TCONS_00057964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057964
Unique NameTCONS_00057964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057964 ID=TCONS_00057964|Name=TCONS_00057964|organism=Clytia hemisphaerica|type=transcript|length=602bp
tttagatttcgagaaaattagttttaaagagagaaacttttttgtggcgc
acccggtatatcaACCATTTTTTTACAGATTACCCACATGGCGAACTTCA
ACCAAATCCAGTCTATTTATACTTCAAAGATGGGTTCAGTTGCAGGAAAA
GCTACACTCAATATTAAAGTTGAAGGTAGTACTGAGCCTTTGATATTTAC
AGTGGATAATGTGAATAAAGCAACAGAGCTTGCAGATCTTATCGATGGTT
ATTGTATGCTTCTTAATATGCAACAACCACAAACTCTGATCACCAAAAGA
GCAGATAGTTACAGGACACTGCCGTCGATACCTGCAAGAccGACGACAGA
TTCAAGTTCTGTCAGTATCATCAACCATAGAGCCTCTGGTGGCTCCGCAC
TATACAATTCTTTCAACAATTCAAATGCTGACTATGCAGAAATTCCCGAT
GACGATGAGGATGCTGATTATGCACATCCTATGGCAGGTATGGAAACGTT
TTCTTTAAAAAGGATTTCTTGAAGTGTTTCTTCTACTAAGCACTGTTGAT
TAATCGAGAACTTTGTGCAAATTAGTAGTCTACTTTTCAATCCAACGATT
AG
Run BLAST on NCBI

protein sequence of TCONS_00057964-protein

>TCONS_00057964-protein ID=TCONS_00057964-protein|Name=TCONS_00057964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MANFNQIQSIYTSKMGSVAGKATLNIKVEGSTEPLIFTVDNVNKATELAD
LIDGYCMLLNMQQPQTLITKRADSYRTLPSIPARPTTDSSSVSIINHRAS
GGSALYNSFNNSNADYAEIPDDDEDADYAHPMAGMETFSLKRIS
Run BLAST on NCBI

