TCONS_00057939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057939
Unique NameTCONS_00057939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057939 ID=TCONS_00057939|Name=TCONS_00057939|organism=Clytia hemisphaerica|type=transcript|length=1341bp
TGGGTATCGTATTTTAAAACAGAGACATACGATTATCAAGTATACTTCAT
ATCAACAATAAAACATTTAATCAAGGCAAAAAGGTTGTAAGAAGGAAGAG
AGAGACACAATTTTGGTCTACTACCCACTAGAAAATGAACACAGTTTTAC
TCATCCTTTTTTCAATAACAACTGGAGCATCATGGGTATCCACAATGCAT
CAGGACCGCATCAATGCATTGCACGAAGACATGGACGAGGTTGATCCCCA
TTACTACAAACCACTACCATTGCCCTTGAAAGATGCGATAATTTATGTCA
AGAAGTATGGTCCGTATGCAGCAGAAAAGAGAATTAAAGTGAAACGGAGA
CATAGCAAGAAATCGATCAAACTTATGGAATGCAAACAACGTGACCGACC
TCCCAaatGTGAGCGTCAAGTGAATGGTTGTGGGTCGGGCTTCACTGAAT
CTGTACCTCTCCTCTTTCGTGATAAGTTTACATCAAGCTGCAACAAACAC
GATGTCTGTTATGATTGCGGATTTGCGAGAAACTGGACACGATCGGACTG
TGATAACACTTTATACCAAGACGCTGTGGATGCTTGTGAGTGCGCTTATC
CTGGTTTTCTAGCCTCTGCAGAACGTTTAGCATGCAGAGAAATGGCCGAG
TCGATCTATATGGCTGTTCGTGTATTCAGTGAAAGTTACTTTAGTACACA
TATCAAGGACTTTTGTTTGAACGATTGTGTATTGTCATATGGAAGCCCTA
AATTGAGCAATATGGTATGAAGTAAAGGATTATGGGTAAAAGACGTTCTC
TATTCGCGATCAAATACATAGTATTTCAATTGACAAATGACTCTATTGAC
TTTGTATTGAAATTGTGTTACATTAAGAAGGAATTAATTTcggtaaattt
tctttttaattttgttatCAAACAAATTAGTTCTCAttagaatttaaaaa
gattCATTCAatctcaccaaaattagttcccttaaccTAAGTACCACGGT
CTTTTTTTCtagatcactcgttgaccaaaaatcgtcaaaaaaaacgatca
aaatctcaaaaaagtggatttttggcaaatttttgcatttttttgacttt
ttggcttaaaatctcgctggaaagactcacttttgatttttttttacttg
accatgaagcacaattcaatttctaaagctagaaataattttttctctct
GAGGTcctttattttaaatatttatgaCCAAATTTGTCAAGTTTCATTTT
TCCTTCCACATTCTTGTGtgaagaaatattttctatatttgtgttttttt
tatctaaacaTTGGTTATGAGTACGTCTGCGAGAAGATCGC
Run BLAST on NCBI

transcript from alignment at scaffold_302:378935..383205+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057939 ID=TCONS_00057939|Name=TCONS_00057939|organism=Clytia hemisphaerica|type=transcript|length=4271bp|location=Sequence derived from alignment at scaffold_302:378935..383205+ (Clytia hemisphaerica)
TGGGTATCGTATTTTAAAACAGAGACATACGATTATCAAGTATACTTCAT
ATCAACAATAAAACATTTAATCAAGGCAAAAAGGTTGTGTGACTCTTAAC
TCCAGGACTTAATAGTGGTTTTCAAATGTAGCCTCTGCTTTTCATggctt
ttcaatttctttttgaaatttgttgattTAAGCCCTCCCTGGAAACAAAC
TAACGCACATAGTTATGGAGGATTGACCTTTCTTGAACTAACATTGTACT
GCAATCGACAAAGTATTAAAAACAGTTCAAGATTAACATGGACCACCCCT
TATTTGTAAATGGTGTAAAAATACTAAACTTTAGTGTGTGATTTCTTATG
ATGATCAGTTTTCACTCTTATCTCAACGTTTTGCTTCAGTAGGTTGTAAG
AAGGAAGAGAGAGACACAATTTTGGTCTACTACCCACTAGAAAATGGTAA
TTTTTATTTGGGTTTTTTGTTTTAAACCATGCTACATTTGCCTGCTTTTC
ATTTCCATCTTTTCGGTTTCTTAAGCCAAGAAGAGTATACTCTACACAAA
GGAAAATGAAACGGATTTCTTGCGATCTTCTTTTCTATTTCAGAACACAG
TTTTACTCATCCTTTTTTCAATAACAACTGGAGCATCATGGGTATCCACA
ATGCATCAGGACCGCATCAATGCATTGCACGAAGACATGGACGAGGTTGA
TCCCCATTACTACAAACCACTACCATTGCCCTTGAAAGATGCGATAATTT
ATGTCAAGAAGTATGGTCCGTATGCAGCAGAAAAGAGAATTAAAGTGAAA
CGGAGACATAGCAAGAAATCGATCAAACTTATGGAATGCAAACAACGTGA
CCGACCTCCCAGTAAGTCAATATACTTCATTTTATGCTAGTATATTTTGG
ACAGAGATAATACTTTGATAGCATAAAAcgcttttatttaaaaaaatatt
actgAAGCGGTAGAATTTATTACCCAGGCTATTGCTTAAATCTCAAAACG
