TCONS_00057947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057947
Unique NameTCONS_00057947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057947 ID=TCONS_00057947|Name=TCONS_00057947|organism=Clytia hemisphaerica|type=transcript|length=2342bp
ATTAAATGTGAGGCAACATAAtcacagaattttttttctttctcgctGGA
TTTTTCACAATGGCGGACGTAAATAGCGCTCCTCAAAATGGACCTGTGCT
GTCATACACAGTTACCAATGACCGAGGATGGAACGACCCACCCAGCTTTG
TCTTCAGCCCAAACACAACTGGAAATAGAAAACGAATTAACCTAAGGAAG
AGGGTTGCACACAATGTGAATAATGGATACAATGGATCACCTTCACAATC
ATTTCAACCTATTCAAACTCCACTCCAACCAACTATGAAGCCACAACAAC
CTGCCATGAATCACGCAATGATGCCACAACAACCTGCTATGAATCACGCA
ATGACGCCACAACAACCTGCTATGAATCACACGATGACACCACCCCAACT
TCCTCAAGCACCAATGACACAGCCTACACCACCTGTTATTAACCAGCAAC
CACCATCTCAACTAAACAGCTTTTCAACAATGTATAATCAACCACCACCT
ACACAAACAAATAGTCTGAATAATGGATTTCAAAATATGTCTCTCGCACC
ACAAGAGAATACTCTGCATCATGCATCAAGTAACCCTGATATTCACCAAG
CAAACTATGTGTACCCAACACCGTCAGTGATGCACCATTCTTCCTCAGTT
CCTGCTCACATCAATCAAGCTGGTCAAAATAGAATCCCTGGTCATGCTTT
TGGCAATCTGACTCCACCAGCAAACAATTCAAACACACCACCTCTTGTTC
AACCTAGATCAGGCTCTGCTACTCCACCTCAAGCGTACATCCATAATGAT
CAAGCTCAAACAAATGGACGGAAGATGAGCGCTCCAACTATGCCATTTAT
GAATTCTTCCATTTTCAGTCAGCACGGTACACCAACAATGCTGCAAGCAT
CACATAGAAGGACAGATAGTCCACATCCTCCATCGCCAAACAGTATGCCA
GTAAATACAACTCAACAACCATCCAGCCTTCCACCACGCATTTCACCAAT
GCCACCACAAACAGCAGTTCCAGAACATCTCGGTGCGAATATTTACAATC
GAAGTCAATCAAATCCAGAAGCTCATCGCCGCCCATCACCAGTTAGTTTG
GCTCCTCCAACAAGTGGTTATTATTCGCACAGAAGTGGTGGCAACTCTCC
AAAATCCATGTCCCCAGGAAATAGTGGACACTGTTCCCCTGTACCGACAG
CAGATCCAAGTCTAATGGAGAATGATAATGAGTCATTAAGCAATACATTA
AACTctttgaacaattttaaaagtcgATGCTCATGTCAGCTAACTAACAA
ATTATCAGATGATATCGGTAAAAAGTTACAAACTTTCGAAAATGCGTGGA
GATCTGGGAAATTATCGAATGGCACCAAAAACAAAATGATCCAATTAGCA
CAAGCATTTAACAGTTCGAATATCCAAACAGCAGATAGACTTCATAAAAG
ACTCATCCAAGAACATTCGGGAGAGGTGACGTCTTGGATTATAGGCATTA
AGAAATTGATCACTGTTTTCCAAAGCATCCCTCAATAAAGACAAACGATG
TGATCGCTTTGGTTGACAGGCTGGAACTGTTGTACGCATGCGCATAAGAC
GAACATTCCGTTCAAAAAGAATATGATTTAGCTtcaaatatttattattt
ttcttgaaaattaaaatttttattttctgtttgaTATTATTAATTGAATT
GTGAGGTACATTTGCTGATGATGTTGTAGCAATGGAGATGGTTTTAAATT
TCCccaaaagtatttcttttcctATGACGAGTCCCTTTGAAATTGGACAA
GTAAAATTCGAATGCTCGTGAAAGTTAGAAAAGTTTCATATTAATTATGT
