|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057923 ID=TCONS_00057923|Name=TCONS_00057923|organism=Clytia hemisphaerica|type=transcript|length=2773bpRun BLAST on NCBI protein sequence of TCONS_00057923-protein >TCONS_00057923-protein ID=TCONS_00057923-protein|Name=TCONS_00057923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp MLFTLRKHWKKSVFAACSITYAFHYGSQRFREYLTRRQYFFAAQGYGEACRun BLAST on NCBI transcript from alignment at scaffold_302:269075..294365+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057923 ID=TCONS_00057923|Name=TCONS_00057923|organism=Clytia hemisphaerica|type=transcript|length=25291bp|location=Sequence derived from alignment at scaffold_302:269075..294365+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_302:269075..294365+ >TCONS_00057923 ID=TCONS_00057923|Name=TCONS_00057923|organism=Clytia hemisphaerica|type=CDS|length=17910bp|location=Sequence derived from alignment at scaffold_302:269075..294365+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057923 vs. Swiss-Prot (Human)
Match: AGK (Acylglycerol kinase, mitochondrial OS=Homo sapiens GN=AGK PE=1 SV=2) HSP 1 Score: 201.445 bits (511), Expect = 3.022e-56 Identity = 137/426 (32.16%), Postives = 225/426 (52.82%), Query Frame = 3
Query: 81 TLRKHWKKSVFAACSITYAFHYGSQRFREYLTRRQYFFAAQGYGEACISPLDKPRRLYVVLNPAASNRKAKKLFQTNAAPLLYLAGIDVTYIQTDYEGHAKTIVNYFDPTIDGIVVVGGNGTIQEVVTGIMRQDEKNPVINIPVGIVPTGEQSNALFKRLFGSDVINVKAMCESAMAIIQGQSSLVDVVEVKTD-QKSIFALNSIHVGLHQQVKEKLDDGKYWILGPLKRYFACGWKTIKNWPPIENGISVTCSKCSSISRTTHQEQP---------------NSLLSKAACF--TDEELLTQK---ESVGSNKITTSGLSVWL--TELDQRSS---FTVQYNADEVSKTEFIQHGAQWIKNKYKHTPADHLKTVIC---DELSITLNKGQELSYDIDGEIYDGRPIHVSVYPRKLHMFV-PKK*E 1268
TLR HWKK+ C +T+ H+ + + L RR AQ +G I P + ++ V LNPAA KA+ LF+ NAAP+L+L+G+DVT ++TDYEG AK ++ + T D I+V GG+GT+QEVVTG++R+ ++ IP+G +P GE S +L LF V+ + ++ +AI++G++ +DV+++K + ++ +FA+ + G + K+ KYW LGPLK A + T+K WP +SIS T E+P +L + A + ++ L+Q+ E +++T LS+ +LD S + D +SK +FI G++ ++N P H++ C + ++ + +G S+ ID E Y+ P+ V + PRKL F P+K E
Sbjct: 7 TLRNHWKKTTAGLCLLTWGGHWLYGKHCDNLLRRAACQEAQVFGNQLIPPNAQVKKATVFLNPAACKGKARTLFEKNAAPILHLSGMDVTIVKTDYEGQAKKLLELMENT-DVIIVAGGDGTLQEVVTGVLRRTDEATFSKIPIGFIPLGETS-SLSHTLFAESGNKVQHITDATLAIVKGETVPLDVLQIKGEKEQPVFAMTGLRWGSFRDAGVKVS--KYWYLGPLKIKAAHFFSTLKEWPQTHQ---------ASISYTGPTERPPNEPEETPVQRPSLYRRILRRLASYWAQPQDALSQEVSPEVWKDVQLSTIELSITTRNNQLDPTSKEDFLNICIEPDTISKGDFITIGSRKVRN-----PKLHVEGTECLQASQCTLLIPEGAGGSFSIDSEEYEAMPVEVKLLPRKLQFFCDPRKRE 414 The following BLAST results are available for this feature:
BLAST of TCONS_00057923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.