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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057947 ID=TCONS_00057947|Name=TCONS_00057947|organism=Clytia hemisphaerica|type=transcript|length=2342bp ATTAAATGTGAGGCAACATAAtcacagaattttttttctttctcgctGGA TTTTTCACAATGGCGGACGTAAATAGCGCTCCTCAAAATGGACCTGTGCT GTCATACACAGTTACCAATGACCGAGGATGGAACGACCCACCCAGCTTTG TCTTCAGCCCAAACACAACTGGAAATAGAAAACGAATTAACCTAAGGAAG AGGGTTGCACACAATGTGAATAATGGATACAATGGATCACCTTCACAATC ATTTCAACCTATTCAAACTCCACTCCAACCAACTATGAAGCCACAACAAC CTGCCATGAATCACGCAATGATGCCACAACAACCTGCTATGAATCACGCA ATGACGCCACAACAACCTGCTATGAATCACACGATGACACCACCCCAACT TCCTCAAGCACCAATGACACAGCCTACACCACCTGTTATTAACCAGCAAC CACCATCTCAACTAAACAGCTTTTCAACAATGTATAATCAACCACCACCT ACACAAACAAATAGTCTGAATAATGGATTTCAAAATATGTCTCTCGCACC ACAAGAGAATACTCTGCATCATGCATCAAGTAACCCTGATATTCACCAAG CAAACTATGTGTACCCAACACCGTCAGTGATGCACCATTCTTCCTCAGTT CCTGCTCACATCAATCAAGCTGGTCAAAATAGAATCCCTGGTCATGCTTT TGGCAATCTGACTCCACCAGCAAACAATTCAAACACACCACCTCTTGTTC AACCTAGATCAGGCTCTGCTACTCCACCTCAAGCGTACATCCATAATGAT CAAGCTCAAACAAATGGACGGAAGATGAGCGCTCCAACTATGCCATTTAT GAATTCTTCCATTTTCAGTCAGCACGGTACACCAACAATGCTGCAAGCAT CACATAGAAGGACAGATAGTCCACATCCTCCATCGCCAAACAGTATGCCA GTAAATACAACTCAACAACCATCCAGCCTTCCACCACGCATTTCACCAAT GCCACCACAAACAGCAGTTCCAGAACATCTCGGTGCGAATATTTACAATC GAAGTCAATCAAATCCAGAAGCTCATCGCCGCCCATCACCAGTTAGTTTG GCTCCTCCAACAAGTGGTTATTATTCGCACAGAAGTGGTGGCAACTCTCC AAAATCCATGTCCCCAGGAAATAGTGGACACTGTTCCCCTGTACCGACAG CAGATCCAAGTCTAATGGAGAATGATAATGAGTCATTAAGCAATACATTA AACTctttgaacaattttaaaagtcgATGCTCATGTCAGCTAACTAACAA ATTATCAGATGATATCGGTAAAAAGTTACAAACTTTCGAAAATGCGTGGA GATCTGGGAAATTATCGAATGGCACCAAAAACAAAATGATCCAATTAGCA CAAGCATTTAACAGTTCGAATATCCAAACAGCAGATAGACTTCATAAAAG ACTCATCCAAGAACATTCGGGAGAGGTGACGTCTTGGATTATAGGCATTA AGAAATTGATCACTGTTTTCCAAAGCATCCCTCAATAAAGACAAACGATG TGATCGCTTTGGTTGACAGGCTGGAACTGTTGTACGCATGCGCATAAGAC GAACATTCCGTTCAAAAAGAATATGATTTAGCTtcaaatatttattattt ttcttgaaaattaaaatttttattttctgtttgaTATTATTAATTGAATT GTGAGGTACATTTGCTGATGATGTTGTAGCAATGGAGATGGTTTTAAATT TCCccaaaagtatttcttttcctATGACGAGTCCCTTTGAAATTGGACAA GTAAAATTCGAATGCTCGTGAAAGTTAGAAAAGTTTCATATTAATTATGT