CGATTCAAAACGGGGCCTTAccattcttttaaaattagagatgtttattt
tttggtattttatttttccttttttatgatCATTGTAAATAGTAGCTCTG
TCAGGCTCTGTGATTCTTTCCCCTCTAAAAGTTAAATCGCTAAAATTCGC
AAAGTGTTTGCCAAATTGTATTACTCATTAGTCTCAGTAAAAAATTAATG
AACTGGGTTTAATTTCTCTAGTCTAGAGAAATTATAGTGTGGCTCGttca
aataattttgaattAAGGATTAAGTTTATTTATTAGATTAgaactttttc
ataaaaaatttactAGTGAACCTTGGAATTTTATTAATGAATTATATTAT
AACTTGTTTGGGAAAAGATGAGATTCAatttaagataaaaatattttact
ttttgtgGCCCAAACTTCAACAAAGCTTCATTTAGCGGTCAAACCTCTAA
GATTTCAGCTTTTAAAATGGTGTGAATTATTAATGTTTCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_302:43201..50295-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057947 ID=TCONS_00057947|Name=TCONS_00057947|organism=Clytia hemisphaerica|type=transcript|length=7095bp|location=Sequence derived from alignment at scaffold_302:43201..50295- (Clytia hemisphaerica)
ATTAAATGTGAGGCAACATAATCACAGAATTTTTTTTCTTTCTCGCTGGA TTTTTCACAATGGCGGACGTAAATAGCGGTATGATTTTCTCAGATTTTTA ATCATTTTTCACTATTTCATATTATAAAGAAGTCTTTGGCATCATTGTAA GTGAAAGCTTTATCAAGGTTATAGTTTAGAGGAACAGAAATTTTAAATCA AGAACCAGATTCTAAACTAAACTTTTTTCTTGTATACCAATTTTTATTAA AAAAATAAACAACTAATTCTGTAGGTATTGACTATGATACCGATGAAAAA ACAAGTATTGGGACGAAAATCTTTTCAGCCAATTTCTTTCTGATTTCGTC CACAAACTCAACTGTAAGCATACAATTTCACTTGCTTTCACCTTCGCGTA CAAATTCGCAACTTTACAAAAATACAGTTTTGAATTAGTTTTCATAAAAA AACTATTTTTTCATTGGCCAGCGTGCTGCCATTTCCTTCGAAATGTTGCG ACTTCATCGCTTCTTTTTAACTTTCGTTTTGATTAACAATATCAATGCGG GTATGAAAACTCAATGTTGGTGCAATTAGACAAAAACTCAACGAAGACGG GTGGGAAGGCAAGATCAACGCGATGGCGGACATAATTGGAAAAAATTGTG TTTTCGAAGATGTAAAAATTGGTTTAGAAATTCTTGGCCGATAAGAGCAA GGGGGGGGAGGGGTCTGAAGCTTATCAGCCCAATGCCGATAAAAAATTTG AAAGTTTTTTTTGTCGAAGACTCCTTAGTCACACTAGCTATCCGCCAAAA TGCGTATCAAAGATTAATGTTGTGAAAGCGCTGTATCGTTTACTTGACTC TCAAGCAAAAAAATGTGCGGCAAAACTTCTAAAAGGATTCACGAAAAAAT AAACCGGCACTTTTTAATGAAATTAACATTTTCAAAAACTTTGAGAAATT GCCTAAATTTTGAGCCATAGATGAAAAAATTTGAGCCAAGCCAACCTTGA AAACTAATTTGAAGCTGAACTTCTCAAGAAAAAGACCAACGGGGGAGGTG GAACCCACCTAGATCCGCGCACTGCCGGATAGGCTATTTCCCGGAAATTT TGCCGGACCTCAAACAATGACCCATTTGCATGTGCGGAATTATTTTTGCT TTAGCGTATAAACATAGCCTTAATAATCGAAGCGCTGTCTCGGGAATTGA ATGACAAAATTTGGTTGGTTGATATTCTGGCTGCTGCACATTCGCAATCT GTCATTTTGTCTTATTTTAAGTTTTCACGTTTTAATTGATTGTCTTGGGA