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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057945 ID=TCONS_00057945|Name=TCONS_00057945|organism=Clytia hemisphaerica|type=transcript|length=1320bp CTTTATCTCTAGATAAGTAAAATGAATAATAGCCTTTTAATCAACTAATT ATGGAACGTCTACCGATATATCGGTGGTATTAATGTATGATTTATGCAGT TGGAACATCGACCAAGGTATCACAGGAGGTTAAAACAAGAGCTAGAAGTG ATGAACTCCTTGAAAACGATCCTACTTTTGTGTGTCGTCAATGCAGCATT TGGCCGTTATTACCATGACAACGTAAGATCACCACAAAGACAATATTATG AGCAGAGGGATAAGGACAAAAACCCTTTTGAAAGCAACATCCCTTTACCC TCTGACTttgatgatgacgtcacagaCCAGCTAAAACATGACGATCCACA CCATTACCGACCTTTACCACTCCCGATGAAAGATGCTATCCGATACGTGA GAAAATACGGACGGCACGCTGAATCGTTACGGAAGTTTGAAGACGAGTTG AGACGTTTACCTCGGTCACATGTCATGTTAGACCAACTCCGAAACGAGAA AAGATCACCGTTTAAATGTCAAACTCGACCAAAAGATAAAGcaTGCAAGC GAGACGTGAATGGTTGTGGATCTGGTTTCACTGCTTCTCTACCGCTTTTT TATCGTGAAGAATTTACACCATGCTGCAATAAACACGACGTTTGTTACGA TTGTggCGTCACACGTCATTGGACGAGAGAACAATGCGACAATAAATTTT ATGATGATATGGAAAACACATGTAGCTGTTTATACCCTAGTTGGTATCAA TACCCTGCCTACAAAACATGCAAATTGTGGGCTTCTACCTTATACGCTGT TGTTGATGTCTTCAGTGCAAGCTATTTTGGAACAAAGGTTAAAGATGTTT GTAAATCAAAATGCATTTTACCATACGGTAGTCCCCAGATCTCGTTATTA GGCTAATAGAATATTTTCATGATCCAATCCGTTGACTCTGGTCATTTTCC TGGTCAGAACTTACATTCAACTAGCGGACACTCCATTTATCGGacatatt tttttaatgaaatagtGAAGTTCCATTTTATCCTAGGGATAAATTTAGTC TGAACCgcaaacctctatagatatacttcctatataagaaactttttcgc tagaggatgagcagaagcctagggAAAATTGGTCTTTATAGtccaaattt tttcaacatttgcCTTGACCGCAAATCTTTCAATGTAGgataatttttgt ataaaaattttgtttcaatatcattttcaactactttttttgcttttatg tCCTTAGCTTGTTTAGCTGAAACGAATATTTGAATTTTGGCACACAGGCT TTTACTAAAATCTATCTCAT Run BLAST on NCBI protein sequence of TCONS_00057945-protein >TCONS_00057945-protein ID=TCONS_00057945-protein|Name=TCONS_00057945-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MQLEHRPRYHRRLKQELEVMNSLKTILLLCVVNAAFGRYYHDNVRSPQRQ YYEQRDKDKNPFESNIPLPSDFDDDVTDQLKHDDPHHYRPLPLPMKDAIR YVRKYGRHAESLRKFEDELRRLPRSHVMLDQLRNEKRSPFKCQTRPKDKA CKRDVNGCGSGFTASLPLFYREEFTPCCNKHDVCYDCGVTRHWTREQCDN KFYDDMENTCSCLYPSWYQYPAYKTCKLWASTLYAVVDVFSASYFGTKVK DVCKSKCILPYGSPQISLLG Run BLAST on NCBI transcript from alignment at scaffold_302:394043..397377+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057945 ID=TCONS_00057945|Name=TCONS_00057945|organism=Clytia hemisphaerica|type=transcript|length=3335bp|location=Sequence derived from alignment at scaffold_302:394043..397377+ (Clytia hemisphaerica) CTTTATCTCTAGATAAGTAAAATGAATAATAGCCTTTTAATCAACTAATT
