TCONS_00057910 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057910
Unique NameTCONS_00057910
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057910 ID=TCONS_00057910|Name=TCONS_00057910|organism=Clytia hemisphaerica|type=transcript|length=853bp
TTTCATATGATTTCCGGTTAACCCCTTCAATAATGACAATGTGTTTGATT
CGTCATAAACTATTTCAAACTATACAACAGTTCTACATTAAATCAGTTCA
TTAAACCCTCGACTAAAACTTCAAAGGGGCTCGAAAAAATCCAAAGTCTT
CATTGTTTTCATCAAACTCCTCCTCATCAACATACTCATTCAGGTCGACA
ACATCTTCGTCAGGGAAGTTAtcgcaatttttctttttgcaagCGTCTGT
GCAGAAAAGACCGTTGTCAATGCAAGGGCACTTTCCAGCTACACACTGCT
TCGTGCAGCTACAAAACATCAGTTCCAAGATTTCTTCTGGAGCTGGAAGA
ACAGTATTCCATCTTATCTCAAGATTACCATCGTCATGTTCTTTCCAACC
AAAGTTAGCAGGATGTGGTAAATTTTGACGATTCTTCAAACACGATCTCC
ATACGTAGATTTGGTAAGCTGTTCTCATTGTATGAAGCCTCAAGCTATCG
GAGCAGGGGGGGGTAGAGATTTCGCCTCAGCTTGACCTTGTTTTGCTGTA
TAGAGCTTATACCTGACGTCATCAGTGCTGCTATCCTCGGCATGACCGTA
CATGTCGCAAACAAACTTTTGGATGTTTTCGTGCATATCTTCAGATACGT
CAGGGGTTTCTCCCAAGCGTGAAAATAGTTCCACATACTCTTTCTTCTTC
GCCATTAATTTAAATGGTTTGGCCTTTCCTTTACCAGAAAAGGCGCTAAC
TGTATCGCAGCCAGTGAAAGCGTGAATCCCTAGAAGAGCTTGACATAGCA
GATCTAGGTCTTGATCAGGGAAACGTTTCTTCAGGGAGGATCTTATTCTC
TGA
Run BLAST on NCBI

protein sequence of TCONS_00057910-protein

>TCONS_00057910-protein ID=TCONS_00057910-protein|Name=TCONS_00057910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MRTAYQIYVWRSCLKNRQNLPHPANFGWKEHDDGNLEIRWNTVLPAPEEI
LELMFCSCTKQCVAGKCPCIDNGLFCTDACKKKNCDNFPDEDVVDLNEYV
DEEEFDENNEDFGFFRAPLKF
Run BLAST on NCBI

transcript from alignment at scaffold_301:67279..68131

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057910 ID=TCONS_00057910|Name=TCONS_00057910|organism=Clytia hemisphaerica|type=transcript|length=853bp|location=Sequence derived from alignment at scaffold_301:67279..68131 (Clytia hemisphaerica)
TCAGAGAATAAGATCCTCCCTGAAGAAACGTTTCCCTGATCAAGACCTAG
ATCTGCTATGTCAAGCTCTTCTAGGGATTCACGCTTTCACTGGCTGCGAT
ACAGTTAGCGCCTTTTCTGGTAAAGGAAAGGCCAAACCATTTAAATTAAT
GGCGAAGAAGAAAGAGTATGTGGAACTATTTTCACGCTTGGGAGAAACCC
CTGACGTATCTGAAGATATGCACGAAAACATCCAAAAGTTTGTTTGCGAC
ATGTACGGTCATGCCGAGGATAGCAGCACTGATGACGTCAGGTATAAGCT
CTATACAGCAAAACAAGGTCAAGCTGAGGCGAAATCTCTACCCCCCCCTG
CTCCGATAGCTTGAGGCTTCATACAATGAGAACAGCTTACCAAATCTACG
TATGGAGATCGTGTTTGAAGAATCGTCAAAATTTACCACATCCTGCTAAC
TTTGGTTGGAAAGAACATGACGATGGTAATCTTGAGATAAGATGGAATAC
TGTTCTTCCAGCTCCAGAAGAAATCTTGGAACTGATGTTTTGTAGCTGCA
CGAAGCAGTGTGTAGCTGGAAAGTGCCCTTGCATTGACAACGGTCTTTTC
TGCACAGACGcttgcaaaaagaaaaattgcgaTAACTTCCCTGACGAAGA
TGTTGTCGACCTGAATGAGTATGTTGATGAGGAGGAGTTTGATGAAAACA
ATGAAGACTTTGGATTTTTTCGAGCCCCTTTGAAGTTTTAGTCGAGGGTT
TAATGAACTGATTTAATGTAGAACTGTTGTATAGTTTGAAATAGTTTATG
ACGAATCAAACACATTGTCATTATTGAAGGGGTTAACCGGAAATCATATG
AAA

Coding sequence (CDS) from alignment at scaffold_301:67279..68131

>TCONS_00057910 ID=TCONS_00057910|Name=TCONS_00057910|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_301:67279..68131 (Clytia hemisphaerica)
ATGAGAACAGCTTACCAAATCTACGTATGGAGATCGTGTTTGAAGAATCG
TCAAAATTTACCACATCCTGCTAACTTTGGTTGGAAAGAACATGACGATG
GTAATCTTGAGATAAGATGGAATACTGTTCTTCCAGCTCCAGAAGAAATC
TTGGAACTGATGTTTTGTAGCTGCACGAAGCAGTGTGTAGCTGGAAAGTG
CCCTTGCATTGACAACGGTCTTTTCTGCACAGACGcttgcaaaaagaaaa
attgcgaTAACTTCCCTGACGAAGATGTTGTCGACCTGAATGAGTATGTT
GATGAGGAGGAGTTTGATGAAAACAATGAAGACTTTGGATTTTTTCGAGC
CCCTTTGAAGTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036517XLOC_036517Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057910-proteinTCONS_00057910-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057910-exon-scaffold_301-1491911889:67279..68131TCONS_00057910-exon-scaffold_301-1491911889:67279..68131Clytia hemisphaericaexon
TCONS_00057910-exon-scaffold_301-1510915933:67279..68131TCONS_00057910-exon-scaffold_301-1510915933:67279..68131Clytia hemisphaericaexon
TCONS_00057910-exon-scaffold_301-1575043694:67279..68131TCONS_00057910-exon-scaffold_301-1575043694:67279..68131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_301supercontigscaffold_301:67279..68131 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0550897	0.161163	0.124751	0.305123	0.965789	0.821886	1.48736	1.98921	1.06773	1.89758	1.84184	1.54096	0.586214	0.913184	0.844607	0.436411	0.537623	0.46627	1.63972	0.612804	0.532638	0.389703	0.315824	0.631685	1.53783	0.950176	0.755389	1.28987	0.672598	0.373784
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR033467Tesmin/TSO1-like_CXC
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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