TCTTGAACTTGATTCAGGTAACTCTCATCCTTGTTGTTGCAAATACATCC TGTAGATGACTAATGTTGTTTTTTCTGAAAGCTTGATTTCCTAGTGTGAC TAACTGCCTGGCACGCTAGCATATGTGCTACCGAGCCGCTGCAGCAATAC CCGGAAATTTGAAAATATTTGTAAAAGACACTTCTATATATATACACCAT AAGTTGGTCTAATGTGAACATCCCTCTTCTAATTTCGACATCCTTCTTTA GAGAAAGGAATAATTGAAAGGTCGGAATCACTGATTGAAACTAATTTTCT TTGCTTAGCACTTAGTTGAGGAGTCCAGTTTTGGGAGAATGCAACGGGCT ATTGACTCAGTTCAGCATATAGTCGTTGTGGAAAACGCGACAGTCTTTTG AATAACTTACTGTGAGATTGGGTAACTTGCATCCAGTGAATGACCTGGCT CTGGTCATTAAAATACAAAGTTAAATCAAAACAAAAATGGTATACTAGAG CTGCGAGCGGATCTGCGTAGCTCATTTGTTTTGAAATTTTGCTGCTTTGA TTGGTCAGTCATTTGATGGCTATGCAAGTTTCCCTCCACTGATGCAAGTT ACTTGACTTTCACGGTATACTCCAGCAGAAATTTTTATAATGATAATGTC ATACCGTCAACTGCTCTAACTTGGGACTATCTGACAAATCATGGGACAGC AATTTGGCCACCATTTCACCGAACCTCCAAAGTCATTTGATTTGAGTCAA TGAACGGCGTATTAAAAAATACACAATTTCTCTTTCATACCGAGTAGGCT TTTAAATTGAAATGTGAAAGTTGTTCCGTAGTGGAGCACACGCGAGTTAT CGTGACATGTTATGACAGAAAGTATGATAAACTTGGTGGAGTTATCAAAA TAAATTTGTTGTCAATGAGATTTAACGGTAAGTGAAAATACAGGCCAGAA TATCAACAGTCCCATGTTTTGACCAACCGTCCCAAATTAGAGCAGTTGAT GGTATAATTGATTTGTCTTAACACAGCTGTTACTAAGGTACAAGATAATC TATCCTGTTTGTGCTGGCGTGCTGGCGTGCTGGCTGGAGTAATTTGTTTT GCAATAGACCGTTGTGTTCTCCCAAATGACTACTAAATTACTCCACCAAT TTTGGCCGGAAATTATCTGCTCTGTATTACAAAAATAAAACCCTTATACT CGAGCTAATATTTTATAGAAGATTGCGCTGAGAATTGCAGTGTTTATCAT ATGCTAATTTCAAATTTCGAATTTGGTAGAAAATCCTGGCCTGAACATTG TGTGGGGCTAAAATGGCAGAAGAGTGGCCCAAAAAAGTTTGGGCTATACT GTAGGTCATCCCTCAACATGATACCATGCCTAGCAAAAGGTCTATTAAAA GACCATACGATACATCAGGGTTTTGATTGGGGCTAAATTTTCCTGTGTTT TATTTTTTAAATTATTCCTACAACTCCAAGGCTTTGACTTTTAATAGGTA GTTTCTCACCCGTAGATCATATCACAGTACTTTTCCATAAATATTTAAAT TAAAAGACAACTTTTGTCTAATTTGAAGTCTGAAAATAAGAATTGATCTG AAAAATTGGAAAGGGGTAGTTTTGGATCACTGTTCAAATCACTGATTTCT AAGAATTTTTGTGGGAAATGTAAAGTAATATGCTTAATACTGATAGTTTT GGGAATCAGCAAAACTTAATGTAAGAGTTTCTTGATCCGTATAAAACTAT TGATCCCATATTTCTTACATAGTTTTCTTACTTTATTTAATTTCTGTAGA AGACTGTATGTTGGAAGTATTGAGGATCTTTTTTTCTTTTTTATATTACT AATCTATTTTCTAATGAATCTACATTGGCTTAGAATGTTTACTTTAGTTG ATTTTATAATTTCTATAATAAGATCAATTTAAAGTTTTGCTCTTTTTCTC TGTTTTATGTTTCTGAACAGCTATTTTAATTTGCAGATTTAAAACTAATT CTTCATGATTACTTAACTATGGCACAATGTCATACTGGATATTCTTCTAC