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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057949 ID=TCONS_00057949|Name=TCONS_00057949|organism=Clytia hemisphaerica|type=transcript|length=4246bpRun BLAST on NCBI protein sequence of TCONS_00057949-protein >TCONS_00057949-protein ID=TCONS_00057949-protein|Name=TCONS_00057949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=489bp MLMSPQNGPVLSYTVTNDRGWNDPPSFVFSPNTTGNRKRINLRKRVAHNVRun BLAST on NCBI transcript from alignment at scaffold_302:43201..70980- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057949 ID=TCONS_00057949|Name=TCONS_00057949|organism=Clytia hemisphaerica|type=transcript|length=27780bp|location=Sequence derived from alignment at scaffold_302:43201..70980- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_302:43201..70980- >TCONS_00057949 ID=TCONS_00057949|Name=TCONS_00057949|organism=Clytia hemisphaerica|type=CDS|length=7350bp|location=Sequence derived from alignment at scaffold_302:43201..70980- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00057949 vs. Swiss-Prot (Human)
Match: MAPK2 (MAP kinase-activated protein kinase 2 OS=Homo sapiens GN=MAPKAPK2 PE=1 SV=1) HSP 1 Score: 447.588 bits (1150), Expect = 1.386e-143 Identity = 216/358 (60.34%), Postives = 266/358 (74.30%), Query Frame = 1
Query: 295 LTSKRHAITQDYDVSQKSLGVGINGKVLECYRKKDKGKFALKVLKDSVKARRELDLHWKACECPYVVKIVDVYENRFGKDDCLLVVMECMEGGELFERIQNRADHPFTEREAAATVRMISMAIIHLHTMNIAHRDLKPENLLYVEKSNASLLKLTDFGFAKETVSVSLQTPCYXTDFGFAKETVS-VSLQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVITYILLCGYPPFYSNHGAAISPGMKRRIRQGQYSFPDSEWKNVSQGAKDLIRNLLKTEPSQRYNIQQVMNHSWIKSYTEVPQTPLHTAAIMAEDTEMLTEAQDEMTLALQAMRVPFEDQIRLKEINISSNPLLNRRKK 1365
L K++AI DY V+ + LG+GINGKVL+ + K+ + KFALK+L+D KARRE++LHW+A +CP++V+IVDVYEN + CLL+VMEC++GGELF RIQ+R D FTEREA+ ++ I AI +LH++NIAHRD+KPENLLY K ++LKLTDFGF AKET S SL TPCYTPYYVAPEVLGPEKYDKSCDMWSLGVI YILLCGYPPFYSNHG AISPGMK RIR GQY FP+ EW VS+ K LIRNLLKTEP+QR I + MNH WI T+VPQTPLHT+ ++ ED E + ++EMT AL MRV +E QI++K+I +SNPLL +R+K
Sbjct: 52 LQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGF--------------------AKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTSRVLKEDKERWEDVKEEMTSALATMRVDYE-QIKIKKIEDASNPLLLKRRK 388 The following BLAST results are available for this feature:
BLAST of TCONS_00057949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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