transcript from alignment at scaffold_302:135257..137797-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057964 ID=TCONS_00057964|Name=TCONS_00057964|organism=Clytia hemisphaerica|type=transcript|length=2541bp|location=Sequence derived from alignment at scaffold_302:135257..137797- (Clytia hemisphaerica)
TTTAGATTTCGAGAAAATTAGTTTTAAAGAGAGAAACTTTTTTGTGGCGC
ACCCGGTATATCAACCATTTTTTTACAGATTACCCACATGGCGAACTTCA
ACCAAATCCAGTCTATTTATACTTCAAAGATGGGTTCAGTTGCAGGAAAA
GCTACACTCAATATTAAAGTTGAAGGTAGTACTGAGGTATGTTCCAAATT
TTAGCAGCAATTACTGTTACAATTCCGAATTTACCATTGATTTCAGTGAA
AAAGTATGCTTTGATACTGTTAAAACATAGTGTGACATTTCCCTTGGCTT
TTTAGAACCATTGGTTACATTTTAGGAGTTTTACACTAAGTTCTATTCAA
TGCTAGGTTATTATCAAACTTCCAGAATCAGATCTTCCTGAATTTCTCTT
CTTTTCTTCCTTAGCCTTTGATATTTACAGTGGATAATGTGAATAAAGCA
ACAGAGCTTGCAGATCTTATCGATGGTTATTGTATGCTTCTTAATATGCA
ACAACCACAAACTCTGATCACCAAAAGAGCAGGTACGTGTCTACAATTGG
TGCCAAAATATCTGGCACAAAAGGGGAGTTCCGGTAAGTATGGTTAGAAA
GTAGAGTTTTCACATTACATAGGATCTCAGGATCTAAAAGCTCAAAAATA
TTCCAATATGGCTGAGAACATAGCTTGGAAGCCACTTAACCCCTCCCAAA
TCGAAAAATCCCCTGAAACAAAGTGGAAGTACTGAAATTGTAATTCTTGC
CTGAGCTTTGAATTCTGAAAAACGTTAAAATACCCGAAATGGCCAATATA
TTTTGGCACTGATTGTATTTGCTTTCACTCCACTGACGAATACAACATGG
ATTCTCTATCCTTCATAATTACTTTATTACTTTTCACTTTTGGTCAATAT
GTTTATTTTTGATTTGTTCATGCAAATCGGTATTTGTTTTTTCCACTTTT
AGATAGTTACAGGACACTGCCGTCGATACCTGCAAGACCGTAAGATTTTT
TTTCTCATAATTATAATTTAAGGTAGGACCAATGTGATTTATTTTATGAA
CTAATTTTTTAAGAATAAAAAGTTATTGAAAAGTACTCTTTATCATCGAT
GTTGCGAATTCAGGATAGTCCTTATCCCTATGTCAAGGACCATTAGATAA
TCACATTGGCATTTTTTAGCTACTTTCTTCACATTTCAGGACGACAGATT
CAAGTTCTGTCAGTATCATCAACCATAGAGCCTCTGGTGGCTCCGCACTA
TACAATTCTTTCAACAATTCAAGTAAGTTAATATTTTTTTGTGGACTCCA
AACTATTCTTCTTTTGATTTAGTTTAGTATTTTCTAAAGAATTTTAAGCA
TGAATATAATGTGTAAGAAAAAACAAAATTTGAATTATGATACATACATC
TTCTCTTTTTCTTGCACATATTATAAAGCTCTGTCTTGGTCATCGAGCAT
TCTTTGGTGGAATCATCTACTACTATTGAGCATGATTATAAAAACTCCCT
GAGATTAACTAAGTGTTAATGGATCACTTGCAAAACTTTTCATGATGTCA
ATGTTTCGATTAAGTTTTAATTATTGACAGATAAATTCATGTAAATTGAA
TGTAAATTCAACCATATCAGTCAAAATAATTTGAAACTGCTTTCCGACTT
TTCCTCAACGAGGAATTTTTGTTGAACAAAACAAACAAAAAACACGTCAT
CGTTGAAACGACACAAACGATAAACCAACACTTCCAAGACAACAATATGT
TGTTTAATTTTTTATGTTTACAATTTTGTCCTGTCTTCTGTTTCATATTA
AGGTGAAAAAGATCGTTTCTTATTAATCATTTTCCTTTTATAATGAAGGA
AAGGCCTGTGTTTTGTTGTTATAGGTTTTATGAATTTTTAAATTTCTTCA
TTCTATTTTTCCTATGATTTTTTTAGAAATGAGGATCCATACAGAGAAAT
AATCTCAATTTCGCTTTTCCTATATTTTTATTATTTCTCTTTTCTCTTCT
TTTTCAATTTTGATGTTCTTCTTCACCCTTCATTCAAGAATCTTGTAAGA
CTTTAAGAAAAAAAATCGAAGAAATAATAATTTGATTTAATGTTTAGTCG
AGATTATATGTGTGTGGAGAGAGTTGAAAAGAAATGGGAATGACATTTTT
GGTTTGCGAGTAACCATCATAAACATTAAAGAGAAAAATGAGAAAAAAGG
AGGAACATAACAAAACACAAGAAATTTCTATCAAAAGTGAAAGTGTAAGA
GAGTGAGTGAAAGATTGCAGATGATTGTGGTTGTATGATCAAATGAAAAA
TGATGTTAATGAATGGTGGTGAGGTAACCGTACGAAGTGTTTTATGTTCT
TATTCATCTACAGATGCTGACTATGCAGAAATTCCCGATGACGATGAGGA
TGCTGATTATGCACATCCTATGGCAGGTATGGAAACGTTTTCTTTAAAAA
GGATTTCTTGAAGTGTTTCTTCTACTAAGCACTGTTGATTAATCGAGAAC
TTTGTGCAAATTAGTAGTCTACTTTTCAATCCAACGATTAG

