TCONS_00057946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057946
Unique NameTCONS_00057946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2156

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057946 ID=TCONS_00057946|Name=TCONS_00057946|organism=Clytia hemisphaerica|type=transcript|length=2156bp
TNAACCCAAGGAAGAGGGTTGCACACAATGTGAATAATgGATACAATGGA
TCACCTTCACAATCATTTCAACCTATTCAAACTCCACTCCAACCAACTAT
GAAGCCACAACAACCTGCCATGAATCACGCAATGATGCCACAACAACCTG
CTATGAATCACGCAATGACGCCACAACAACCTGCTATGAATCACACGATG
ACACCACCCCAACTTCCTCAAGCACCAATGACACAGCCTACACCACCTGT
TATTAACCAGCAACCACCATCTCAACTAAACAGCTTTTCAACAATGTATA
ATCAACCACCACCTACACAAACAAATAGTCTGAATAATGGATTTCAAAAT
ATGTCTCTCGCACCACAAGAGAATACTCTGCATCATGCATCAAGTAACCC
TGATATTCACCAAGCAAACTATGTGTACCCAACACCGTCAGTGATGCACC
ATTCTTCCTCAGTTCCTGCTCACATCAATCAAGCTGGTCAAAATAGAATC
CCTGGTCATGCTTTTGGCAATCTGACTCCACCAGCAAACAATTCAAACAC
ACCACCTCTTGTTCAACCTAGATCAGGCTCTGCTACTCCACCTCAAGCGT
ACATCCATAATGATCAAGCTCAAACAAATGGACGGAAGATGAGCGCTCCA
ACTATGCCATTTATGAATTCTTCCATTTTCAGTCAGCACGGTACACCAAC
AATGCTGCAAGCATCACATAGAAGGACAGATAGTCCACATCCTCCATCGC
CAAACAGTATGCCAGTAAATACAACTCAACAACCATCCAGCCTTCCACCA
CGCATTTCACCAATGCCACCACAAACAGCAGTTCCAGAACATCTCGGTGC
GAATATTTACAATCGAAGTCAATCAAATCCAGAAGCTCATCGCCGCCCAT
CACCAGTTAGTTTGGCTCCTCCAACAAGTGGTTATTATTCGCACAGAAGT
GGTGGCAACTCTCCAAAATCCATGTCCCCAGGAAATAGTGGACACTGTTC
CCCTGTACCGACAGCAGATCCAAGTCTAATGGAGAATGATAATGAGTCAT
TAAGCAATACATTAAACTctttgaacaattttaaaagtcgATGCTCATGT
CAGCTAACTAACAAATTATCAGATGATATCGGTAAAAAGTTACAAACTTT
CGAAAATGCGTGGAGATCTGGGAAATTATCGAATGGCACCAAAAACAAAA
TGATCCAATTAGCACAAGCATTTAACAGTTCGAATATCCAAACAGCAGAT
AGACTTCATAAAAGACTCATCCAAGAACATTCGGGAGAGGTGACGTCTTG
GATTATAGGCATTAAGAAATTGATCACTGTTTTCCAAAGCATCCCTCAAT
AAAGACAAACGATGTGATCGCTTTGGTTGACAGGCTGGAACTGTTGTACG
CATGCGCATAAGACGAACATTCCGTTCAAAAAGAATATGATTTAGCTtca
aatatttattatttttcttgaaaattaaaatttttattttctgtttgaTA
TTATTAATTGAATTGTGAGGTACATTTGCTGATGATGTTGTAGCAATGGA
GATGGTTTTAAATTTCCccaaaagtatttcttttcctATGACGAGTCCCT
TTGAAATTGGACAAGTAAAATTCGAATGCTCGTGAAAGTTAGAAAAGTTT
CATATTAATTATGTCGATTCAAAACGGGGCCTTAccattcttttaaaatt
agagatgtttattttttggtattttatttttccttttttatgatCATTGT
AAATAGTAGCTCTGTCAGGCTCTGTGATTCTTTCCCCTCTAAAAGTTAAA
TCGCTAAAATTCGCAAAGTGTTTGCCAAATTGTATTACTCATTAGTCTCA
GTAAAAAATTAATGAACTGGGTTTAATTTCTCTAGTCTAGAGAAATTATA
GTGTGGCTCGttcaaataattttgaattAAGGATTAAGTTTATTTATTAG
ATTAgaactttttcataaaaaatttactAGTGAACCTTGGAATTTTATTA
ATGAATTATATTATAACTTGTTTGGGAAAAGATGAGATTCAatttaagat
aaaaatattttactttttgtgGCCCAAACTTCAACAAAGCTTCATTTAGC
GGTCAAACCTCTAAGATTTCAGCTTTTAAAATGGTGTGAATTATTAATGT
TTCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_302:43201..46128-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057946 ID=TCONS_00057946|Name=TCONS_00057946|organism=Clytia hemisphaerica|type=transcript|length=2928bp|location=Sequence derived from alignment at scaffold_302:43201..46128- (Clytia hemisphaerica)