ATGGAACGTCTACCGATATATCGGTGGTATTAATGTATGATTTATGCAGT
TGGAACATCGACCAAGGTATCACAGGAGGTTAAAACAAGAGCTAGAAGTG
ATGgtatgaaattttctttaaatgtcTTCTACCAACAAAGGACATAGCAA
ATAACTCAATATTTGGACAATCTAAGTAATTTTTAGGGTATCTTAATTAG
AGCGGGGAAAATTATCTTTTTGATTCAGTATTTGGATCAAAAAGCCATCT
AATCTATTGACATTTAAGACAAAGTATCTATACACGATTCTAGTGctatt
aatttttctaaaaatgtaccTAAACGGTTTCTCTCTATAACCTATTAATA
TTTTTCGATACATTCTATTTTTATTCGGCAATTTAAACTTTAGAACTCCT
TGAAAACGATCCTACTTTTGTGTGTCGTCAATGCAGCATTTGGCCGTTAT
TACCATGACAACGTAAGATCACCACAAAGACAATATTATGAGCAGAGGGA
TAAGGACAAAAACCCTTTTGAAAGGTAAGATATTATTCAATAGGCTGTTT
GCAAACTTGTAAATGAGAAATTCTTGTTACAAATTATCGAACATTGGCtt
caacttttcctaattataCCAAAGTACCTTCCTAACAACTTTTCACCGCA
GCTTTCATAGTGAAGTTGTCTTTGCTACAAATCTACAGTATGAAAACATC
TAGAATATCTTTAAGTCGAATCATTTGATTTAACCAAAGCAATTGCAGAA
TCAACCTTAATAAACTTCTCAAATCTATTTCTCAACTTCAGCAACATCCC
TTTACCCTCTGACTttgatgatgacgtcacagaCCAGCTAAAACATGACG
ATCCACACCATTACCGACCTTTACCACTCCCGATGAAAGATGCTATCCGA
TACGTGAGAAAATACGGACGGCACGCTGAATCGTTACGGAAGTTTGAAGA
CGAGTTGAGACGTTTACCTCGGTCACATGTCATGTTAGACCAACTCCGAA
ACGAGAAAAGATCACCGTTTAAATGTCAAACTCGACCAAAAGATAAAGGT
AGCATACGAGAATATTCAGGAAGAAAGATACAAGAGTGTACATGGAAAAG
AaaatatacacattttttataagcaaccaagtTGCTAAGGGTCCAGTTCT
GGCCAAAAACAGCCAAATAATTAAGCAACTCAGCCTTAGCAACCTAGTCC
TGAAACTGAGCATGAACCGGGAAAGCaactaaaaatctaaaaaagagGCA
TTTTTGGCATAATTTGGCATTAAAATGGGTAGCGATCTTATTTGAATACC
AAATTTGGGGTATTTTGAAcataaaatgagataaaaagtcaaaacttttg
aagttgCTAaacatttttggctcaaaatcaATAAGCaactttttggctga
aatccAGAATATCCGTAGCAACTCCAACCCTGAGCCAAAAATTGGGTTAC
TCATAAAACAATGTGTACAAGGTTATATTGGGGAAAGATAGAGGTGTAAA
GGCTAATACAGGTGTACATGGTAATATGTAATAGTGTGCATTTGAAAGAT
ACAAGTATACACAAAGAAAATAACAGGGCAGGAGGGAAATATACAAGGGG
TGTACATGGAAAATATAGCGAAGATATTCAAGAAAAAGATGCACGGCCGT
TTAGGGGTGTACATAGAAACACACGGGAAAGATATAGGGGTGTGCATGGG
AAATATACAGGGGCGTTCATGGAAAAGCTGCGAGGTAAAATTTAACACGT
CAAGGTACCATTTTTGATACTCCTAGAAAGACCTTAATTCACGTGTTGCG
TTATTGAAAAGGTGTAGAAATATCTTCCTATGGTTGTTTTGTAGTCCCAC
TTAGAGTTAGAGAAAGCGGTGAAATTCATTTAGCTACTGTATTGTTTGTT
