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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057961 ID=TCONS_00057961|Name=TCONS_00057961|organism=Clytia hemisphaerica|type=transcript|length=3146bpRun BLAST on NCBI protein sequence of TCONS_00057961-protein >TCONS_00057961-protein ID=TCONS_00057961-protein|Name=TCONS_00057961-protein|organism=Clytia hemisphaerica|type=polypeptide|length=763bp VAGDSLELEDIIGQGQFGDVYKGMYTSPKTKTTTSVAIKTYREDREKENERun BLAST on NCBI transcript from alignment at scaffold_302:111082..135048- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057961 ID=TCONS_00057961|Name=TCONS_00057961|organism=Clytia hemisphaerica|type=transcript|length=23967bp|location=Sequence derived from alignment at scaffold_302:111082..135048- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_302:111082..135048- >TCONS_00057961 ID=TCONS_00057961|Name=TCONS_00057961|organism=Clytia hemisphaerica|type=CDS|length=38964bp|location=Sequence derived from alignment at scaffold_302:111082..135048- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057961 vs. Swiss-Prot (Human)
Match: FAK1 (Focal adhesion kinase 1 OS=Homo sapiens GN=PTK2 PE=1 SV=2) HSP 1 Score: 377.481 bits (968), Expect = 9.302e-113 Identity = 182/306 (59.48%), Postives = 228/306 (74.51%), Query Frame = 3
Query: 18 LELEDIIGQGQFGDVYKGMYTSPKTKTTTSVAIKTYREDREKENEDATRSEKFLEEAYLMKQFDHPHIIKLIGIVSSNPIRIIMELAPHGELRSYLQHYRLQTDIEKLVTYIFQLCTALSYLESRNFVHRDVAARNILVSDINTIKLGDFGLSRSIEDHHSYYKASKGKLPIKWMAPESINFRRFSSASDVWMFGVCCWEILMYGVKPFQGVPNEKVIGKIENGERLPLPQTCPINLYHIMTDAWNYEPSKRPTFQELKTKLGSIVHEERFSGQQKKKKHDERRAKLP----GQDESLAPPKPSRP 923
+EL IG+GQFGDV++G+Y SP+ +VAIKT + D+ R EKFL+EA M+QFDHPHI+KLIG+++ NP+ IIMEL GELRS+LQ + D+ L+ Y +QL TAL+YLES+ FVHRD+AARN+LVS + +KLGDFGLSR +ED +YYKASKGKLPIKWMAPESINFRRF+SASDVWMFGVC WEILM+GVKPFQGV N VIG+IENGERLP+P CP LY +MT W Y+PS+RP F ELK +L +I+ EE+ +++ + R+A + G DE APPKPSRP
Sbjct: 422 IELGRCIGEGQFGDVHQGIYMSPENPAL-AVAIKTCKNC----TSDSVR-EKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS-TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKAQQEERMRMESRRQATVSWDSGGSDE--APPKPSRP 718 HSP 2 Score: 106.686 bits (265), Expect = 3.358e-23 Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 3
Query: 1890 ANDIVYQHTTSVVKSVIEFNTGVQHAQPEEFVDLVKVVGLNLRDLLAEVDNGVQNIPESAQKEIEMAHKVLSSDMAELVAKMKLAQKYAETTLGQENKR 2186
+ND VY++ T +VK+VIE ++ +Q A PEE+V +VK VGL LR LLA VD + +P S +EIEMA K+L+SD+ EL+ KMKLAQ+Y T+L QE K+
Sbjct: 920 SNDKVYENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKMKLAQQYVMTSLQQEYKK 1018 The following BLAST results are available for this feature:
BLAST of TCONS_00057961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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