TNAACCCAAGGAAGAGGGTTGCACACAATGTGAATAATGGTAAGAAAAAT
GTTCTTTTCGTTATTTCTTATTTACTAAAACAATGACTATGACTACCGGA
TGGGTTCCTTTAACCATTGAAAAAATTCTGAAACACAGGCTAATTGAAAA
ATATTGAATCCCATTTCTATCCCGTTAAAACAGGCTAATATTTAGCCTTC
TCAGCTGTGAAAATACTAGGAGGATAGGATGCAAATTGAATCGCATTTTC
ACTACGACCTAAACTTTTCATTTTGATTTTCTTGTTTTAGGATACAATGG
ATCACCTTCACAATCATTTCAACCTATTCAAACTCCACTCCAACCAACTA
TGAAGCCACAACAACCTGCCATGAATCACGCAATGATGCCACAACAACCT
GCTATGAATCACGCAATGACGCCACAACAACCTGCTATGAATCACACGAT
GACACCACCCCAACTTCCTCAAGCACCAATGACACAGCCTACACCACCTG
TTATTAACCAGCAACCACCATCTCAACTAAACAGCTTTTCAACAATGTAT
AATCAACCACCACCTACACAAACAAATAGTCTGAATAATGGATTTCAAAA
TATGTCTCTCGCACCACAAGAGAATACTCTGCATCATGCATCAAGTAACC
CTGATATTCACCAAGCAAACTATGTGTACCCAACACCGTCAGTGATGCAC
CATTCTTCCTCAGTTCCTGCTCACATCAATCAAGCTGGTCAAAATAGAAT
CCCTGGTCATGCTTTTGGCAATCTGACTCCACCAGCAAACAATTCAAACA
CACCACCTCTTGTTCAACCTAGATCAGGCTCTGCTACTCCACCTCAAGCG
TACATCCATAATGATCAAGCTCAAACAAATGGACGGAAGATGAGCGCTCC
AACTATGCCATTTATGAATTCTTCCATTTTCAGTCAGCACGGTACACCAA
CAATGCTGCAAGCATCACATAGAAGGACAGATAGTCCACATCCTCCATCG
CCAAACAGTATGCCAGTAAATACAACTCAACAACCATCCAGCCTTCCACC
ACGCATTTCACCAATGCCACCACAAACAGCAGTTCCAGAACATCTCGGTG
CGAATATTTACAATCGAAGTCAATCAAATCCAGAAGCTCATCGCCGCCCA
TCACCAGTTAGTTTGGCTCCTCCAACAAGTGGTTATTATTCGCACAGAAG
TGGTGGCAACTCTCCAAAATCCATGTCCCCAGGAAATAGTGGACACTGTT
CCCCTGTACCGACAGCAGATCCAAGTCTAATGGAGAATGATAATGAGTCA
TTAAGCAATACATTAAACTCTTTGAACAATTTTAAAAGTCGATGCTCATG
TCAGCTAACTAACAAATTATCAGATGATATCGGTAAAAAGTTACAAACTT
TCGAAAATGCGTGGAGATCTGGGAAATTATCGAATGGCACCAAAAACAAA
ATGATCCAATTAGCACAAGGTAAAGAAATAATTTATTTTTAAAATGATGA
AATACTTGACTATTTGTTCTATGGTGCGAGATGTGAGGGACAAAATTTTG
GGAAAAGACACCTGTCCTCGCCTCGCCTCGCCCTGTTTTCTTTTTTCAAT
TTTCCCAAATCGAATAAATTACAGTTCAAACTCTATCTCGTTATGAATGA
TAGAGCTTTCTAGCTCATCAATCAAATAAATAGCGTTCGTTCGTTATTAT
TATAACTAAGTTTTATAAATTTTATTCTCTACTTTCAGCATTTAACAGTT
CGAATATCCAAACAGCAGATAGACTTCATAAAAGACTCATCCAAGAACAT
TCGGGAGAGGTAAGTGTTTACGTTTTTTCGTTATGCAATTTAACTTTCAG
CACTTTTTCACATACTGGCTCCAAAAATAAATTCATATTGTGGAAAAGTG
TAAGCCAATTTTTTCTTCCTTTACAAATTTCTTGACTATGCGCTTACAAA
ACAATAAAAATGCTAGAATCAATCCGCCGGTACAATATTTTATGTTTTTT
GAAAATCAACTTTCAAAAGTTTGAAGTATTATTTAATCAATTTTCTCAAT
TCGTCTTTCAGGTGACGTCTTGGATTATAGGCATTAAGAAATTGATCACT
GTTTTCCAAAGCATCCCTCAATAAAGACAAACGATGTGATCGCTTTGGTT
GACAGGCTGGAACTGTTGTACGCATGCGCATAAGACGAACATTCCGTTCA
AAAAGAATATGATTTAGCTTCAAATATTTATTATTTTTCTTGAAAATTAA
AATTTTTATTTTCTGTTTGATATTATTAATTGAATTGTGAGGTACATTTG
CTGATGATGTTGTAGCAATGGAGATGGTTTTAAATTTCCCCAAAAGTATT
TCTTTTCCTATGACGAGTCCCTTTGAAATTGGACAAGTAAAATTCGAATG
CTCGTGAAAGTTAGAAAAGTTTCATATTAATTATGTCGATTCAAAACGGG