CGATTCAAAACGGGGCCTTAccattcttttaaaattagagatgtttattt tttggtattttatttttccttttttatgatCATTGTAAATAGTAGCTCTG TCAGGCTCTGTGATTCTTTCCCCTCTAAAAGTTAAATCGCTAAAATTCGC AAAGTGTTTGCCAAATTGTATTACTCATTAGTCTCAGTAAAAAATTAATG AACTGGGTTTAATTTCTCTAGTCTAGAGAAATTATAGTGTGGCTCGttca aataattttgaattAAGGATTAAGTTTATTTATTAGATTAgaactttttc ataaaaaatttactAGTGAACCTTGGAATTTTATTAATGAATTATATTAT AACTTGTTTGGGAAAAGATGAGATTCAatttaagataaaaatattttact ttttgtgGCCCAAACTTCAACAAAGCTTCATTTAGCGGTCAAACCTCTAA GATTTCAGCTTTTAAAATGGTGTGAATTATTAATGTTTCAAG Run BLAST on NCBI transcript from alignment at scaffold_302:43201..50295- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057947 ID=TCONS_00057947|Name=TCONS_00057947|organism=Clytia hemisphaerica|type=transcript|length=7095bp|location=Sequence derived from alignment at scaffold_302:43201..50295- (Clytia hemisphaerica) ATTAAATGTGAGGCAACATAATCACAGAATTTTTTTTCTTTCTCGCTGGA
TTTTTCACAATGGCGGACGTAAATAGCGGTATGATTTTCTCAGATTTTTA
ATCATTTTTCACTATTTCATATTATAAAGAAGTCTTTGGCATCATTGTAA
GTGAAAGCTTTATCAAGGTTATAGTTTAGAGGAACAGAAATTTTAAATCA
AGAACCAGATTCTAAACTAAACTTTTTTCTTGTATACCAATTTTTATTAA
AAAAATAAACAACTAATTCTGTAGGTATTGACTATGATACCGATGAAAAA
ACAAGTATTGGGACGAAAATCTTTTCAGCCAATTTCTTTCTGATTTCGTC
CACAAACTCAACTGTAAGCATACAATTTCACTTGCTTTCACCTTCGCGTA
CAAATTCGCAACTTTACAAAAATACAGTTTTGAATTAGTTTTCATAAAAA
AACTATTTTTTCATTGGCCAGCGTGCTGCCATTTCCTTCGAAATGTTGCG
ACTTCATCGCTTCTTTTTAACTTTCGTTTTGATTAACAATATCAATGCGG
GTATGAAAACTCAATGTTGGTGCAATTAGACAAAAACTCAACGAAGACGG
GTGGGAAGGCAAGATCAACGCGATGGCGGACATAATTGGAAAAAATTGTG
TTTTCGAAGATGTAAAAATTGGTTTAGAAATTCTTGGCCGATAAGAGCAA
GGGGGGGGAGGGGTCTGAAGCTTATCAGCCCAATGCCGATAAAAAATTTG
AAAGTTTTTTTTGTCGAAGACTCCTTAGTCACACTAGCTATCCGCCAAAA
TGCGTATCAAAGATTAATGTTGTGAAAGCGCTGTATCGTTTACTTGACTC
TCAAGCAAAAAAATGTGCGGCAAAACTTCTAAAAGGATTCACGAAAAAAT
AAACCGGCACTTTTTAATGAAATTAACATTTTCAAAAACTTTGAGAAATT
GCCTAAATTTTGAGCCATAGATGAAAAAATTTGAGCCAAGCCAACCTTGA
AAACTAATTTGAAGCTGAACTTCTCAAGAAAAAGACCAACGGGGGAGGTG
GAACCCACCTAGATCCGCGCACTGCCGGATAGGCTATTTCCCGGAAATTT
TGCCGGACCTCAAACAATGACCCATTTGCATGTGCGGAATTATTTTTGCT
TTAGCGTATAAACATAGCCTTAATAATCGAAGCGCTGTCTCGGGAATTGA
ATGACAAAATTTGGTTGGTTGATATTCTGGCTGCTGCACATTCGCAATCT