ATCAGgggaaatatttcttttcttttagcaTGCAAGCGAGACGTGAATGG
TTGTGGATCTGGTTTCACTGCTTCTCTACCGCTTTTTTATCGTGAAGAAT
TTACACCATGCTGCAATAAACACGACGTTTGTTACGATTGTGTAAGTGTG
CTTAGAAACTTCGAAGAAGTACAATAATgacacctctgtctcacagccct
ggtaGGGCTTTTTCCtagaatggggataaaaatttcgattgaaattccaa
tagggatagaaattatattgtttccAAGATTAAgatatccagtggggatg
gttttggagtgcaatttttggcattgaatttcaaatggggataaaaacaa
agtcaatttccaagtgGTACCGAAATTGTAGAGTTATTTTGTCCGctggg
gacaaaattttggccaaattttccagtggggctgttAGTATggcaataat
ttttaaaatttttgtatttatcGAGGTCTGTTTACAGACAACAACAATAA
TAAATAAGTTAAAGCCCTTAAAACCTATTTTGACCGTGATTGGACCGTAC
GGGTAAATTGTTTTTAGAAGTATCGACTAAATAATTTTTAAGGATATCTA
CTTCTAGTGTGTTGCTAGGTAGCATTGCAACCACGACATACCTTCTGCTT
TCCGTTGAAACCATGAATGAGTTATTCATACTAGTAACATAAGATCaatg
tcaattttatttttcttagggCGTCACACGTCATTGGACGAGAGAACAAT
GCGACAATAAATTTTATGATGATATGGAAAACACATGTAGCTGTTTATAC
CCTAGTTGGTATCAATACCCTGCCTACAAAACATGCAAATTGTGGGCTTC
TACCTTATACGCTGTTGTTGATGTCTTCAGTGCAAGCTATTTTGGAACAA
AGGTTAAAGATGTTTGTAAATCAAAATGCATTTTACCATACGGTAGTCCC
CAGATCTCGTTATTAGGCTAATAGAATATTTTCATGATCCAATCCGTTGA
CTCTGGTCATTTTCCTGGTCAGAACTTACATTCAACTAGCGGACACTCCA
TTTATCGGacatatttttttaatgaaatagtGAAGTTCCATTTTATCCTA
GGGATAAATTTAGTCTGAACCgcaaacctctatagatatacttcctatat
aagaaactttttcgctagaggatgagcagaagcctagggAAAATTGGTCT
TTATAGtccaaattttttcaacatttgcCTTGACCGCAAATCTTTCAATG
TAGgataatttttgtataaaaattttgtttcaatatcattttcaactact
ttttttgcttttatgtCCTTAGCTTGTTTAGCTGAAACGAATATTTGAAT
TTTGGCACACAGGCTTTTACTAAAATCTATCTCAT Coding sequence (CDS) from alignment at scaffold_302:394043..397377+ >TCONS_00057945 ID=TCONS_00057945|Name=TCONS_00057945|organism=Clytia hemisphaerica|type=CDS|length=4065bp|location=Sequence derived from alignment at scaffold_302:394043..397377+ (Clytia hemisphaerica) ATGCAGTTGGAACATCGACCAAGGTATCACAGGAGGTTAAAACAAGAGCT AGAAGTGATGAACTCCTTGAAAACGATCCTACTTTTGTGTGTCGTCAATG CAGCATTTGGCCGTTATTACCATGACAACGTAAGATCACCACAAAGACAA TATTATGAGCAGAGGGATAAGGACAAAAACCCTTTTGAAAGCAACATCCC TTTACCCTCTGACTttgatgatgacgtcacagaCCAGCTAAAACATGACG ATCCACACCATTACCGACCTTTACCACTCCCGATGAAAGATGCTATCCGA TACGTGAGAAAATACGGACGGCACGCTGAATCGTTACGGAAGTTTGAAGA CGAGTTGAGACGTTTACCTCGGTCACATGTCATGTTAGACCAACTCCGAA ACGAGAAAAGATCACCGTTTAAATGTCAAACTCGACCAAAAGATAAAGca TGCAAGCGAGACGTGAATGGTTGTGGATCTGGTTTCACTGCTTCTCTACC