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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057906 ID=TCONS_00057906|Name=TCONS_00057906|organism=Clytia hemisphaerica|type=transcript|length=1191bp
CCCTCAGTGAGTTGTCATGATTCTCCATTTTGTAAAAGTTCAAATTCAAG
TTTGTAAAAGTTCAATTTCTTACGCCCACTTCGTACGAAGTCAAAACGCG
AATCGCGAAATAGTATAAACGAATTACATTCAACCTCGTTACCTCTAATG
TAACATCTGAAATCAGCAGACTCAGGTAACTTAGCCTCTTTGATCATGAT
ACTTAAAGCATCTGCAAAGGTACTAGAATGTTTGTCAAAATTGTACTCTA
CAatcttatttttgttattaaatAAAGCAACTGGTTGGAACATGAAAATG
TTATAATCTTCGCAAATTTGGATGATCTTTTCATCCTTTGTGGGTAGCAC
AAACAAACGAAGATCTATATTTGCAGGATCATAACCTTCCCATTCGCACT
GAGTATTAAATTCACTGACCAAGCAAGTATCTTTCAGAAAGTTGCTATCT
GCTTCAAAACAATAGGCTTGTAGGTGCACTGGTATACCAATCTCTTCCAT
GATACGTTCCTTGACAGCAACAGTATCAATGATAACCTTTTCATTTAGGT
GCAACTCAAAGACTCTATCCTCATTAATGTATGAGCGTATAACAATATTT
CGTATACAATCTCCCATGCAATTGCCTCCCATAAATTTTTCCAATTTAAT
CAAATGATAATCAGTTTGGAATTCATCTCTTTGAAAGAACAAATCCACTA
GGAATTGATCATCTGAAAGAGGAAGTATGGGCAGCGCAAGATCAAGATAA
TTAGACGGATAAAACAAACTTGCTTTACTTGAGAAACCATTTTCATCTAA
GCTCCTTCTTGCATCTGTTATTTTAGAATCCAGTTTGATGGGAAAATTGA
AGTGAAAAGAACCTAAGACCATCCACATCTCAATAATTTCATCATTCATC
TCAAGATCTTGacatattttgatgatttttgagtCTTCTGTGCCAgcaca
aaataatttcaaaacaatcttctcttttttgaagaaaagttcaTGAAAAT
TGTTGGATGTCACAAATATAGATGTCTCTTCTAAAGCAAAGTGTTGGAGA
TGTCCTGGCAGCTGAATTGTTTCTTCAATTCTAAGCTTCAATTCATCCAA
TGATTTCACATCATCATTTGAAATTGTCAAAGGTTCCAGATTTTTTGAGT
ACTTAATTGTaatattcattttttctgaaaataaaatgagC Run BLAST on NCBI protein sequence of TCONS_00057906-protein >TCONS_00057906-protein ID=TCONS_00057906-protein|Name=TCONS_00057906-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
LILFSEKMNITIKYSKNLEPLTISNDDVKSLDELKLRIEETIQLPGHLQH
FALEETSIFVTSNNFHELFFKKEKIVLKLFCAGTEDSKIIKICQDLEMND
EIIEMWMVLGSFHFNFPIKLDSKITDARRSLDENGFSSKASLFYPSNYLD
LALPILPLSDDQFLVDLFFQRDEFQTDYHLIKLEKFMGGNCMGDCIRNIV
IRSYINEDRVFELHLNEKVIIDTVAVKERIMEEIGIPVHLQAYCFEADSN
FLKDTCLVSEFNTQCEWEGYDPANIDLRLFVLPTKDEKIIQICEDYNIFM
FQPVALFNNKNKIVEYNFDKHSSTFADALSIMIKEAKLPESADFRCYIRG
NEVECNSFILFRDSRFDFVRSGRKKLNFYKLEFELLQNGES Run BLAST on NCBI transcript from alignment at scaffold_301:21896..23086 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057906 ID=TCONS_00057906|Name=TCONS_00057906|organism=Clytia hemisphaerica|type=transcript|length=1191bp|location=Sequence derived from alignment at scaffold_301:21896..23086 (Clytia hemisphaerica)
GctcattttattttcagaaaaaatgaatattACAATTAAGTACTCAAAAA
ATCTGGAACCTTTGACAATTTCAAATGATGATGTGAAATCATTGGATGAA
TTGAAGCTTAGAATTGAAGAAACAATTCAGCTGCCAGGACATCTCCAACA
CTTTGCTTTAGAAGAGACATCTATATTTGTGACATCCAACAATTTTCAtg
aacttttcttcaaaaaagagaagattgttttgaaattattttgtgcTGGC
ACAGAAGactcaaaaatcatcaaaatatgtCAAGATCTTGAGATGAATGA
TGAAATTATTGAGATGTGGATGGTCTTAGGTTCTTTTCACTTCAATTTTC
CCATCAAACTGGATTCTAAAATAACAGATGCAAGAAGGAGCTTAGATGAA
AATGGTTTCTCAAGTAAAGCAAGTTTGTTTTATCCGTCTAATTATCTTGA
TCTTGCGCTGCCCATACTTCCTCTTTCAGATGATCAATTCCTAGTGGATT