GTCATTTTGTCTTATTTTAAGTTTTCACGTTTTAATTGATTGTCTTGGGA
TCTTGAACTTGATTCAGGTAACTCTCATCCTTGTTGTTGCAAATACATCC
TGTAGATGACTAATGTTGTTTTTTCTGAAAGCTTGATTTCCTAGTGTGAC
TAACTGCCTGGCACGCTAGCATATGTGCTACCGAGCCGCTGCAGCAATAC
CCGGAAATTTGAAAATATTTGTAAAAGACACTTCTATATATATACACCAT
AAGTTGGTCTAATGTGAACATCCCTCTTCTAATTTCGACATCCTTCTTTA
GAGAAAGGAATAATTGAAAGGTCGGAATCACTGATTGAAACTAATTTTCT
TTGCTTAGCACTTAGTTGAGGAGTCCAGTTTTGGGAGAATGCAACGGGCT
ATTGACTCAGTTCAGCATATAGTCGTTGTGGAAAACGCGACAGTCTTTTG
AATAACTTACTGTGAGATTGGGTAACTTGCATCCAGTGAATGACCTGGCT
CTGGTCATTAAAATACAAAGTTAAATCAAAACAAAAATGGTATACTAGAG
CTGCGAGCGGATCTGCGTAGCTCATTTGTTTTGAAATTTTGCTGCTTTGA
TTGGTCAGTCATTTGATGGCTATGCAAGTTTCCCTCCACTGATGCAAGTT
ACTTGACTTTCACGGTATACTCCAGCAGAAATTTTTATAATGATAATGTC
ATACCGTCAACTGCTCTAACTTGGGACTATCTGACAAATCATGGGACAGC
AATTTGGCCACCATTTCACCGAACCTCCAAAGTCATTTGATTTGAGTCAA
TGAACGGCGTATTAAAAAATACACAATTTCTCTTTCATACCGAGTAGGCT
TTTAAATTGAAATGTGAAAGTTGTTCCGTAGTGGAGCACACGCGAGTTAT
CGTGACATGTTATGACAGAAAGTATGATAAACTTGGTGGAGTTATCAAAA
TAAATTTGTTGTCAATGAGATTTAACGGTAAGTGAAAATACAGGCCAGAA
TATCAACAGTCCCATGTTTTGACCAACCGTCCCAAATTAGAGCAGTTGAT
GGTATAATTGATTTGTCTTAACACAGCTGTTACTAAGGTACAAGATAATC
TATCCTGTTTGTGCTGGCGTGCTGGCGTGCTGGCTGGAGTAATTTGTTTT
GCAATAGACCGTTGTGTTCTCCCAAATGACTACTAAATTACTCCACCAAT
TTTGGCCGGAAATTATCTGCTCTGTATTACAAAAATAAAACCCTTATACT
CGAGCTAATATTTTATAGAAGATTGCGCTGAGAATTGCAGTGTTTATCAT
ATGCTAATTTCAAATTTCGAATTTGGTAGAAAATCCTGGCCTGAACATTG
TGTGGGGCTAAAATGGCAGAAGAGTGGCCCAAAAAAGTTTGGGCTATACT
GTAGGTCATCCCTCAACATGATACCATGCCTAGCAAAAGGTCTATTAAAA
GACCATACGATACATCAGGGTTTTGATTGGGGCTAAATTTTCCTGTGTTT
TATTTTTTAAATTATTCCTACAACTCCAAGGCTTTGACTTTTAATAGGTA
GTTTCTCACCCGTAGATCATATCACAGTACTTTTCCATAAATATTTAAAT
TAAAAGACAACTTTTGTCTAATTTGAAGTCTGAAAATAAGAATTGATCTG
AAAAATTGGAAAGGGGTAGTTTTGGATCACTGTTCAAATCACTGATTTCT
AAGAATTTTTGTGGGAAATGTAAAGTAATATGCTTAATACTGATAGTTTT
GGGAATCAGCAAAACTTAATGTAAGAGTTTCTTGATCCGTATAAAACTAT
TGATCCCATATTTCTTACATAGTTTTCTTACTTTATTTAATTTCTGTAGA
AGACTGTATGTTGGAAGTATTGAGGATCTTTTTTTCTTTTTTATATTACT
AATCTATTTTCTAATGAATCTACATTGGCTTAGAATGTTTACTTTAGTTG
ATTTTATAATTTCTATAATAAGATCAATTTAAAGTTTTGCTCTTTTTCTC
TGTTTTATGTTTCTGAACAGCTATTTTAATTTGCAGATTTAAAACTAATT