GCTTTTTTATCGTGAAGAATTTACACCATGCTGCAATAAACACGACGTTT GTTACGATTGTggCGTCACACGTCATTGGACGAGAGAACAATGCGACAAT AAATTTTATGATGATATGGAAAACACATGTAGCTGTTTATACCCTAGTTG GTATCAATACCCTGCCTACAAAACATGCAAATTGTGGGCTTCTACCTTAT ACGCTGTTGTTGATGTCTTCAGTGCAAGCTATTTTGGAACAAAGGTTAAA GATGTTTGTAAATCAAAATGCATTTTACCATACGGTAGTCCCCAGATCTC GTTATTAGGCTAAATGCAGTTGGAACATCGACCAAGGTATCACAGGAGGT TAAAACAAGAGCTAGAAGTGATGAACTCCTTGAAAACGATCCTACTTTTG TGTGTCGTCAATGCAGCATTTGGCCGTTATTACCATGACAACGTAAGATC ACCACAAAGACAATATTATGAGCAGAGGGATAAGGACAAAAACCCTTTTG AAAGCAACATCCCTTTACCCTCTGACTttgatgatgacgtcacagaCCAG CTAAAACATGACGATCCACACCATTACCGACCTTTACCACTCCCGATGAA AGATGCTATCCGATACGTGAGAAAATACGGACGGCACGCTGAATCGTTAC GGAAGTTTGAAGACGAGTTGAGACGTTTACCTCGGTCACATGTCATGTTA GACCAACTCCGAAACGAGAAAAGATCACCGTTTAAATGTCAAACTCGACC AAAAGATAAAGcaTGCAAGCGAGACGTGAATGGTTGTGGATCTGGTTTCA CTGCTTCTCTACCGCTTTTTTATCGTGAAGAATTTACACCATGCTGCAAT AAACACGACGTTTGTTACGATTGTggCGTCACACGTCATTGGACGAGAGA ACAATGCGACAATAAATTTTATGATGATATGGAAAACACATGTAGCTGTT TATACCCTAGTTGGTATCAATACCCTGCCTACAAAACATGCAAATTGTGG GCTTCTACCTTATACGCTGTTGTTGATGTCTTCAGTGCAAGCTATTTTGG AACAAAGGTTAAAGATGTTTGTAAATCAAAATGCATTTTACCATACGGTA GTCCCCAGATCTCGTTATTAGGCTAAATGCAGTTGGAACATCGACCAAGG TATCACAGGAGGTTAAAACAAGAGCTAGAAGTGATGAACTCCTTGAAAAC GATCCTACTTTTGTGTGTCGTCAATGCAGCATTTGGCCGTTATTACCATG ACAACGTAAGATCACCACAAAGACAATATTATGAGCAGAGGGATAAGGAC AAAAACCCTTTTGAAAGCAACATCCCTTTACCCTCTGACTttgatgatga cgtcacagaCCAGCTAAAACATGACGATCCACACCATTACCGACCTTTAC CACTCCCGATGAAAGATGCTATCCGATACGTGAGAAAATACGGACGGCAC GCTGAATCGTTACGGAAGTTTGAAGACGAGTTGAGACGTTTACCTCGGTC ACATGTCATGTTAGACCAACTCCGAAACGAGAAAAGATCACCGTTTAAAT GTCAAACTCGACCAAAAGATAAAGcaTGCAAGCGAGACGTGAATGGTTGT GGATCTGGTTTCACTGCTTCTCTACCGCTTTTTTATCGTGAAGAATTTAC ACCATGCTGCAATAAACACGACGTTTGTTACGATTGTggCGTCACACGTC ATTGGACGAGAGAACAATGCGACAATAAATTTTATGATGATATGGAAAAC ACATGTAGCTGTTTATACCCTAGTTGGTATCAATACCCTGCCTACAAAAC ATGCAAATTGTGGGCTTCTACCTTATACGCTGTTGTTGATGTCTTCAGTG CAAGCTATTTTGGAACAAAGGTTAAAGATGTTTGTAAATCAAAATGCATT TTACCATACGGTAGTCCCCAGATCTCGTTATTAGGCTAAATGCAGTTGGA ACATCGACCAAGGTATCACAGGAGGTTAAAACAAGAGCTAGAAGTGATGA ACTCCTTGAAAACGATCCTACTTTTGTGTGTCGTCAATGCAGCATTTGGC CGTTATTACCATGACAACGTAAGATCACCACAAAGACAATATTATGAGCA GAGGGATAAGGACAAAAACCCTTTTGAAAGCAACATCCCTTTACCCTCTG