GCCTTACCATTCTTTTAAAATTAGAGATGTTTATTTTTTGGTATTTTATT
TTTCCTTTTTTATGATCATTGTAAATAGTAGCTCTGTCAGGCTCTGTGAT
TCTTTCCCCTCTAAAAGTTAAATCGCTAAAATTCGCAAAGTGTTTGCCAA
ATTGTATTACTCATTAGTCTCAGTAAAAAATTAATGAACTGGGTTTAATT
TCTCTAGTCTAGAGAAATTATAGTGTGGCTCGTTCAAATAATTTTGAATT
AAGGATTAAGTTTATTTATTAGATTAGAACTTTTTCATAAAAAATTTACT
AGTGAACCTTGGAATTTTATTAATGAATTATATTATAACTTGTTTGGGAA
AAGATGAGATTCAATTTAAGATAAAAATATTTTACTTTTTGTGGCCCAAA
CTTCAACAAAGCTTCATTTAGCGGTCAAACCTCTAAGATTTCAGCTTTTA
AAATGGTGTGAATTATTAATGTTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036534XLOC_036534Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057946-exon-scaffold_302-1575043694:46090..46128TCONS_00057946-exon-scaffold_302-1575043694:46090..46128Clytia hemisphaericaexon
TCONS_00057946-exon-scaffold_302-1575043694:44660..45838TCONS_00057946-exon-scaffold_302-1575043694:44660..45838Clytia hemisphaericaexon
TCONS_00057946-exon-scaffold_302-1575043694:44320..44390TCONS_00057946-exon-scaffold_302-1575043694:44320..44390Clytia hemisphaericaexon
TCONS_00057946-exon-scaffold_302-1575043694:43201..44067TCONS_00057946-exon-scaffold_302-1575043694:43201..44067Clytia hemisphaericaexon
TCONS_00057946-exon-scaffold_302-1510915933:46090..46128TCONS_00057946-exon-scaffold_302-1510915933:46090..46128Clytia hemisphaericaexon
TCONS_00057946-exon-scaffold_302-1510915933:44660..45838TCONS_00057946-exon-scaffold_302-1510915933:44660..45838Clytia hemisphaericaexon
TCONS_00057946-exon-scaffold_302-1510915933:44320..44390TCONS_00057946-exon-scaffold_302-1510915933:44320..44390Clytia hemisphaericaexon
TCONS_00057946-exon-scaffold_302-1510915933:43201..44067TCONS_00057946-exon-scaffold_302-1510915933:43201..44067Clytia hemisphaericaexon
TCONS_00057946-exon-scaffold_302-1491911889:46090..46128TCONS_00057946-exon-scaffold_302-1491911889:46090..46128Clytia hemisphaericaexon
TCONS_00057946-exon-scaffold_302-1491911889:44660..45838TCONS_00057946-exon-scaffold_302-1491911889:44660..45838Clytia hemisphaericaexon
TCONS_00057946-exon-scaffold_302-1491911889:44320..44390TCONS_00057946-exon-scaffold_302-1491911889:44320..44390Clytia hemisphaericaexon
TCONS_00057946-exon-scaffold_302-1491911889:43201..44067TCONS_00057946-exon-scaffold_302-1491911889:43201..44067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:43201..46128 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.88857	6.26774	0.380987	0.372722	9.96408e-08	0.140933	3.89037	7.44159	4.36799	14.3142	5.88972	6.79758	28.5314	20.0237	6.11301	10.8523	3.61457	8.14351	22.1533	37.0504	5.63437	6.75836	10.7472	11.9897	2.47818e-08	1.75342	43.3851	58.1039	43.2852	42.5309
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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