CTTCATGATTACTTAACTATGGCACAATGTCATACTGGATATTCTTCTAC
ACAGAGCTAGAGTTTTTAATGGTTTTGGTGTGATTTTTTAATGTAGGAAG
CTGTTTTGGAAGTTTCGAATTTCATAAACCTCAAAATGATGAAAAGATAA
CAATATTTGCTTTCATTGAGCAAAGTGATGTATTTGTATGATGTATATGA
AATAGATTCGATTTCAAAAACGTCAAGAAAGTAGAGTCCTTAAAATATCT
TCCTGTTAAATAATTTGTGTTTTGATCAAGATTTTCTGAACTTTTCAATG
AATGTTTAAACATTCTAACCAATGATTACACTACACAAGAATTAGTTTCT
TAATTAGAATTGTTTGCAAACAGTTATGAGATAATTTTAGCATATTTATT
ATCCTCACTTAGTAACCAATGATGAAAAAAGAAAAATTCCATCAATATTT
TATGAATCTTTTATCAATGAATTTTCTTTCTTTTTTCCATGAAAACTTTA
TCAGTCAGATCATTTAGTAGATTTTTATCAGAGAAAGAAGACCTTCTTGT
TGAAATAATTTCACCTAGATGAAATTGGAGTCAGGTTAGAATAAACTTTT
ACCTTAATGAGTTGTACCTGGTTGTGCATATTTATATTATTTTGTGATAT
CGTTATAACACAAACATGACATATTTGTAATAAATCTCATTATTATTGCT
TTTATAGCTCCTCAAAATGGACCTGTGCTGTCATACACAGTTACCAATGA
CCGAGGATGGAACGACCCACCCAGCTTTGTCTTCAGCCCAAACACAACTG
GAAATAGAAAACGAATTAACCTAAGGAAGAGGGTTGCACACAATGTGAAT
AATGGTAAGAAAAATGTTNAACCCAAGGAAGAGGGTTGCACACAATGTGA
ATAATGGTAAGAAAAATGTTCTTTTCGTTATTTCTTATTTACTAAAACAA
TGACTATGACTACCGGATGGGTTCCTTTAACCATTGAAAAAATTCTGAAA
CACAGGCTAATTGAAAAATATTGAATCCCATTTCTATCCCGTTAAAACAG
GCTAATATTTAGCCTTCTCAGCTGTGAAAATACTAGGAGGATAGGATGCA
AATTGAATCGCATTTTCACTACGACCTAAACTTTTCATTTTGATTTTCTT
GTTTTAGGATACAATGGATCACCTTCACAATCATTTCAACCTATTCAAAC
TCCACTCCAACCAACTATGAAGCCACAACAACCTGCCATGAATCACGCAA
TGATGCCACAACAACCTGCTATGAATCACGCAATGACGCCACAACAACCT
GCTATGAATCACACGATGACACCACCCCAACTTCCTCAAGCACCAATGAC
ACAGCCTACACCACCTGTTATTAACCAGCAACCACCATCTCAACTAAACA
GCTTTTCAACAATGTATAATCAACCACCACCTACACAAACAAATAGTCTG
AATAATGGATTTCAAAATATGTCTCTCGCACCACAAGAGAATACTCTGCA
TCATGCATCAAGTAACCCTGATATTCACCAAGCAAACTATGTGTACCCAA
CACCGTCAGTGATGCACCATTCTTCCTCAGTTCCTGCTCACATCAATCAA
GCTGGTCAAAATAGAATCCCTGGTCATGCTTTTGGCAATCTGACTCCACC
AGCAAACAATTCAAACACACCACCTCTTGTTCAACCTAGATCAGGCTCTG
CTACTCCACCTCAAGCGTACATCCATAATGATCAAGCTCAAACAAATGGA
CGGAAGATGAGCGCTCCAACTATGCCATTTATGAATTCTTCCATTTTCAG
TCAGCACGGTACACCAACAATGCTGCAAGCATCACATAGAAGGACAGATA
GTCCACATCCTCCATCGCCAAACAGTATGCCAGTAAATACAACTCAACAA
CCATCCAGCCTTCCACCACGCATTTCACCAATGCCACCACAAACAGCAGT
TCCAGAACATCTCGGTGCGAATATTTACAATCGAAGTCAATCAAATCCAG
AAGCTCATCGCCGCCCATCACCAGTTAGTTTGGCTCCTCCAACAAGTGGT
TATTATTCGCACAGAAGTGGTGGCAACTCTCCAAAATCCATGTCCCCAGG