ACTttgatgatgacgtcacagaCCAGCTAAAACATGACGATCCACACCAT TACCGACCTTTACCACTCCCGATGAAAGATGCTATCCGATACGTGAGAAA ATACGGACGGCACGCTGAATCGTTACGGAAGTTTGAAGACGAGTTGAGAC GTTTACCTCGGTCACATGTCATGTTAGACCAACTCCGAAACGAGAAAAGA TCACCGTTTAAATGTCAAACTCGACCAAAAGATAAAGcaTGCAAGCGAGA CGTGAATGGTTGTGGATCTGGTTTCACTGCTTCTCTACCGCTTTTTTATC GTGAAGAATTTACACCATGCTGCAATAAACACGACGTTTGTTACGATTGT ggCGTCACACGTCATTGGACGAGAGAACAATGCGACAATAAATTTTATGA TGATATGGAAAACACATGTAGCTGTTTATACCCTAGTTGGTATCAATACC CTGCCTACAAAACATGCAAATTGTGGGCTTCTACCTTATACGCTGTTGTT GATGTCTTCAGTGCAAGCTATTTTGGAACAAAGGTTAAAGATGTTTGTAA ATCAAAATGCATTTTACCATACGGTAGTCCCCAGATCTCGTTATTAGGCT AAATGCAGTTGGAACATCGACCAAGGTATCACAGGAGGTTAAAACAAGAG CTAGAAGTGATGAACTCCTTGAAAACGATCCTACTTTTGTGTGTCGTCAA TGCAGCATTTGGCCGTTATTACCATGACAACGTAAGATCACCACAAAGAC AATATTATGAGCAGAGGGATAAGGACAAAAACCCTTTTGAAAGCAACATC CCTTTACCCTCTGACTttgatgatgacgtcacagaCCAGCTAAAACATGA CGATCCACACCATTACCGACCTTTACCACTCCCGATGAAAGATGCTATCC GATACGTGAGAAAATACGGACGGCACGCTGAATCGTTACGGAAGTTTGAA GACGAGTTGAGACGTTTACCTCGGTCACATGTCATGTTAGACCAACTCCG AAACGAGAAAAGATCACCGTTTAAATGTCAAACTCGACCAAAAGATAAAG caTGCAAGCGAGACGTGAATGGTTGTGGATCTGGTTTCACTGCTTCTCTA CCGCTTTTTTATCGTGAAGAATTTACACCATGCTGCAATAAACACGACGT TTGTTACGATTGTggCGTCACACGTCATTGGACGAGAGAACAATGCGACA ATAAATTTTATGATGATATGGAAAACACATGTAGCTGTTTATACCCTAGT TGGTATCAATACCCTGCCTACAAAACATGCAAATTGTGGGCTTCTACCTT ATACGCTGTTGTTGATGTCTTCAGTGCAAGCTATTTTGGAACAAAGGTTA AAGATGTTTGTAAATCAAAATGCATTTTACCATACGGTAGTCCCCAGATC TCGTTATTAGGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057945-exon-scaffold_302-1491911889:394043..394195 | TCONS_00057945-exon-scaffold_302-1491911889:394043..394195 | Clytia hemisphaerica | exon |
TCONS_00057945-exon-scaffold_302-1510915933:394043..394195 | TCONS_00057945-exon-scaffold_302-1510915933:394043..394195 | Clytia hemisphaerica | exon |
TCONS_00057945-exon-scaffold_302-1575043694:394043..394195 | TCONS_00057945-exon-scaffold_302-1575043694:394043..394195 | Clytia hemisphaerica | exon |
TCONS_00057945-exon-scaffold_302-1491911889:394486..394616 | TCONS_00057945-exon-scaffold_302-1491911889:394486..394616 | Clytia hemisphaerica | exon |