ACAGAGCTAGAGTTTTTAATGGTTTTGGTGTGATTTTTTAATGTAGGAAG CTGTTTTGGAAGTTTCGAATTTCATAAACCTCAAAATGATGAAAAGATAA CAATATTTGCTTTCATTGAGCAAAGTGATGTATTTGTATGATGTATATGA AATAGATTCGATTTCAAAAACGTCAAGAAAGTAGAGTCCTTAAAATATCT TCCTGTTAAATAATTTGTGTTTTGATCAAGATTTTCTGAACTTTTCAATG AATGTTTAAACATTCTAACCAATGATTACACTACACAAGAATTAGTTTCT TAATTAGAATTGTTTGCAAACAGTTATGAGATAATTTTAGCATATTTATT ATCCTCACTTAGTAACCAATGATGAAAAAAGAAAAATTCCATCAATATTT TATGAATCTTTTATCAATGAATTTTCTTTCTTTTTTCCATGAAAACTTTA TCAGTCAGATCATTTAGTAGATTTTTATCAGAGAAAGAAGACCTTCTTGT TGAAATAATTTCACCTAGATGAAATTGGAGTCAGGTTAGAATAAACTTTT ACCTTAATGAGTTGTACCTGGTTGTGCATATTTATATTATTTTGTGATAT CGTTATAACACAAACATGACATATTTGTAATAAATCTCATTATTATTGCT TTTATAGCTCCTCAAAATGGACCTGTGCTGTCATACACAGTTACCAATGA CCGAGGATGGAACGACCCACCCAGCTTTGTCTTCAGCCCAAACACAACTG GAAATAGAAAACGAATTAACCTAAGGAAGAGGGTTGCACACAATGTGAAT AATGGTAAGAAAAATGTTNAACCCAAGGAAGAGGGTTGCACACAATGTGA ATAATGGTAAGAAAAATGTTCTTTTCGTTATTTCTTATTTACTAAAACAA TGACTATGACTACCGGATGGGTTCCTTTAACCATTGAAAAAATTCTGAAA CACAGGCTAATTGAAAAATATTGAATCCCATTTCTATCCCGTTAAAACAG GCTAATATTTAGCCTTCTCAGCTGTGAAAATACTAGGAGGATAGGATGCA AATTGAATCGCATTTTCACTACGACCTAAACTTTTCATTTTGATTTTCTT GTTTTAGGATACAATGGATCACCTTCACAATCATTTCAACCTATTCAAAC TCCACTCCAACCAACTATGAAGCCACAACAACCTGCCATGAATCACGCAA TGATGCCACAACAACCTGCTATGAATCACGCAATGACGCCACAACAACCT GCTATGAATCACACGATGACACCACCCCAACTTCCTCAAGCACCAATGAC ACAGCCTACACCACCTGTTATTAACCAGCAACCACCATCTCAACTAAACA GCTTTTCAACAATGTATAATCAACCACCACCTACACAAACAAATAGTCTG AATAATGGATTTCAAAATATGTCTCTCGCACCACAAGAGAATACTCTGCA TCATGCATCAAGTAACCCTGATATTCACCAAGCAAACTATGTGTACCCAA CACCGTCAGTGATGCACCATTCTTCCTCAGTTCCTGCTCACATCAATCAA GCTGGTCAAAATAGAATCCCTGGTCATGCTTTTGGCAATCTGACTCCACC AGCAAACAATTCAAACACACCACCTCTTGTTCAACCTAGATCAGGCTCTG CTACTCCACCTCAAGCGTACATCCATAATGATCAAGCTCAAACAAATGGA CGGAAGATGAGCGCTCCAACTATGCCATTTATGAATTCTTCCATTTTCAG TCAGCACGGTACACCAACAATGCTGCAAGCATCACATAGAAGGACAGATA GTCCACATCCTCCATCGCCAAACAGTATGCCAGTAAATACAACTCAACAA CCATCCAGCCTTCCACCACGCATTTCACCAATGCCACCACAAACAGCAGT TCCAGAACATCTCGGTGCGAATATTTACAATCGAAGTCAATCAAATCCAG AAGCTCATCGCCGCCCATCACCAGTTAGTTTGGCTCCTCCAACAAGTGGT TATTATTCGCACAGAAGTGGTGGCAACTCTCCAAAATCCATGTCCCCAGG AAATAGTGGACACTGTTCCCCTGTACCGACAGCAGATCCAAGTCTAATGG