AAATAGTGGACACTGTTCCCCTGTACCGACAGCAGATCCAAGTCTAATGG
AGAATGATAATGAGTCATTAAGCAATACATTAAACTCTTTGAACAATTTT
AAAAGTCGATGCTCATGTCAGCTAACTAACAAATTATCAGATGATATCGG
TAAAAAGTTACAAACTTTCGAAAATGCGTGGAGATCTGGGAAATTATCGA
ATGGCACCAAAAACAAAATGATCCAATTAGCACAAGGTAAAGAAATAATT
TATTTTTAAAATGATGAAATACTTGACTATTTGTTCTATGGTGCGAGATG
TGAGGGACAAAATTTTGGGAAAAGACACCTGTCCTCGCCTCGCCTCGCCC
TGTTTTCTTTTTTCAATTTTCCCAAATCGAATAAATTACAGTTCAAACTC
TATCTCGTTATGAATGATAGAGCTTTCTAGCTCATCAATCAAATAAATAG
CGTTCGTTCGTTATTATTATAACTAAGTTTTATAAATTTTATTCTCTACT
TTCAGCATTTAACAGTTCGAATATCCAAACAGCAGATAGACTTCATAAAA
GACTCATCCAAGAACATTCGGGAGAGGTAAGTGTTTACGTTTTTTCGTTA
TGCAATTTAACTTTCAGCACTTTTTCACATACTGGCTCCAAAAATAAATT
CATATTGTGGAAAAGTGTAAGCCAATTTTTTCTTCCTTTACAAATTTCTT
GACTATGCGCTTACAAAACAATAAAAATGCTAGAATCAATCCGCCGGTAC
AATATTTTATGTTTTTTGAAAATCAACTTTCAAAAGTTTGAAGTATTATT
TAATCAATTTTCTCAATTCGTCTTTCAGGTGACGTCTTGGATTATAGGCA
TTAAGAAATTGATCACTGTTTTCCAAAGCATCCCTCAATAAAGACAAACG
ATGTGATCGCTTTGGTTGACAGGCTGGAACTGTTGTACGCATGCGCATAA
GACGAACATTCCGTTCAAAAAGAATATGATTTAGCTTCAAATATTTATTA
TTTTTCTTGAAAATTAAAATTTTTATTTTCTGTTTGATATTATTAATTGA
ATTGTGAGGTACATTTGCTGATGATGTTGTAGCAATGGAGATGGTTTTAA
ATTTCCCCAAAAGTATTTCTTTTCCTATGACGAGTCCCTTTGAAATTGGA
CAAGTAAAATTCGAATGCTCGTGAAAGTTAGAAAAGTTTCATATTAATTA
TGTCGATTCAAAACGGGGCCTTACCATTCTTTTAAAATTAGAGATGTTTA
TTTTTTGGTATTTTATTTTTCCTTTTTTATGATCATTGTAAATAGTAGCT
CTGTCAGGCTCTGTGATTCTTTCCCCTCTAAAAGTTAAATCGCTAAAATT
CGCAAAGTGTTTGCCAAATTGTATTACTCATTAGTCTCAGTAAAAAATTA
ATGAACTGGGTTTAATTTCTCTAGTCTAGAGAAATTATAGTGTGGCTCGT
TCAAATAATTTTGAATTAAGGATTAAGTTTATTTATTAGATTAGAACTTT
TTCATAAAAAATTTACTAGTGAACCTTGGAATTTTATTAATGAATTATAT
TATAACTTGTTTGGGAAAAGATGAGATTCAATTTAAGATAAAAATATTTT
ACTTTTTGTGGCCCAAACTTCAACAAAGCTTCATTTAGCGGTCAAACCTC
TAAGATTTCAGCTTTTAAAATGGTGTGAATTATTAATGTTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057947-exon-scaffold_302-1575043694:50218..50295 | TCONS_00057947-exon-scaffold_302-1575043694:50218..50295 | Clytia hemisphaerica | exon |
TCONS_00057947-exon-scaffold_302-1575043694:46142..46288 | TCONS_00057947-exon-scaffold_302-1575043694:46142..46288 | Clytia hemisphaerica | exon |