GAACATTAGAATTCAGGACCttgtttcattcaaaaacactttcaaaattg
atataatttaattttctcGTAATTCCTCTCAAAAAACATAATTCAATCAA
TTTCTGCTTTTTGGCTTATAAATCGAAATGTTAATTCAATCAAATATCCC
CGACTAAATACAGGAAGGAAAAAGTCGAAATACAGATATTAAAAAtctta
tcggcgatccaaaaaatatctgcagtCTGATTGGTTGTAAACAGTACgat
atattttgtattttacatgtacaaaatataaattgacgaaaagatgttgt
tgcattgtagtgGGAGCAGTAAtctaaggcgaaaataaaaaaatgtagtg
tttctggaatgcgggtgaaggaaaaaagctctcatgcgggcCAAACGACA
ACTATTATAAACGATACAAACTATTACTTATTGTCTTAAGGGGGCATGTT
GTAAGGCTATCTGAAAACAGTGAAATTtggacgaacgtactttttgaatg
cccCCCCTCCCCCAATAGTCAATAGTAATATCTAGAACCGTTTTTCTGAT
TCAAACATTTGCAATTAAAGCATTTTTGATGACTTGTGACTAGAGTCTCT
AAATTTAAATAGTGGTTGGTTGGATTCGACTGAATTGACATACTTATGCC
TTGGGCATACTTGCGCGAACGTTTAATTATTAATTATAGTGAGTGCTATG
TTCTTAGTGTGCACATACTCTCGGGTACCTAATAGCCGTCCCCCCCCCAA
TATTTTTGAAAGTTCCCTCTTTTGTCCTAATTCAACTGTATTAGTATCTT
TTTCAAAAATTTTCCACCCAGGACATTTTTATTCCAACCCCCACCCTGCT
TATTAAGTTTTGAGATTTTTCCAACCCCCCCCTCCCCCggctattaggta
cccgagagtacttgtTACAAACCAACTaatgttttttaaatgatcaattt
ggtctataagatcacaaaaacgagtggtgagaaaaattcGGTCCccatat
gacgtcatcatttgcttaggcttgaaaatgaaagtgaaaattacaAGCTC
AAATATGGCTCAGATGAAAAATATTCATCCAAAGATTAAACAAATATCAC
AACatttatctgaaaatgaatacacgtttttttttttttaagaaacacac
ttttaagaaacatgaggctcagaatgcctaaaaactaagaaacatctaag
aaacatgccgaggctgagaatgagaaaataacatttttaaaacggttttt
ttagaaccttccaatctttgcgtgaaaaataggctgattatgtcaaaaag
tttagaaacatgtaagaaacatttaaggctcaaaaggccgatttcttaag
aaacattgaggctgcttggtaaaactagtttcttaaaaaaaaaaaacgtg
tatttgaaaAGCAATAACGGAAAATAGCTCAAATAAGGAGTTCAACTTGA
CGTAATCGgtaattaaattgaaaatattttgttttatttgaaaGAAGATC
ATCTAGAGAACAAAAAATATCTCCAAAATGGATATTCCCTATGACACCgt
cattaaattttattttcagaatGTGAGCGTCAAGTGAATGGTTGTGGGTC
GGGCTTCACTGAATCTGTACCTCTCCTCTTTCGTGATAAGTTTACATCAA
GCTGCAACAAACACGATGTCTGTTATGATTGCGTAAGTCTGTCTCGAAAA
TCCGCTCAAGCTGCTTTCGATTACTTTCGTTTTAATTACATTCACAGTTG
GAATCGATATCAATTAAATTAGTCTCTTAAGCCTTTGACATGATTTGACC
CTATTCGGATTACTAAAATGGTATTTTTAGTCAAACAATGTTCGTGTCTG
AGGCGTAGTGGTGTCGTTGTCATCGCTCTTAACTCCCGTCTGGGTGGTcc
gagttcgattcccactgtagtactacggttcacttggcaagtgaacataa
cttcgcccgggtcaaaccataccatgtgaggggaattgtgTAACACTACT
CTGATGCAAGGGTGTGGGTGATatgccagacattgtggtgtgtaTGGTAT
CACCACTATGCATCATGGTATCTGTGTCTCGCGTGCACAGAACCAGCGGT
GTCTAGACAGCGCTAAGCGTTCCAACTTGAAAAGGAAGGAATTCCTACTT
CGTACGGAGTAGAACCCATCCCCAGTGGGGAGGGCTCATATTATATCATC
AATATTCGTGTCACAAGAGAGCCCTGTCTCACTCCCTCatctggaaaaaa
atatttacccaTCGGGAACATGAAAAAGATGAATATAAATAGGCTATATA
GAAAAGTCTCTTGCTTTTATGAGCAGTCCCTTGCTTTAATGTTAACCTTT
GAAATGTCAACTATTGTACCTTTAGTTATGATTGTTGGGCTGAAAAATGT
TTTACATTCTGCCGGACCCTGATGTTCATACTGTTTTATCATGTTCAGGG
ATTTGCGAGAAACTGGACACGATCGGACTGTGATAACACTTTATACCAAG
ACGCTGTGGATGCTTGTGAGTGCGCTTATCCTGGTTTTCTAGCCTCTGCA
GAACGTTTAGCATGCAGAGAAATGGCCGAGTCGATCTATATGGCTGTTCG
TGTATTCAGTGAAAGTTACTTTAGTACACATATCAAGGACTTTTGTTTGA
ACGATTGTGTATTGTCATATGGAAGCCCTAAATTGAGCAATATGGTATGA
AGTAAAGGATTATGGGTAAAAGACGTTCTCTATTCGCGATCAAATACATA
GTATTTCAATTGACAAATGACTCTATTGACTTTGTATTGAAATTGTGTTA
CATTAAGAAGGAATTAATTTcggtaaattttctttttaattttgttatCA
AACAAATTAGTTCTCAttagaatttaaaaagattCATTCAatctcaccaa
aattagttcccttaaccTAAGTACCACGGTCTTTTTTTCtagatcactcg
