|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057943 ID=TCONS_00057943|Name=TCONS_00057943|organism=Clytia hemisphaerica|type=transcript|length=1118bp
CTAATAATTAACATATCAattaattcaattttaattATGCTTCCGCTCTC
TcaatcaaaatattataaaagaaGCTTTCTTACGTGTAAGAGGCATCACT
CGTCTTTTGATTCAAGTCCAAAGTAAACTAACATGAATTCATTGTGCACC
ATCATCCTATTTGTGTGCGTGATCAACGCAGTATTTGGTCGTTATTACTA
TGACAACGATAGAGCACCATGGAAACAATACAACGAGAAAAGAGATGACA
GACAACCGTCGTTTCTAACGAGAGATTCCTTTAGACAAGACAATGAGAAT
TTTCCAAGATTGCAAGATTCAAGATTCGCAAGATTTCATGATTTCCAAAA
AGAAGAGCCAAACCCGAACCGCCCACTTCCGATCCCTTTGAAAGACGCAG
TCCGGTATGTCCGACAATACGGGCCACATGCGGACATGTTGCGGGCAAAG
GAAGAAAAAGTGATGAGCTACAAATTCTCAGATGCAGTGAATCACTTTAG
GAATAAGAACAAACGATCTGAAGAACCAAAGTGTCAACGTCGAACGGGTG
ACCCAAAATGCAAACGAGACGTGAATGGTTGTGGATCTGGTTTCACTGAA
GGAATCCCTTTCTTTTTTCGTGAAGCTTTTACACCATGCTGCAACAAGCA
CGACGTCTGCTATGATTGTGGTGTGACAGATTCTTGGACGCGAAAAGAAT
GCGATACAGCTTTTTACAACGATATGGTGGATGTTTGTGAGTGCGAATAT
CCTAACTGGTCGCAATATGCACAATATCTGGCATGTCAGTTACGAGCATC
TGAGTTATGGGCAGCTGTTAATGTCTTCGCTGGATCATTTTTCGGTACCA
AAGAGAAGGCAGTGTGCAAACAACAATGTATCTTGCCCTATGGTAGTCCC
AAAATAAGCTTGTTGGAATAGTTCTGTCTTGCAATGAGCTTTAAAGATTT
CTGCTCCTGGGTTGTGACAAGCTAATCGAAACGGATATAACTTTCTAGTC
ATTTTTTTATGAGTTTATACtatttttttaaccctttgagtgccagggtc
cttttttctaagttttttttaaaaaatcgctagttcaaactttaagggct
tatatctcctgatctaga Run BLAST on NCBI transcript from alignment at scaffold_302:390344..392113+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057943 ID=TCONS_00057943|Name=TCONS_00057943|organism=Clytia hemisphaerica|type=transcript|length=1770bp|location=Sequence derived from alignment at scaffold_302:390344..392113+ (Clytia hemisphaerica)
CTAATAATTAACATATCAattaattcaattttaattATGCTTCCGCTCTC
TcaatcaaaatattataaaagaaGCTTTCTTACGTGTAAGAGGCATCACT
CGTCTTTTGATTCAAGTCCAAAGTAAACTAACATGGTAGGTGTACTAATA
ACTTTGTGTAGGGATTTTCATTATAAATCGGCGGTTATGGTTTTTATAGC
CTACCATTTTTGCATTGCATAACTTTATACTCGTTCTTTTTAGAATTCAT
TGTGCACCATCATCCTATTTGTGTGCGTGATCAACGCAGTATTTGGTCGT
TATTACTATGACAACGATAGAGCACCATGGAAACAATACAACGAGAAAAG
AGATGACAGACAACCGTCGTTTCTAACGAGAGATTCCTTTAGACAAGACA
ATGAGAATTTTCCAAGATTGCAAGATTCAAGATTCGCAAGATTTCATGAT
TTCCAAAAAGAAGAGCCAAACCCGAACCGCCCACTTCCGATCCCTTTGAA
AGACGCAGTCCGGTATGTCCGACAATACGGGCCACATGCGGACATGTTGC
GGGCAAAGGAAGAAAAAGTGATGAGCTACAAATTCTCAGATGCAGTGAAT
CACTTTAGGAATAAGAACAAACGATCTGAAGAACCAAAGTGTCAACGTCG
AACGGGTGACCCAAGTGAGTGgaataaaatacaaatcaaACTGGTCCCCA
GTTTTTTATTATTCACATCTGAAATTAGTAAATCCAAGTCTATCAGAATT
CTAATGTAATTATAGAACCACAATGTAAAATCTATTGTAAATTACGGGAT
AGTTGTCCGGGACAATTCATCCAGCAGGATCAACAATGTCCATAAGCTAA
CATTCATGGAAAACAATGTGTAATGTATATTTCATGTATTTGGCTATCCT
TCGTCTTTTAGAATGCAAACGAGACGTGAATGGTTGTGGATCTGGTTTCA
CTGAAGGAATCCCTTTCTTTTTTCGTGAAGCTTTTACACCATGCTGCAAC
AAGCACGACGTCTGCTATGATTGTGTAAGTTCAAAAccctcccgccgatt
tttttccgtaccGCCATAAcaccataccgccatattttcctgTAACGGAC