TCONS_00057945-exon-scaffold_302-1510915933:394486..394616 | TCONS_00057945-exon-scaffold_302-1510915933:394486..394616 | Clytia hemisphaerica | exon |
TCONS_00057945-exon-scaffold_302-1575043694:394486..394616 | TCONS_00057945-exon-scaffold_302-1575043694:394486..394616 | Clytia hemisphaerica | exon |
TCONS_00057945-exon-scaffold_302-1491911889:394884..395140 | TCONS_00057945-exon-scaffold_302-1491911889:394884..395140 | Clytia hemisphaerica | exon |
TCONS_00057945-exon-scaffold_302-1510915933:394884..395140 | TCONS_00057945-exon-scaffold_302-1510915933:394884..395140 | Clytia hemisphaerica | exon |
TCONS_00057945-exon-scaffold_302-1575043694:394884..395140 | TCONS_00057945-exon-scaffold_302-1575043694:394884..395140 | Clytia hemisphaerica | exon |
TCONS_00057945-exon-scaffold_302-1491911889:396021..396133 | TCONS_00057945-exon-scaffold_302-1491911889:396021..396133 | Clytia hemisphaerica | exon |
TCONS_00057945-exon-scaffold_302-1510915933:396021..396133 | TCONS_00057945-exon-scaffold_302-1510915933:396021..396133 | Clytia hemisphaerica | exon |
TCONS_00057945-exon-scaffold_302-1575043694:396021..396133 | TCONS_00057945-exon-scaffold_302-1575043694:396021..396133 | Clytia hemisphaerica | exon |
TCONS_00057945-exon-scaffold_302-1491911889:396712..397377 | TCONS_00057945-exon-scaffold_302-1491911889:396712..397377 | Clytia hemisphaerica | exon |
TCONS_00057945-exon-scaffold_302-1510915933:396712..397377 | TCONS_00057945-exon-scaffold_302-1510915933:396712..397377 | Clytia hemisphaerica | exon |
TCONS_00057945-exon-scaffold_302-1575043694:396712..397377 | TCONS_00057945-exon-scaffold_302-1575043694:396712..397377 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_302 | supercontig | scaffold_302:394043..397377 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0004623 | phospholipase A2 activity |
Vocabulary: Biological Process
Term | Definition |
GO:0050482 | arachidonic acid secretion |
GO:0006644 | phospholipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0050482 |
arachidonic acid secretion |
biological_process |
GO:0006644 |
phospholipid metabolic process |
molecular_function |
GO:0004623 |
phospholipase A2 activity |
Blast
The following BLAST results are available for this feature:
|