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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057896 ID=TCONS_00057896|Name=TCONS_00057896|organism=Clytia hemisphaerica|type=transcript|length=1710bp
GAACCGTATAAAAGCCGGCGttttaaaaccaaaaacaaaattttaaatgt
taCGTTATAAAATTTCTTGGTTGTATCTTTGGACAGTGTAATTGATTTGA
TTGAATTTAATATTTGGTAGAAGAAAAGTTTGCGACCAATGTCGATGGCG
ACCGAatattttcTTCTTCCTCAAGATGAAGTGCAACAACAGTCAAAACT
GGGTGATGACTCCGGCAATGAAGAACCTTCTGGGCATAGAGACATCCATT
TCAATAGTAGTTGCAATACTTAACATTATTGAGATAGTTCTCATCAAGCG
TAAAAAGGAAAAGACAAACTTTGATAGATTGCTTATGAGTTTATCAATGG
CCGACTTATTATATGGAGCTTTGAACGGCCTTTTGAACGCACTCCGCATA
ATACAGTCAAACTCAGACATACTCTTCAATGTACGTCTTTTCTTCATGCT
AGCCTCAACTCTTCATCTTTTGCTCATCGGCACAGATAGATTAGTGGCAG
TCGCTAAACCGTTGAAACATAGAGTCATTGCGACACCAAAGAGAATATAT
TGGTCCATATTCCTTGTCTGGGTGTTATCAATTAGCGGATTggccatttt
tcaatttttttatcaatcaagTCAAAATTCCCCAAAAACAAACTCAACAG
ATCCCTTATTACATCCACAACAAAAACTTGATCATGGAGTTGTGAGATTT
CGCTCATCAAAAGTTGAGAGCCAAATAAAGTCTTCCATTCCATTCAGCAA
CAATACATCGACACTGTCCCGCTTACCAAACAAAACATTACAATCAAATT
CTACCAACCTCCGGCGGTGTAACATCAAATCCATGGCGGCACGGATTCAA
AAAAGAAGCACCCATATgtacaagaaagaaaagattNCACTGTCCCGCTT
ACCAAACAAAACTTTACAATCAAATTCTACCGCCCTCTGGTGTAACAACA
ATTCAATGGCGATGGAGATTCAAATAAGAAGTGTCGATATGTAcaacaaa
gaaaagattttaGCTTATTGTATCATCGGGGCAGCCGTTTCTCTGACAAT
ACTCTATTCCTTGGTCATATACTATGTGCAGCGATCTCAAGTGGTGGAAA
TTCGACGAAAAGTCAGCCTGATAAGTATCCTTGTACCAGCTTGTTTTATA
CTTTTCACCATACCCTACGCACTGTACAGCTTACTAACTCAAGCTAAAGT
GGCTCTTTTGTTGAATGTTGTCATGCTTTTAAACAGTGGTGTCAACTCAG
TTCtctatttcttcaaaaacaagtTTCAAACTTGTACAGGAGTGCGATCT
GTGTCACACGTACACGTAAAACGACGGACCCTATCAAAAACAGCAAGTAG
TAGCCTGACTACAATTACAAAGGAACAATTGCAAGACTCTCGAGTGTAAA
TTGCTTTCATGATCCAAGTTATTTAATCATTGGAATTATAcatagtaaaa
atatttcttaatccTCTATTTGCCCCAAAGGGTTAGAATCgactacaaaa
aaaaaatttaaaaaccgaTTTAAGACctaatttttaaagatttcctttta
aaattaagtcatatcgtttgcttactcatcaattttaatttacaagcttt
ttcgcattggattgacacggatatggagcaatattggtcagaaagaggaa
aagaagaacattttttgcttatatcagcataatataacaataagaagaca
ctgtcccgat Run BLAST on NCBI protein sequence of TCONS_00057896-protein >TCONS_00057896-protein ID=TCONS_00057896-protein|Name=TCONS_00057896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
MKCNNSQNWVMTPAMKNLLGIETSISIVVAILNIIEIVLIKRKKEKTNFD
RLLMSLSMADLLYGALNGLLNALRIIQSNSDILFNVRLFFMLASTLHLLL
IGTDRLVAVAKPLKHRVIATPKRIYWSIFLVWVLSISGLAIFQFFYQSSQ
NSPKTNSTDPLLHPQQKLDHGVVRFRSSKVESQIKSSIPFSNNTSTLSRL
PNKTLQSNSTNLRRCNIKSMAARIQKRSTHMYKKEKIXLSRLPNKTLQSN