AGAATGATAATGAGTCATTAAGCAATACATTAAACTCTTTGAACAATTTT AAAAGTCGATGCTCATGTCAGCTAACTAACAAATTATCAGATGATATCGG TAAAAAGTTACAAACTTTCGAAAATGCGTGGAGATCTGGGAAATTATCGA ATGGCACCAAAAACAAAATGATCCAATTAGCACAAGGTAAAGAAATAATT TATTTTTAAAATGATGAAATACTTGACTATTTGTTCTATGGTGCGAGATG TGAGGGACAAAATTTTGGGAAAAGACACCTGTCCTCGCCTCGCCTCGCCC TGTTTTCTTTTTTCAATTTTCCCAAATCGAATAAATTACAGTTCAAACTC TATCTCGTTATGAATGATAGAGCTTTCTAGCTCATCAATCAAATAAATAG CGTTCGTTCGTTATTATTATAACTAAGTTTTATAAATTTTATTCTCTACT TTCAGCATTTAACAGTTCGAATATCCAAACAGCAGATAGACTTCATAAAA GACTCATCCAAGAACATTCGGGAGAGGTAAGTGTTTACGTTTTTTCGTTA TGCAATTTAACTTTCAGCACTTTTTCACATACTGGCTCCAAAAATAAATT CATATTGTGGAAAAGTGTAAGCCAATTTTTTCTTCCTTTACAAATTTCTT GACTATGCGCTTACAAAACAATAAAAATGCTAGAATCAATCCGCCGGTAC AATATTTTATGTTTTTTGAAAATCAACTTTCAAAAGTTTGAAGTATTATT TAATCAATTTTCTCAATTCGTCTTTCAGGTGACGTCTTGGATTATAGGCA TTAAGAAATTGATCACTGTTTTCCAAAGCATCCCTCAATAAAGACAAACG ATGTGATCGCTTTGGTTGACAGGCTGGAACTGTTGTACGCATGCGCATAA GACGAACATTCCGTTCAAAAAGAATATGATTTAGCTTCAAATATTTATTA TTTTTCTTGAAAATTAAAATTTTTATTTTCTGTTTGATATTATTAATTGA ATTGTGAGGTACATTTGCTGATGATGTTGTAGCAATGGAGATGGTTTTAA ATTTCCCCAAAAGTATTTCTTTTCCTATGACGAGTCCCTTTGAAATTGGA CAAGTAAAATTCGAATGCTCGTGAAAGTTAGAAAAGTTTCATATTAATTA TGTCGATTCAAAACGGGGCCTTACCATTCTTTTAAAATTAGAGATGTTTA TTTTTTGGTATTTTATTTTTCCTTTTTTATGATCATTGTAAATAGTAGCT CTGTCAGGCTCTGTGATTCTTTCCCCTCTAAAAGTTAAATCGCTAAAATT CGCAAAGTGTTTGCCAAATTGTATTACTCATTAGTCTCAGTAAAAAATTA ATGAACTGGGTTTAATTTCTCTAGTCTAGAGAAATTATAGTGTGGCTCGT TCAAATAATTTTGAATTAAGGATTAAGTTTATTTATTAGATTAGAACTTT TTCATAAAAAATTTACTAGTGAACCTTGGAATTTTATTAATGAATTATAT TATAACTTGTTTGGGAAAAGATGAGATTCAATTTAAGATAAAAATATTTT ACTTTTTGTGGCCCAAACTTCAACAAAGCTTCATTTAGCGGTCAAACCTC TAAGATTTCAGCTTTTAAAATGGTGTGAATTATTAATGTTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036534XLOC_036534Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057947-exon-scaffold_302-1575043694:50218..50295TCONS_00057947-exon-scaffold_302-1575043694:50218..50295Clytia hemisphaericaexon
TCONS_00057947-exon-scaffold_302-1575043694:46142..46288TCONS_00057947-exon-scaffold_302-1575043694:46142..46288Clytia hemisphaericaexon
TCONS_00057947-exon-scaffold_302-1575043694:44660..45838TCONS_00057947-exon-scaffold_302-1575043694:44660..45838Clytia hemisphaericaexon