ttgaccaaaaatcgtcaaaaaaaacgatcaaaatctcaaaaaagtggatt
tttggcaaatttttgcatttttttgactttttggcttaaaatctcgctgg
aaagactcacttttgatttttttttacttgaccatgaagcacaattcaat
ttctaaagctagaaataattttttctctctGAGGTcctttattttaaata
tttatgaCCAAATTTGTCAAGTTTCATTTTTCCTTCCACATTCTTGTGtg
aagaaatattttctatatttgtgttttttttatctaaacaTTGGTTATGA
GTACGTCTGCGAGAAGATCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036531XLOC_036531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057939-exon-scaffold_302-1491911889:378935..379017TCONS_00057939-exon-scaffold_302-1491911889:378935..379017Clytia hemisphaericaexon
TCONS_00057939-exon-scaffold_302-1510915933:378935..379017TCONS_00057939-exon-scaffold_302-1510915933:378935..379017Clytia hemisphaericaexon
TCONS_00057939-exon-scaffold_302-1575043694:378935..379017TCONS_00057939-exon-scaffold_302-1575043694:378935..379017Clytia hemisphaericaexon
TCONS_00057939-exon-scaffold_302-1491911889:379327..379380TCONS_00057939-exon-scaffold_302-1491911889:379327..379380Clytia hemisphaericaexon
TCONS_00057939-exon-scaffold_302-1510915933:379327..379380TCONS_00057939-exon-scaffold_302-1510915933:379327..379380Clytia hemisphaericaexon
TCONS_00057939-exon-scaffold_302-1575043694:379327..379380TCONS_00057939-exon-scaffold_302-1575043694:379327..379380Clytia hemisphaericaexon
TCONS_00057939-exon-scaffold_302-1491911889:379528..379795TCONS_00057939-exon-scaffold_302-1491911889:379528..379795Clytia hemisphaericaexon
TCONS_00057939-exon-scaffold_302-1510915933:379528..379795TCONS_00057939-exon-scaffold_302-1510915933:379528..379795Clytia hemisphaericaexon
TCONS_00057939-exon-scaffold_302-1575043694:379528..379795TCONS_00057939-exon-scaffold_302-1575043694:379528..379795Clytia hemisphaericaexon
TCONS_00057939-exon-scaffold_302-1491911889:381504..381616TCONS_00057939-exon-scaffold_302-1491911889:381504..381616Clytia hemisphaericaexon
TCONS_00057939-exon-scaffold_302-1510915933:381504..381616TCONS_00057939-exon-scaffold_302-1510915933:381504..381616Clytia hemisphaericaexon
TCONS_00057939-exon-scaffold_302-1575043694:381504..381616TCONS_00057939-exon-scaffold_302-1575043694:381504..381616Clytia hemisphaericaexon
TCONS_00057939-exon-scaffold_302-1491911889:382383..383205TCONS_00057939-exon-scaffold_302-1491911889:382383..383205Clytia hemisphaericaexon
TCONS_00057939-exon-scaffold_302-1510915933:382383..383205TCONS_00057939-exon-scaffold_302-1510915933:382383..383205Clytia hemisphaericaexon
TCONS_00057939-exon-scaffold_302-1575043694:382383..383205TCONS_00057939-exon-scaffold_302-1575043694:382383..383205Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:378935..383205 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.50328	1.31706	1.34086	1.72571	2.48001e-07	0.269155	0.00289134	0	1.4268	0.878924	5.99845	3.26467	12.3774	15.3769	14.1095	10.221	1.52551	4.89318	11.0035	8.8964	7.55448	4.78978	20.5096	25.7455	7.86952	5.00479	20.8894	29.6314	109.455	125.388
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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