STALWCNNNSMAMEIQIRSVDMYNKEKILAYCIIGAAVSLTILYSLVIYY
VQRSQVVEIRRKVSLISILVPACFILFTIPYALYSLLTQAKVALLLNVVM
LLNSGVNSVLYFFKNKFQTCTGVRSVSHVHVKRRTLSKTASSSLTTITKE
QLQDSRV Run BLAST on NCBI transcript from alignment at scaffold_301:74685..78680+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057896 ID=TCONS_00057896|Name=TCONS_00057896|organism=Clytia hemisphaerica|type=transcript|length=3996bp|location=Sequence derived from alignment at scaffold_301:74685..78680+ (Clytia hemisphaerica)
GAACCGTATAAAAGCCGGCGttttaaaaccaaaaacaaaattttaaatgt
taCGTTATAAAATTTCTTGGTTGTATCTTTGGACAGTGTAATTGATTTGA
TTGAATTTAATATTTGGTAGAAGAAAAGTTTGCGACCAATGTCGATGGCG
ACCGAatatttgtgagtatttttgtgttgATTCCTAAAGAATCGGGTGAA
TTAGTATGGCACGCCGTACCTTGACTTACGCAATAAAATattcgattatg
cgataatTTATTCGATAAACTCTTTCGACGAGATAAATTATTCGACAAAA
AATTCGATACGATGAATTATTCAATAAACATTTCGATTATGCGATTAAAT
ATTCGATAAAAATTCGATGCGGTAAAACATGcaataaaaagtttgattaT
GCGATTAAATAttcgataaaaatttaaatgcgACATatcattcgataaaa
aattcgatgcaataaattattcgataaaaaaattCGATCCGATAAAATAT
TCGTTAAAAAATTCGATACAATAAAACATTCGATGcgatgaaatattttc
aataaaaaattcgaTACGATAAACGATGCGATGAATCAttcgataaatta
ttcgatgaATCATCCGATCGGCCCTTCGCGATATTTAAacttttggtaga
aacggcgctccTAACAGGAGGAAAGGCGGAATCATTTCCGGGCAGGCAGT
TTCATTAGGGCAGATCAATGTAAAATTACAGGGTCCGGAAAAAAGTAGAA
CATATTTCTTGTATCttactgaaaaagaaattgaccaaaatgCGCCAAAC
TCTTTTATGTCTTGGGATTATCATAGAAGACCAAAACGATAACTGATATT
CACTCTCTAGCCACGTGCTTTAATAAGATTAACCTCCACGagattaaaac
tcaaaattctcCTTATGTGGCATAAAATGGCCATTTTTAGCTGCTCTCTG
GCTCATTCGCGAATTTAAATCCAAGCgaaatctttcaaaactttgactta
aatctagaaaatttcacgattttttaggtttgcgaaatttaatctcgcag
aatcaaatcaaatgaaaaccTTTTTAAGCGAAGAGAAAGCGCACTGAATT
TCTGCCAAAAACGTCAACCTCTCACATTTCCCGCACACGTAGGGTTGCTT
GTTTCACTTGTGCACCGTTTCCACCGAAAGTATAAATACAGGTAGGGCGG
ATCTGATGATTCATCGAATCATTTATCGAATCATTTATCGCAGCGAACGA
TTTATCTCATTGAACGATTTATCGCATCAAACAActtatcgaatgattta
tcgcatcgaattttttatcgcataatttatcgcatcgaaagAATTTATCG
AATAAATTATCTCATAATCGAATATTTAATTGTataatttatcgcatcga
aaAAGATTATCGAATAAATCATCGCAAAATCGAATACTTTATCGCATAAG
ACAGCTACAACGTGTCATAATTAAGAGTCTGCAAAGACTTAAATGTTCTT
CACTTGTTCTTAATACTTTGGTCATTGAAGCaatatgttcttacatagtt
tgttcttataaaaaattgtaaacTCGAAGAAAGGGAAGGTCGCCACTAAT
CACTTATCCTCAGTCGCCCTATTTGTCAGATGTCAACAAAAATTTGTAGA
GGATAGCAAATCTTTATGACACTGTATTTAATTATCTTTCAGTATTATGA
ATAGATAGTCAGAGTCATTAAAACCAGACGTCTCCTCCACAAATTTGgcg
cccctcttgtctacgctactgataTGCTGACATGTTTTCTGAGAATTATC
AAACTAAGTGTTTACTTTGGgttgaaaaatgtataattaCGAAACACATC