AATAACATTGTCTACCGTATGTCAAAAGGTTGAAGATTAAGAAATATATT
AACCTATGACGATTAAAATTAATTTAGGGCCCTGGGGACCATGTTTTAGA
GTGTATTATATGTGGCGAAAGCTTTGAATGCGGAAAAACAAAACATGGCG
GGTgccaaaacttgatttaagtCCTTAATGGCCCTTAATGCTATCTTTTA
TTTCTGGTATTTTTCTTGCAGGGTGTGACAGATTCTTGGACGCGAAAAGA
ATGCGATACAGCTTTTTACAACGATATGGTGGATGTTTGTGAGTGCGAAT
ATCCTAACTGGTCGCAATATGCACAATATCTGGCATGTCAGTTACGAGCA
TCTGAGTTATGGGCAGCTGTTAATGTCTTCGCTGGATCATTTTTCGGTAC
CAAAGAGAAGGCAGTGTGCAAACAACAATGTATCTTGCCCTATGGTAGTC
CCAAAATAAGCTTGTTGGAATAGTTCTGTCTTGCAATGAGCTTTAAAGAT
TTCTGCTCCTGGGTTGTGACAAGCTAATCGAAACGGATATAACTTTCTAG
TCATTTTTTTATGAGTTTATACtatttttttaaccctttgagtgccaggg
tccttttttctaagttttttttaaaaaatcgctagttcaaactttaaggg
cttatatctcctgatctaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057943-exon-scaffold_302-1491911889:390344..390478 | TCONS_00057943-exon-scaffold_302-1491911889:390344..390478 | Clytia hemisphaerica | exon |
| TCONS_00057943-exon-scaffold_302-1510915933:390344..390478 | TCONS_00057943-exon-scaffold_302-1510915933:390344..390478 | Clytia hemisphaerica | exon |
| TCONS_00057943-exon-scaffold_302-1575043694:390344..390478 | TCONS_00057943-exon-scaffold_302-1575043694:390344..390478 | Clytia hemisphaerica | exon |
| TCONS_00057943-exon-scaffold_302-1491911889:390587..391007 | TCONS_00057943-exon-scaffold_302-1491911889:390587..391007 | Clytia hemisphaerica | exon |
| TCONS_00057943-exon-scaffold_302-1510915933:390587..391007 | TCONS_00057943-exon-scaffold_302-1510915933:390587..391007 | Clytia hemisphaerica | exon |
| TCONS_00057943-exon-scaffold_302-1575043694:390587..391007 | TCONS_00057943-exon-scaffold_302-1575043694:390587..391007 | Clytia hemisphaerica | exon |
| TCONS_00057943-exon-scaffold_302-1491911889:391255..391367 | TCONS_00057943-exon-scaffold_302-1491911889:391255..391367 | Clytia hemisphaerica | exon |
| TCONS_00057943-exon-scaffold_302-1510915933:391255..391367 | TCONS_00057943-exon-scaffold_302-1510915933:391255..391367 | Clytia hemisphaerica | exon |
| TCONS_00057943-exon-scaffold_302-1575043694:391255..391367 | TCONS_00057943-exon-scaffold_302-1575043694:391255..391367 | Clytia hemisphaerica | exon |
| TCONS_00057943-exon-scaffold_302-1491911889:391665..392113 | TCONS_00057943-exon-scaffold_302-1491911889:391665..392113 | Clytia hemisphaerica | exon |
| TCONS_00057943-exon-scaffold_302-1510915933:391665..392113 | TCONS_00057943-exon-scaffold_302-1510915933:391665..392113 | Clytia hemisphaerica | exon |
| TCONS_00057943-exon-scaffold_302-1575043694:391665..392113 | TCONS_00057943-exon-scaffold_302-1575043694:391665..392113 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_302 | supercontig | scaffold_302:390344..392113 + |
Blast
The following BLAST results are available for this feature:
|