TCONS_00057947-exon-scaffold_302-1575043694:44320..44390TCONS_00057947-exon-scaffold_302-1575043694:44320..44390Clytia hemisphaericaexon
TCONS_00057947-exon-scaffold_302-1575043694:43201..44067TCONS_00057947-exon-scaffold_302-1575043694:43201..44067Clytia hemisphaericaexon
TCONS_00057947-exon-scaffold_302-1510915933:50218..50295TCONS_00057947-exon-scaffold_302-1510915933:50218..50295Clytia hemisphaericaexon
TCONS_00057947-exon-scaffold_302-1510915933:46142..46288TCONS_00057947-exon-scaffold_302-1510915933:46142..46288Clytia hemisphaericaexon
TCONS_00057947-exon-scaffold_302-1510915933:44660..45838TCONS_00057947-exon-scaffold_302-1510915933:44660..45838Clytia hemisphaericaexon
TCONS_00057947-exon-scaffold_302-1510915933:44320..44390TCONS_00057947-exon-scaffold_302-1510915933:44320..44390Clytia hemisphaericaexon
TCONS_00057947-exon-scaffold_302-1510915933:43201..44067TCONS_00057947-exon-scaffold_302-1510915933:43201..44067Clytia hemisphaericaexon
TCONS_00057947-exon-scaffold_302-1491911889:50218..50295TCONS_00057947-exon-scaffold_302-1491911889:50218..50295Clytia hemisphaericaexon
TCONS_00057947-exon-scaffold_302-1491911889:46142..46288TCONS_00057947-exon-scaffold_302-1491911889:46142..46288Clytia hemisphaericaexon
TCONS_00057947-exon-scaffold_302-1491911889:44660..45838TCONS_00057947-exon-scaffold_302-1491911889:44660..45838Clytia hemisphaericaexon
TCONS_00057947-exon-scaffold_302-1491911889:44320..44390TCONS_00057947-exon-scaffold_302-1491911889:44320..44390Clytia hemisphaericaexon
TCONS_00057947-exon-scaffold_302-1491911889:43201..44067TCONS_00057947-exon-scaffold_302-1491911889:43201..44067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:43201..50295 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.3941 10.635 0.659427 0.216335 5.6224 6.83879 19.3561 21.8039 5.61894 13.6624 9.06648 4.75407 18.2449 14.4477 4.71775 8.79592 3.56348 5.29304 13.4981 13.0492 5.63635 4.4038 9.9692 9.83802 19.3207 19.0427 37.9862 36.5538 40.2498 42.3311
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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