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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057925 ID=TCONS_00057925|Name=TCONS_00057925|organism=Clytia hemisphaerica|type=transcript|length=1835bp
tcagagaattgaaaaataatagaaaaaatatttatcattaTGGGACGATC
ATCGAAAGACAAACGAGATGTGTATTACAGATTAGCCAAAGAGGGTGGAT
GGAGGGCGCGAAGTGCCTTCAAATTATTACAGATCAATGAAGAATTTGAC
TTATTTACGGGCGTTAAAAGAGTTGTTGATTTATGTGCCGCCCCCGGTAG
TTGGAGCCAAGTCCTTTCACGAAAATTGATTGAAGAACGAAAAGAGGAAA
GCGAAGAAGCAAATGATGTGAAGATTGTAGCGGTGGACTTACAAGCTATG
GCTCCTCTGCCAGGTGTCATTCAATTACAAGGTGATATTACCAAGgtaTC
AACAGCAAATGAGATTATTAAGCACTTCGAAGGAGAACCTGCTGATTTAG
TAGTATGCGATGGAGCGCCTGACGTCACTGGTCTTCACGACATAGACGAG
TATATTCAAGGACAATTATTATTGGCTGCTTTCAACATTACGTCACACGT
TTTGAAAAAGGGTGGGAATTTTGTAGCTAAGATTTTCCGTGGAAAAGACG
TGGACTTGTTATATTCTcagttgaaattatttttccctGAAGTGACAGTT
TGTAAACCAAGAAGTAGTCGTAATTCTTCCatagaatcttttgttgtttg
tttaaATTATTCGCCACCTGATGGTTACACACCCACCATGGCTAACCCGC
TGTTGAACCAAGATCTTGATTACTCGAGtTTACAAGGTATTAACCGAGTT
GTAACTCCTTTCATGGCATGTGGTGATTTGAATTCATACGATTCCGATAT
GACTTATCCTCTGCAACTTGAAGGCGAAAAAGAATACCAACAACTTCCTC
CGACCCAGGCCCCAATAAAACCACCCTATCAAACCGCGTGTGATATGAAG
AAAAAGAACTTGTTACAAAACGAACAATCAAATGTTAAAGAAAGTAGTAA
GGACATAGTGGATGATGAAAAAGCTGTAAGCGAAGGGTAGACGTTATTAG
TTTTAGGTTCTGAAACAGGGGGTCATGTAGTTACTGCAAGACagcaccac
cctttttagttgCCACCTATTTCTAGTAACTGCTTTTCACTTAAAAATAT
TTGCTGAAGCACCCTTTGCGAGCCTTTTTCCTTAAATTTGgtccaaatca
aaaaatttcagaaaaatcgtatgagaaataaagaaaattttgaaatttcg
aaattgTTTGGAACTTTTTCTCAAATTACCATTTTTAGGGAGTTCCTAGT
AATTTAGCAGTGACTATGCTAAAATTCATCAGACACTTATGACAATGTTC
AAAACCCACAGTAAGAAATGTTAGTGTCAAATAGTAATTGAATGACCCCC
CTTTCTGAAATCGTTTAGCACTTTTATTTCACTAAGACGCTTTACACATT
TTTATAAACTTAGTGATAAATTTTGTGACCTGATTATTTCTTTCTGGTTT
AAATATGCTCAATTATATTTTTACGTTATCTTTGTGTGATATTTTGGACT
TGTTGATGGCGcatttgctcactttttgactttttttaattcaatttttt
ttttttaattttagagctaaaattattttaagatgCTTTAAAAACTCTCG
AATTAGTCGTCTCTGGTTTCGTCTCTTGATGATTTTTGAAAGGACAGTCA
ATTcaatgttttaaagttttgtacTATGATAAATGCTTAGGCAAGAATGC
ttatgtttttgaatgaaatgagTCTGCAAACGTTATGCTTATGAAAAATA
TGTATTTATTTACTGTATCGTGTGAATTTTTTTGACTCCTTGTGGTTTCT
TCATTCGAGATGCTGAAATATTAATAATTATCGTG Run BLAST on NCBI transcript from alignment at scaffold_302:295242..298158+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057925 ID=TCONS_00057925|Name=TCONS_00057925|organism=Clytia hemisphaerica|type=transcript|length=2917bp|location=Sequence derived from alignment at scaffold_302:295242..298158+ (Clytia hemisphaerica)
tcagagaattgaaaaataatagaaaaaatatttatcattaTGGGACGATC
ATCGAAAGACAAACGAGATGTGTATTACAGATTAGCCAAAGAGGGTGGAT
GGAGGGCGCGAAGTGCCTTCAAATTATTACAGATCAATGAAGAATTTGAC
TTATTTACGGGCGTTAAAAGAGTTGTTGATTTATGTGCCGCCCCCGGTAG
TTGGAGCCAAGTCCTTTCACGAAAATTGATTGAAGAACGAAAAGAGGAAA