TCONS_00057947-exon-scaffold_302-1575043694:44660..45838 | TCONS_00057947-exon-scaffold_302-1575043694:44660..45838 | Clytia hemisphaerica | exon |
TCONS_00057947-exon-scaffold_302-1575043694:44320..44390 | TCONS_00057947-exon-scaffold_302-1575043694:44320..44390 | Clytia hemisphaerica | exon |
TCONS_00057947-exon-scaffold_302-1575043694:43201..44067 | TCONS_00057947-exon-scaffold_302-1575043694:43201..44067 | Clytia hemisphaerica | exon |
TCONS_00057947-exon-scaffold_302-1510915933:50218..50295 | TCONS_00057947-exon-scaffold_302-1510915933:50218..50295 | Clytia hemisphaerica | exon |
TCONS_00057947-exon-scaffold_302-1510915933:46142..46288 | TCONS_00057947-exon-scaffold_302-1510915933:46142..46288 | Clytia hemisphaerica | exon |
TCONS_00057947-exon-scaffold_302-1510915933:44660..45838 | TCONS_00057947-exon-scaffold_302-1510915933:44660..45838 | Clytia hemisphaerica | exon |
TCONS_00057947-exon-scaffold_302-1510915933:44320..44390 | TCONS_00057947-exon-scaffold_302-1510915933:44320..44390 | Clytia hemisphaerica | exon |
TCONS_00057947-exon-scaffold_302-1510915933:43201..44067 | TCONS_00057947-exon-scaffold_302-1510915933:43201..44067 | Clytia hemisphaerica | exon |
TCONS_00057947-exon-scaffold_302-1491911889:50218..50295 | TCONS_00057947-exon-scaffold_302-1491911889:50218..50295 | Clytia hemisphaerica | exon |
TCONS_00057947-exon-scaffold_302-1491911889:46142..46288 | TCONS_00057947-exon-scaffold_302-1491911889:46142..46288 | Clytia hemisphaerica | exon |
TCONS_00057947-exon-scaffold_302-1491911889:44660..45838 | TCONS_00057947-exon-scaffold_302-1491911889:44660..45838 | Clytia hemisphaerica | exon |
TCONS_00057947-exon-scaffold_302-1491911889:44320..44390 | TCONS_00057947-exon-scaffold_302-1491911889:44320..44390 | Clytia hemisphaerica | exon |
TCONS_00057947-exon-scaffold_302-1491911889:43201..44067 | TCONS_00057947-exon-scaffold_302-1491911889:43201..44067 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_302 | supercontig | scaffold_302:43201..50295 - |
Blast
The following BLAST results are available for this feature:
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