AACAAATCAAATCTATCTAAatccttcattttttttcaatttgaaaaaag
ttctaaTTTTTAATAGCGTTTTTCGGAAAATAGAGTGAAATATCTCAGTT
TGAAATTTGTTGACCGACAACGGTAAATAAAGGAGCTCCCTTATTGGGCT
GTTCCAAAagatttccatacagggggtggacaaaccttttcaggtcaaaa
caaatttcttggaaatgtgtggatactcccaggaaatttgtaaaaaatga
ccTCCTGGAACTTCTcgaattaccccctggaaaagttcgtccaTTTTGCA
GCATTTCGCAAACGAATGCTTCACCTTACGGTCGATCtattcaatagacc
ttatcggagtttttgatttttctaaaaaagcgatgcattgtgggattgtt
tcgagcttatgacaatagaattccctcgaagaattcctaagagatttcta
ttgtaatacactcgaaacaatcccacaatgcatcgcttttttagaaaaat
caaatacTCCGAAGAGTTCTATAGTTACTTTCTCCCGTAACCCCTCAGAG
ACAACTCTCaggacaatttaaaaatatttccctaaaattattttcagtcT
TCTTCCTCAAGATGAAGTGCAACAACAGTCAAAACTGGGTGATGACTCCG
GCAATGAAGAACCTTCTGGGCATAGAGACATCCATTTCAATAGTAGTTGC
AATACTTAACATTATTGAGATAGTTCTCATCAAGCGTAAAAAGGAAAAGA
CAAACTTTGATAGATTGCTTATGAGTTTATCAATGGCCGACTTATTATAT
GGAGCTTTGAACGGCCTTTTGAACGCACTCCGCATAATACAGTCAAACTC
AGACATACTCTTCAATGTACGTCTTTTCTTCATGCTAGCCTCAACTCTTC
ATCTTTTGCTCATCGGCACAGATAGATTAGTGGCAGTCGCTAAACCGTTG
AAACATAGAGTCATTGCGACACCAAAGAGAATATATTGGTCCATATTCCT
TGTCTGGGTGTTATCAATTAGCGGATTggccatttttcaatttttttatc
aatcaagTCAAAATTCCCCAAAAACAAACTCAACAGATCCCTTATTACAT
CCACAACAAAAACTTGATCATGGAGTTGTGAGATTTCGCTCATCAAAAGT
TGAGAGCCAAATAAAGTCTTCCATTCCATTCAGCAACAATACATCGACAC
TGTCCCGCTTACCAAACAAAACATTACAATCAAATTCTACCAACCTCCGG
CGGTGTAACATCAAATCCATGGCGGCACGGATTCAAAAAAGAAGCACCCA
TATgtacaagaaagaaaagattNCACTGTCCCGCTTACCAAACAAAACTT
TACAATCAAATTCTACCGCCCTCTGGTGTAACAACAATTCAATGGCGATG
GAGATTCAAATAAGAAGTGTCGATATGTAcaacaaagaaaagattttaGC
TTATTGTATCATCGGGGCAGCCGTTTCTCTGACAATACTCTATTCCTTGG
TCATATACTATGTGCAGCGATCTCAAGTGGTGGAAATTCGACGAAAAGTC
AGCCTGATAAGTATCCTTGTACCAGCTTGTTTTATACTTTTCACCATACC
CTACGCACTGTACAGCTTACTAACTCAAGCTAAAGTGGCTCTTTTGTTGA
ATGTTGTCATGCTTTTAAACAGTGGTGTCAACTCAGTTCtctatttcttc
aaaaacaagtTTCAAACTTGTACAGGAGTGCGATCTGTGTCACACGTACA
CGTAAAACGACGGACCCTATCAAAAACAGCAAGTAGTAGCCTGACTACAA
TTACAAAGGAACAATTGCAAGACTCTCGAGTGTAAATTGCTTTCATGATC
CAAGTTATTTAATCATTGGAATTATAcatagtaaaaatatttcttaatcc
TCTATTTGCCCCAAAGGGTTAGAATCgactacaaaaaaaaaatttaaaaa
ccgaTTTAAGACctaatttttaaagatttccttttaaaattaagtcatat
cgtttgcttactcatcaattttaatttacaagctttttcgcattggattg
acacggatatggagcaatattggtcagaaagaggaaaagaagaacatttt
ttgcttatatcagcataatataacaataagaagacactgtcccgat Coding sequence (CDS) from alignment at scaffold_301:74685..78680+ >TCONS_00057896 ID=TCONS_00057896|Name=TCONS_00057896|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_301:74685..78680+ (Clytia hemisphaerica)