GCGAAGAAGCAAATGATGTGAAGATTGTAGCGGTGGACTTACAAGCTATG
GCTCCTCTGCCAGGTGTCATTCAATTACAAGGTGATATTACCAAGGTATG
TCAATCTTTATCATTGGATTTTACAAGTCTTTGtaattggattaattttt
aCGCGGGACAAAATCTCGCAAGTCGGCCTCGTTTTCAtccaatttctttc
attttcattggggttttgtggattttatatttttcacgAGGACTAattct
cgcgaaatttaatccacgtaAGATAGCTTCCTCGGAGTACATTCTTTGAG
AATACAACTTGATTATAATGATATGTTTGTAGCAGTAGACAATGTTTCTT
TTTCAATCAAGTTTGCTTAATTATTTTTCCTTTCGAAAATTAGAAACGAG
GAAGTAACTTGGAATGAAATAAgtcatgaaatatttcaaaagttttggca
TTTGCGTATATTGTGTGCTCTTTTTAATATCATCGCCTTCCNAAAGTTTG
CCATTTGCGTATATTGTGTGCTCTTTTTGATATCATCATATCCTTCCTTT
TCATGAAGAAAAGAAATGTAAAAGAATTGTTGCCAAAACAAGCAAGGGAT
CGATCACTGTTAGCTTtatgaaaagatattttgtcTGTCGTTTACTTCTT
CCATCCTGACCATATTATCTACTTTGTCAACTTTTAAAATTCAAGCTgtc
agtctgttcctctaaataATCCTGCATtttaacacgcatgcgtaatttgt
cgttcttttaaaccacatgtagttaattcccgtgataaacgaaggggaat
gaatcgctaggggtggtacagtcacaacaaaaatctacaaattcaaaatt
ttgatttttaggtaTCAACAGCAAATGAGATTATTAAGCACTTCGAAGGA
GAACCTGCTGATTTAGTAGTATGCGATGGAGCGCCTGACGTCACTGGTCT
TCACGACATAGACGAGTATATTCAAGGACAATTATTATTGGCTGCTTTCA
ACATTACGTCACACGTTTTGAAAAAGGGTGGGAATTTTGTAGCTAAGATT
TTCCGTGGAAAAGACGTGGACTTGTTATATTCTcagttgaaattattttt
ccctGAAGTGACAGTTTGTAAACCAAGAAGTAGTCGTAATTCTTCCatag
aatcttttgttgtttgtttaaATTATTCGCCACCTGATGGTTACACACCC
ACCATGGCTAACCCGCTGTTGAACCAAGATCTTGATTACTCGAGGTAAGT
TTCGCAAACTAGGAATAACGCGTGGATAATAGGTTTCTCAATTATGAATC
TCGATAAGATTTTCTCAGAGAAAAACTTCCAAATCGAAAGTTAAAAAGTG
ACAAATGATTTATACAAAAGGAGCGAAATATCGAGAAATAAAGAATCAAC
TTACTTGAGTAAAGTAACTTCAGTTTCTTTATACCCCGATATTTTGCTcg
aattttttctaatttatttcACTGTATACAGAATGAGCTATTAGGTACTT
GTGATACACTCTTCTAGCTTTAGATGAACAAAATattatttgatttgttt
tcttttccagtTTACAAGGTATTAACCGAGTTGTAACTCCTTTCATGGCA
TGTGGTGATTTGAATTCATACGATTCCGATATGACTTATCCTCTGCAACT
TGAAGGCGAAAAAGAATACCAACAACTTCCTCCGACCCAGGCCCCAATAA
AACCACCCTATCAAACCGCGTGTGATATGAAGAAAAAGAACTTGTTACAA
AACGAACAATCAAATGTTAAAGAAAGTAGTAAGGACATAGTGGATGATGA
AAAAGCTGTAAGCGAAGGGTAGACGTTATTAGTTTTAGGTTCTGAAACAG
GGGGTCATGTAGTTACTGCAAGACagcaccaccctttttagttgCCACCT
ATTTCTAGTAACTGCTTTTCACTTAAAAATATTTGCTGAAGCACCCTTTG
CGAGCCTTTTTCCTTAAATTTGgtccaaatcaaaaaatttcagaaaaatc
gtatgagaaataaagaaaattttgaaatttcgaaattgTTTGGAACTTTT
TCTCAAATTACCATTTTTAGGGAGTTCCTAGTAATTTAGCAGTGACTATG
CTAAAATTCATCAGACACTTATGACAATGTTCAAAACCCACAGTAAGAAA
TGTTAGTGTCAAATAGTAATTGAATGACCCCCCTTTCTGAAATCGTTTAG
CACTTTTATTTCACTAAGACGCTTTACACATTTTTATAAACTTAGTGATA
AATTTTGTGACCTGATTATTTCTTTCTGGTTTAAATATGCTCAATTATAT
TTTTACGTTATCTTTGTGTGATATTTTGGACTTGTTGATGGCGcatttgc
tcactttttgactttttttaattcaattttttttttttaattttagagct
aaaattattttaagatgCTTTAAAAACTCTCGAATTAGTCGTCTCTGGTT
TCGTCTCTTGATGATTTTTGAAAGGACAGTCAATTcaatgttttaaagtt
ttgtacTATGATAAATGCTTAGGCAAGAATGCttatgtttttgaatgaaa
tgagTCTGCAAACGTTATGCTTATGAAAAATATGTATTTATTTACTGTAT
