTATAGATGAATACTGTAA
ATCACACCAAGTTGCTTGCtgcaaaaagatcaaaatcaatttccaaAATG
GAAGAAGTAAAGTCATTTGTGATGATGATAAATATAATAGCATGAATTTG
TTCAGAGATGTGTATCCTAGAGCACGCTTGTCTTGGGAGACTGACAAGTT
ACTATTTAATGGAAGAGAAGTTCCCCCAGATAAATTTCTTTTAGAACTCT
TTGTAGAACAAGCAGACCCAACTACTGATTTTATTACCTTCACTCATGAG
AAGATTAATCCAAGGCCCGAAAGTCAACAAATTCAAGAAGGATCCCTGGA
TAGCCTGTGTCTGCTATTATAATTATTCATCGGTGCATCCGAGATACCAC
CCTTGCCAGGATTTTTGAGCAAATCCTATGTTTGATTTATTCtatataat
tttatttattattccATTTATGATTATACACTATCCaatattaaaaatta
aattaaacttTAGATTCATTAtaatatgttttattttttttatataactt
TTACTTTCTTTTGTGTGTTTGAAAGTGAATGAGTTTAAATCAAGATTGTG
AGAAAACTAGAAATATTATAAATCCAAACTTTTCACCGTAAGAAAAAAGA
AAGGTTCACTttaattttgagctattatattctcttttgaaaaagcttga
ttttcgagaaaaaacaGGGGATCAAATTCAAGCATACAAAACACTGATAA
AAGCTTTATTAGATACTATTTTTAACACCTAAAGATTCCGAGggc Run BLAST on NCBI transcript from alignment at scaffold_301:14278..16672+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057892 ID=TCONS_00057892|Name=TCONS_00057892|organism=Clytia hemisphaerica|type=transcript|length=2395bp|location=Sequence derived from alignment at scaffold_301:14278..16672+ (Clytia hemisphaerica)
AAAAGCAGGAAACTGGACATTCTACTGTATTTGCAGGATTGAGTTCCTTT
ATATGCATGAAAAACTCTTCTTTAAAAGACTGATGCACTCTCTATTATTA
ATAATGAACGATATGctcattttattttcagaaaaaatgaatattACAAT
TAAGTACTCAAAAAATCTGGAACCTTTGACAATTTCAAATGATGATGTGA
AATCATTGGATGAATTGAAGCTTAGAATTGAAGAAACAATTCAGCTGCCA
GGACATCTCCAACACTTTGCTTTAGAAGAGACATCTATATTTGTGACATC
CAACAATTTTCAtgaacttttcttcaaaaaagagaagattgttttgaaat
tattttgtgcTGGCACAGAAGactcaaaaatcatcaaaatatgtCAAGAT
CTTGAGATGAATGATGAAATTATTGAGATGTGGATGGTCTTAGGTTCTTT
TCACTTCAATTTTCCCATCAAACTGGATTCTAAAATAACAGATGCAAGAA
GGAGCTTAGATGAAAATGGTTTCTCAAGTAAAGCAAGTTTGTTTTATCCG
TCTAATTATCTTGATCTTGCGCTGCCCATACTTCCTCTTTCAGATGATCA
ATTCCTAGTGGATTTGTTCTTTCAAAGAGATGAATTCCAAAGTGATTATT
ATTTGATTCAATTGGAAAAATTTATGGGAGGCAATTGCATGGGAGAAATA
CGAAATATTGTTATACGCTCATACATTAATGAGGATAGAGTCTTTGAGTT
GCACCTAAATGAAAAGGTTATCATTGATACTGTTGCTGTCAAGGAACGTA
TCATGGAAGAGATTGGTATACCAGTGCACCTACAAGCCTATTGTTTTGAA
GCAGATAGCAACTTTTTGAAAGATATTTGCTTGGTCAGTGAATTTTATAT
TCATCGTGAATGGGAAGGTTATGATCCTGCAAATATAGATCTTCGTTTGT
TTGTGCTACCCACAAAGGATGAAAAGATAATCCAAATTTGCGAAGATCAT
AACATTTTCATGTTCCATCCAGTTGCTTTGTTtaataacaaaaataagat
TGTAGAGTACAATTTTGACAAACATTCTATTACCTTTGCAGATGCTTTGA
GTATCATGATCAAAGAGGCTGAGTTGCCTGAGTCTGCTGATTTCAGATGT
TACGTTAGAGGTAAGGAGGTTAAATGTAATTCGTTTATACTAGATCATTA
CATATATTGGATTGATAGGGGTGATTATGAAGATGGGGAGATGATTGTTG
AAAAACAACTTCAAGTACTTGTCAGTGTTGCAGAGTCACCAAATGAAGAA
TACAACAAAGTATGCATAGGGAAAGGATTCGGTGTAATGAAGACTGTCAC
AGTTTTGCTTCATGATCATTCCACTGTTGTTCAAAAGTATTCTCTTAATG
ATGTGCCTAGCTTAGGCAAATTATCTGAGAGGCTTCACGAAATTTTTCCT
GGATTTTCCTTTGAATTGTTTCATGACAACAAAGTCTTACGATGCCAGAA
ACTGTTTTATTGGTTGTATAAGCTTCCTGATTTATTCTTTGACAAAGAAG
CAAACTCTACAATTGAGAATGTTAACATTATCTTGACATTCAAAACCAAT
TGTatttttttggatgaaaaagatCTCAAAGTTATAGATGAATACTGTAA
ATCACACCAAGTTGCTTGCtgcaaaaagatcaaaatcaatttccaaAATG
GAAGAAGTAAAGTCATTTGTGATGATGATAAATATAATAGCATGAATTTG
TTCAGAGATGTGTATCCTAGAGCACGCTTGTCTTGGGAGACTGACAAGTT
ACTATTTAATGGAAGAGAAGTTCCCCCAGATAAATTTCTTTTAGAACTCT
TTGTAGAACAAGCAGACCCAACTACTGATTTTATTACCTTCACTCATGAG
AAGATTAATCCAAGGCCCGAAAGTCAACAAATTCAAGAAGGATCCCTGGA
TAGCCTGTGTCTGCTATTATAATTATTCATCGGTGCATCCGAGATACCAC
CCTTGCCAGGATTTTTGAGCAAATCCTATGTTTGATTTATTCtatataat
tttatttattattccATTTATGATTATACACTATCCaatattaaaaatta
aattaaacttTAGATTCATTAtaatatgttttattttttttatataactt
TTACTTTCTTTTGTGTGTTTGAAAGTGAATGAGTTTAAATCAAGATTGTG
AGAAAACTAGAAATATTATAAATCCAAACTTTTCACCGTAAGAAAAAAGA
AAGGTTCACTttaattttgagctattatattctcttttgaaaaagcttga
ttttcgagaaaaaacaGGGGATCAAATTCAAGCATACAAAACACTGATAA
AAGCTTTATTAGATACTATTTTTAACACCTAAAGATTCCGAGggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057892-exon-scaffold_301-1491911889:14278..16672 | TCONS_00057892-exon-scaffold_301-1491911889:14278..16672 | Clytia hemisphaerica | exon |
| TCONS_00057892-exon-scaffold_301-1510915933:14278..16672 | TCONS_00057892-exon-scaffold_301-1510915933:14278..16672 | Clytia hemisphaerica | exon |
| TCONS_00057892-exon-scaffold_301-1575043694:14278..16672 | TCONS_00057892-exon-scaffold_301-1575043694:14278..16672 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_301 | supercontig | scaffold_301:14278..16672 + |
Blast
The following BLAST results are available for this feature:
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