ATGAAGTGCAACAACAGTCAAAACTGGGTGATGACTCCGGCAATGAAGAA
CCTTCTGGGCATAGAGACATCCATTTCAATAGTAGTTGCAATACTTAACA
TTATTGAGATAGTTCTCATCAAGCGTAAAAAGGAAAAGACAAACTTTGAT
AGATTGCTTATGAGTTTATCAATGGCCGACTTATTATATGGAGCTTTGAA
CGGCCTTTTGAACGCACTCCGCATAATACAGTCAAACTCAGACATACTCT
TCAATGTACGTCTTTTCTTCATGCTAGCCTCAACTCTTCATCTTTTGCTC
ATCGGCACAGATAGATTAGTGGCAGTCGCTAAACCGTTGAAACATAGAGT
CATTGCGACACCAAAGAGAATATATTGGTCCATATTCCTTGTCTGGGTGT
TATCAATTAGCGGATTggccatttttcaatttttttatcaatcaagTCAA
AATTCCCCAAAAACAAACTCAACAGATCCCTTATTACATCCACAACAAAA
ACTTGATCATGGAGTTGTGAGATTTCGCTCATCAAAAGTTGAGAGCCAAA
TAAAGTCTTCCATTCCATTCAGCAACAATACATCGACACTGTCCCGCTTA
CCAAACAAAACATTACAATCAAATTCTACCAACCTCCGGCGGTGTAACAT
CAAATCCATGGCGGCACGGATTCAAAAAAGAAGCACCCATATgtacaaga
aagaaaagattNCACTGTCCCGCTTACCAAACAAAACTTTACAATCAAAT
TCTACCGCCCTCTGGTGTAACAACAATTCAATGGCGATGGAGATTCAAAT
AAGAAGTGTCGATATGTAcaacaaagaaaagattttaGCTTATTGTATCA
TCGGGGCAGCCGTTTCTCTGACAATACTCTATTCCTTGGTCATATACTAT
GTGCAGCGATCTCAAGTGGTGGAAATTCGACGAAAAGTCAGCCTGATAAG
TATCCTTGTACCAGCTTGTTTTATACTTTTCACCATACCCTACGCACTGT
ACAGCTTACTAACTCAAGCTAAAGTGGCTCTTTTGTTGAATGTTGTCATG
CTTTTAAACAGTGGTGTCAACTCAGTTCtctatttcttcaaaaacaagtT
TCAAACTTGTACAGGAGTGCGATCTGTGTCACACGTACACGTAAAACGAC
GGACCCTATCAAAAACAGCAAGTAGTAGCCTGACTACAATTACAAAGGAA
CAATTGCAAGACTCTCGAGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057896-exon-scaffold_301-1491911889:74685..74845 | TCONS_00057896-exon-scaffold_301-1491911889:74685..74845 | Clytia hemisphaerica | exon |
| TCONS_00057896-exon-scaffold_301-1510915933:74685..74845 | TCONS_00057896-exon-scaffold_301-1510915933:74685..74845 | Clytia hemisphaerica | exon |
| TCONS_00057896-exon-scaffold_301-1575043694:74685..74845 | TCONS_00057896-exon-scaffold_301-1575043694:74685..74845 | Clytia hemisphaerica | exon |
| TCONS_00057896-exon-scaffold_301-1491911889:77132..78680 | TCONS_00057896-exon-scaffold_301-1491911889:77132..78680 | Clytia hemisphaerica | exon |
| TCONS_00057896-exon-scaffold_301-1510915933:77132..78680 | TCONS_00057896-exon-scaffold_301-1510915933:77132..78680 | Clytia hemisphaerica | exon |
| TCONS_00057896-exon-scaffold_301-1575043694:77132..78680 | TCONS_00057896-exon-scaffold_301-1575043694:77132..78680 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_301 | supercontig | scaffold_301:74685..78680 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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