CGTGTGAATTTTTTTGACTCCTTGTGGTTTCTTCATTCGAGATGCTGAAA
TATTAATAATTATCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057925-exon-scaffold_302-1491911889:295242..295586 | TCONS_00057925-exon-scaffold_302-1491911889:295242..295586 | Clytia hemisphaerica | exon |
| TCONS_00057925-exon-scaffold_302-1510915933:295242..295586 | TCONS_00057925-exon-scaffold_302-1510915933:295242..295586 | Clytia hemisphaerica | exon |
| TCONS_00057925-exon-scaffold_302-1575043694:295242..295586 | TCONS_00057925-exon-scaffold_302-1575043694:295242..295586 | Clytia hemisphaerica | exon |
| TCONS_00057925-exon-scaffold_302-1491911889:296353..296735 | TCONS_00057925-exon-scaffold_302-1491911889:296353..296735 | Clytia hemisphaerica | exon |
| TCONS_00057925-exon-scaffold_302-1510915933:296353..296735 | TCONS_00057925-exon-scaffold_302-1510915933:296353..296735 | Clytia hemisphaerica | exon |
| TCONS_00057925-exon-scaffold_302-1575043694:296353..296735 | TCONS_00057925-exon-scaffold_302-1575043694:296353..296735 | Clytia hemisphaerica | exon |
| TCONS_00057925-exon-scaffold_302-1491911889:297052..298158 | TCONS_00057925-exon-scaffold_302-1491911889:297052..298158 | Clytia hemisphaerica | exon |
| TCONS_00057925-exon-scaffold_302-1510915933:297052..298158 | TCONS_00057925-exon-scaffold_302-1510915933:297052..298158 | Clytia hemisphaerica | exon |
| TCONS_00057925-exon-scaffold_302-1575043694:297052..298158 | TCONS_00057925-exon-scaffold_302-1575043694:297052..298158 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_302 | supercontig | scaffold_302:295242..298158 + |
Blast
BLAST of TCONS_00057925 vs. Swiss-Prot (Human)
Match: TRM7 (Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Homo sapiens GN=FTSJ1 PE=1 SV=2) HSP 1 Score: 382.874 bits (982), Expect = 1.082e-127 Identity = 198/297 (66.67%), Postives = 234/297 (78.79%), Query Frame = 1
Query: 40 MGRSSKDKRDVYYRLAKEGGWRARSAFKLLQINEEFDLFTGVKRVVDLCAAPGSWSQVXXXXXXXXXXXXXXXANDVKIVAVDLQAMAPLPGVIQLQGDITKVSTANEIIKHFEGEPADLVVCDGAPDVTGLHDIDEYIQGQLLLAAFNITSHVLKKGGNFVAKIFRGKDVDLLYSQLKLFFPEVTVCKPRSSRNSSIESFVVCLNYSPPDGYTPTMANPLLNQ--DLDYSSLQGINRVVTPFMACGDLNSYDSDMTYPLQLEGEKEYQQLPPTQAPIKPPYQTACDMKKKNLLQNE 924
MGR+SKDKRDVYYRLAKE GWRARSAFKLLQ+++EF LF GV R VDLCAAPGSWSQVLS+K+ + +VAVDLQAMAPLPGV+Q+QGDIT++STA EII+HF+G PADLVVCDGAPDVTGLHD+DEY+Q QLLLAA NI +HVLK GG FVAKIFRG+DV LLYSQL++FF V KPRSSRNSSIE+F VC Y PP+G+ P ++ PLL+ D D++ L G R++ PF+ CGDL+SYDSD +YPL LEG EY+ PPTQ PI PPYQ AC +K+K L E
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQ--------GSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKE 289
The following BLAST results are available for this feature:
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