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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057928 ID=TCONS_00057928|Name=TCONS_00057928|organism=Clytia hemisphaerica|type=transcript|length=1137bp
CCATTTATCATTTTGGCAATGCCTTTATGAAAAATATACCAATATTTACA
AAGTTTCTGCAGAAGCTACATTAAAGTATGCTTGATTGAGTCTTAGTAAA
GGTTTTTTCTGAATGAATATGTGTCTATACTCCATTTTATAAAAACCACA
GTTGTCGGGCTGGCACCGGTCAAGCACAAAACAAGGGAAATGGTAAACGG
CTAACACCTGCAACGACCATAACCTTATGAAAAATGAGTCAATTTCTCCC
AAATTTCTGCATAAGCTGTACTGAAGTAAGCATGATAACTCTAGCCATAC
TCCACGGTACCAATTCATTCTTTTAGGCCATAACTTTATGAAAATTTAGT
cgatattttccaaatttctacAGGAACTGTATTATTGGAGTATACTGAAC
CTAATTCCAATAAAGGTTTCTTCTAAATAAATCTGTATCCATGATGTAAA
ATAAAGGTGACGGCCGTCAAAAGCACGGACAAGCACGGTGTTAGGATTGT
TGAAGTCCAGTTTGGCCTAATACttcatgaaaaattgatcaaTGTTTCTC
AAATTTATACAGGAGCTGTACTGAAGTNCGGTTAGGATTGTTGAAGTCCA
GTTTGGCCTAATACttcatgaaaaattgatcaaTGTTTCTCAAATTTATA
CAGGAGCTGTACTGAAGTATGCTGAGTCAAATTCCAAAAGAAGTTTCTTC
TACATAAGTCTGTGTCAGAAATGTAAAATCAAAGTAATAACCGCTACAAT
CATGAACATTGGCCGTCTCCAGCGGTGCATCACTTTGGGTCATAACTCCT
TCAAAAATGGAGCAATCTGTCTCAAATTTCTACAGGAGCTGTAATGATGT
ATGCTCAATCGAAATCCAGTTGAGTTTTCTTCTGAATAAAATCGTGTCCA
TGATGTAAAATCAAAGTGACCAACCAACCAAGTACAAGAAATCAGTTCTG
CATCAAACATTCAAATTCCACagcaaaaagaacaaaaaaactcCCAGTAA
ATTGGGATTAGAGAAACCAACTACTCTATCACAATTTTTAATACTTTTCA
TGTTCTTATATCGTTGATTTGGTAGTATATTTcatagaaaatgaagaaat
ttcagtcaaaaattctGCTTGAAGCTGTGAAGGCTTA Run BLAST on NCBI transcript from alignment at scaffold_302:319140..320483+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057928 ID=TCONS_00057928|Name=TCONS_00057928|organism=Clytia hemisphaerica|type=transcript|length=1344bp|location=Sequence derived from alignment at scaffold_302:319140..320483+ (Clytia hemisphaerica)
CCATTTATCATTTTGGCAATGCCTTTATGAAAAATATACCAATATTTACA
AAGTTTCTGCAGAAGCTACATTAAAGTATGCTTGATTGAGTCTTAGTAAA
GGTTTTTTCTGAATGAATATGTGTCTATACTCCATTTTATAAAAACCACA
GTTGTCGGGCTGGCACCGGTCAAGCACAAAACAAGGGAAATGGTAAACGG
CTAACACCTGCAACGACCATAACCTTATGAAAAATGAGTCAATTTCTCCC
AAATTTCTGCATAAGCTGTACTGAAGTATAAGCTTAATAAAGTTTCAGTA
AAGGTTTCTTCCTACTTGTNNNNNNNNNTatatttttatatctttatctt
agctattaaaccttttcatttttgtatttttacgtagaatttgcgagatt
aggcattttttgtcttatgcaaatataaaaactagatctAGAACCTACTT
GTACATAATTCAAAATGACAATGTCCGCCGGAACAAGCATGATAACTCTA
GCCATACTCCACGGTACCAATTCATTCTTTTAGGCCATAACTTTATGAAA
ATTTAGTcgatattttccaaatttctacAGGAACTGTATTATTGGAGTAT
ACTGAACCTAATTCCAATAAAGGTTTCTTCTAAATAAATCTGTATCCATG
ATGTAAAATAAAGGTGACGGCCGTCAAAAGCACGGACAAGCACGGTGTTA
GGATTGTTGAAGTCCAGTTTGGCCTAATACttcatgaaaaattgatcaaT
GTTTCTCAAATTTATACAGGAGCTGTACTGAAGTNCGGTTAGGATTGTTG
AAGTCCAGTTTGGCCTAATACttcatgaaaaattgatcaaTGTTTCTCAA
ATTTATACAGGAGCTGTACTGAAGTATGCTGAGTCAAATTCCAAAAGAAG
TTTCTTCTACATAAGTCTGTGTCAGAAATGTAAAATCAAAGTAATAACCG
CTACAATCATGAACATTGGCCGTCTCCAGCGGTGCATCACTTTGGGTCAT
AACTCCTTCAAAAATGGAGCAATCTGTCTCAAATTTCTACAGGAGCTGTA
ATGATGTATGCTCAATCGAAATCCAGTTGAGTTTTCTTCTGAATAAAATC
GTGTCCATGATGTAAAATCAAAGTGACCAACCAACCAAGTACAAGAAATC
AGTTCTGCATCAAACATTCAAATTCCACagcaaaaagaacaaaaaaactc
CCAGTAAATTGGGATTAGAGAAACCAACTACTCTATCACAATTTTTAATA
CTTTTCATGTTCTTATATCGTTGATTTGGTAGTATATTTcatagaaaatg
aagaaatttcagtcaaaaattctGCTTGAAGCTGTGAAGGCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057928-exon-scaffold_302-1491911889:319140..319416 | TCONS_00057928-exon-scaffold_302-1491911889:319140..319416 | Clytia hemisphaerica | exon |
| TCONS_00057928-exon-scaffold_302-1510915933:319140..319416 | TCONS_00057928-exon-scaffold_302-1510915933:319140..319416 | Clytia hemisphaerica | exon |
| TCONS_00057928-exon-scaffold_302-1575043694:319140..319416 | TCONS_00057928-exon-scaffold_302-1575043694:319140..319416 | Clytia hemisphaerica | exon |
| TCONS_00057928-exon-scaffold_302-1491911889:319624..320483 | TCONS_00057928-exon-scaffold_302-1491911889:319624..320483 | Clytia hemisphaerica | exon |
| TCONS_00057928-exon-scaffold_302-1510915933:319624..320483 | TCONS_00057928-exon-scaffold_302-1510915933:319624..320483 | Clytia hemisphaerica | exon |
| TCONS_00057928-exon-scaffold_302-1575043694:319624..320483 | TCONS_00057928-exon-scaffold_302-1575043694:319624..320483 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_302 | supercontig | scaffold_302:319140..320483 + |
Blast
The following BLAST results are available for this feature:
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