TGTTCTTTCAAAGAGATGAATTCCAAACTGATTATCATTTGATTAAATTG
GAAAAATTTATGGGAGGCAATTGCATGGGAGATTGTATACGAAATATTGT
TATACGCTCATACATTAATGAGGATAGAGTCTTTGAGTTGCACCTAAATG
AAAAGGTTATCATTGATACTGTTGCTGTCAAGGAACGTATCATGGAAGAG
ATTGGTATACCAGTGCACCTACAAGCCTATTGTTTTGAAGCAGATAGCAA
CTTTCTGAAAGATACTTGCTTGGTCAGTGAATTTAATACTCAGTGCGAAT
GGGAAGGTTATGATCCTGCAAATATAGATCTTCGTTTGTTTGTGCTACCC
ACAAAGGATGAAAAGATCATCCAAATTTGCGAAGATTATAACATTTTCAT
GTTCCAACCAGTTGCTTTatttaataacaaaaataagatTGTAGAGTACA
ATTTTGACAAACATTCTAGTACCTTTGCAGATGCTTTAAGTATCATGATC
AAAGAGGCTAAGTTACCTGAGTCTGCTGATTTCAGATGTTACATTAGAGG
TAACGAGGTTGAATGTAATTCGTTTATACTATTTCGCGATTCGCGTTTTG
ACTTCGTACGAAGTGGGCGTAAGAAATTGAACTTTTACAAACTTGAATTT
GAACTTTTACAAAATGGAGAATCATGACAACTCACTGAGGG Coding sequence (CDS) from alignment at scaffold_301:21896..23086 >TCONS_00057906 ID=TCONS_00057906|Name=TCONS_00057906|organism=Clytia hemisphaerica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_301:21896..23086 (Clytia hemisphaerica)
ctcattttattttcagaaaaaatgaatattACAATTAAGTACTCAAAAAA
TCTGGAACCTTTGACAATTTCAAATGATGATGTGAAATCATTGGATGAAT
TGAAGCTTAGAATTGAAGAAACAATTCAGCTGCCAGGACATCTCCAACAC
TTTGCTTTAGAAGAGACATCTATATTTGTGACATCCAACAATTTTCAtga
acttttcttcaaaaaagagaagattgttttgaaattattttgtgcTGGCA
CAGAAGactcaaaaatcatcaaaatatgtCAAGATCTTGAGATGAATGAT
GAAATTATTGAGATGTGGATGGTCTTAGGTTCTTTTCACTTCAATTTTCC
CATCAAACTGGATTCTAAAATAACAGATGCAAGAAGGAGCTTAGATGAAA
ATGGTTTCTCAAGTAAAGCAAGTTTGTTTTATCCGTCTAATTATCTTGAT
CTTGCGCTGCCCATACTTCCTCTTTCAGATGATCAATTCCTAGTGGATTT
GTTCTTTCAAAGAGATGAATTCCAAACTGATTATCATTTGATTAAATTGG
AAAAATTTATGGGAGGCAATTGCATGGGAGATTGTATACGAAATATTGTT
ATACGCTCATACATTAATGAGGATAGAGTCTTTGAGTTGCACCTAAATGA
AAAGGTTATCATTGATACTGTTGCTGTCAAGGAACGTATCATGGAAGAGA
TTGGTATACCAGTGCACCTACAAGCCTATTGTTTTGAAGCAGATAGCAAC
TTTCTGAAAGATACTTGCTTGGTCAGTGAATTTAATACTCAGTGCGAATG
GGAAGGTTATGATCCTGCAAATATAGATCTTCGTTTGTTTGTGCTACCCA
CAAAGGATGAAAAGATCATCCAAATTTGCGAAGATTATAACATTTTCATG
TTCCAACCAGTTGCTTTatttaataacaaaaataagatTGTAGAGTACAA
TTTTGACAAACATTCTAGTACCTTTGCAGATGCTTTAAGTATCATGATCA
AAGAGGCTAAGTTACCTGAGTCTGCTGATTTCAGATGTTACATTAGAGGT
AACGAGGTTGAATGTAATTCGTTTATACTATTTCGCGATTCGCGTTTTGA
CTTCGTACGAAGTGGGCGTAAGAAATTGAACTTTTACAAACTTGAATTTG
AACTTTTACAAAATGGAGAATCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057906-exon-scaffold_301-1491911889:21896..23086 | TCONS_00057906-exon-scaffold_301-1491911889:21896..23086 | Clytia hemisphaerica | exon |
| TCONS_00057906-exon-scaffold_301-1510915933:21896..23086 | TCONS_00057906-exon-scaffold_301-1510915933:21896..23086 | Clytia hemisphaerica | exon |
| TCONS_00057906-exon-scaffold_301-1575043694:21896..23086 | TCONS_00057906-exon-scaffold_301-1575043694:21896..23086 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_301 | supercontig | scaffold_301:21896..23086 . |
Blast
The following BLAST results are available for this feature:
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