Coding sequence (CDS) from alignment at scaffold_302:135257..137797-

>TCONS_00057964 ID=TCONS_00057964|Name=TCONS_00057964|organism=Clytia hemisphaerica|type=CDS|length=2175bp|location=Sequence derived from alignment at scaffold_302:135257..137797- (Clytia hemisphaerica)
ATGCTGACTATGCAGAAATTCCCGATGACGATGAGGATGCTGATTATGCA
CATCCTATGGCAGGTATGGAAACGTTTTCTTTAAAAAGGATTTCTTGAGA
CGACAGATTCAAGTTCTGTCAGTATCATCAACCATAGAGCCTCTGGTGGC
TCCGCACTATACAATTCTTTCAACAATTCAAATAGTTACAGGACACTGCC
GTCGATACCTGCAAGACCCCTTTGATATTTACAGTGGATAATGTGAATAA
AGCAACAGAGCTTGCAGATCTTATCGATGGTTATTGTATGCTTCTTAATA
TGCAACAACCACAAACTCTGATCACCAAAAGAGCAGATGGCGAACTTCAA
CCAAATCCAGTCTATTTATACTTCAAAGATGGGTTCAGTTGCAGGAAAAG
CTACACTCAATATTAAAGTTGAAGGTAGTACTGAGATGCTGACTATGCAG
AAATTCCCGATGACGATGAGGATGCTGATTATGCACATCCTATGGCAGGT
ATGGAAACGTTTTCTTTAAAAAGGATTTCTTGAGACGACAGATTCAAGTT
CTGTCAGTATCATCAACCATAGAGCCTCTGGTGGCTCCGCACTATACAAT
TCTTTCAACAATTCAAATAGTTACAGGACACTGCCGTCGATACCTGCAAG
ACCCCTTTGATATTTACAGTGGATAATGTGAATAAAGCAACAGAGCTTGC
AGATCTTATCGATGGTTATTGTATGCTTCTTAATATGCAACAACCACAAA
CTCTGATCACCAAAAGAGCAGATGGCGAACTTCAACCAAATCCAGTCTAT
TTATACTTCAAAGATGGGTTCAGTTGCAGGAAAAGCTACACTCAATATTA
AAGTTGAAGGTAGTACTGAGATGCTGACTATGCAGAAATTCCCGATGACG
ATGAGGATGCTGATTATGCACATCCTATGGCAGGTATGGAAACGTTTTCT
TTAAAAAGGATTTCTTGAGACGACAGATTCAAGTTCTGTCAGTATCATCA
ACCATAGAGCCTCTGGTGGCTCCGCACTATACAATTCTTTCAACAATTCA
AATAGTTACAGGACACTGCCGTCGATACCTGCAAGACCCCTTTGATATTT
ACAGTGGATAATGTGAATAAAGCAACAGAGCTTGCAGATCTTATCGATGG
TTATTGTATGCTTCTTAATATGCAACAACCACAAACTCTGATCACCAAAA
GAGCAGATGGCGAACTTCAACCAAATCCAGTCTATTTATACTTCAAAGAT
GGGTTCAGTTGCAGGAAAAGCTACACTCAATATTAAAGTTGAAGGTAGTA
CTGAGATGCTGACTATGCAGAAATTCCCGATGACGATGAGGATGCTGATT
ATGCACATCCTATGGCAGGTATGGAAACGTTTTCTTTAAAAAGGATTTCT
TGAGACGACAGATTCAAGTTCTGTCAGTATCATCAACCATAGAGCCTCTG
GTGGCTCCGCACTATACAATTCTTTCAACAATTCAAATAGTTACAGGACA
CTGCCGTCGATACCTGCAAGACCCCTTTGATATTTACAGTGGATAATGTG
AATAAAGCAACAGAGCTTGCAGATCTTATCGATGGTTATTGTATGCTTCT
TAATATGCAACAACCACAAACTCTGATCACCAAAAGAGCAGATGGCGAAC
TTCAACCAAATCCAGTCTATTTATACTTCAAAGATGGGTTCAGTTGCAGG
AAAAGCTACACTCAATATTAAAGTTGAAGGTAGTACTGAGATGCTGACTA
TGCAGAAATTCCCGATGACGATGAGGATGCTGATTATGCACATCCTATGG
CAGGTATGGAAACGTTTTCTTTAAAAAGGATTTCTTGAGACGACAGATTC
AAGTTCTGTCAGTATCATCAACCATAGAGCCTCTGGTGGCTCCGCACTAT
ACAATTCTTTCAACAATTCAAATAGTTACAGGACACTGCCGTCGATACCT
GCAAGACCCCTTTGATATTTACAGTGGATAATGTGAATAAAGCAACAGAG
CTTGCAGATCTTATCGATGGTTATTGTATGCTTCTTAATATGCAACAACC
ACAAACTCTGATCACCAAAAGAGCAGATGGCGAACTTCAACCAAATCCAG
TCTATTTATACTTCAAAGATGGGTTCAGTTGCAGGAAAAGCTACACTCAA
TATTAAAGTTGAAGGTAGTACTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036537XLOC_036537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057964-exon-scaffold_302-1575043694:137612..137797TCONS_00057964-exon-scaffold_302-1575043694:137612..137797Clytia hemisphaericaexon
TCONS_00057964-exon-scaffold_302-1575043694:137266..137383TCONS_00057964-exon-scaffold_302-1575043694:137266..137383Clytia hemisphaericaexon
TCONS_00057964-exon-scaffold_302-1575043694:136809..136845TCONS_00057964-exon-scaffold_302-1575043694:136809..136845Clytia hemisphaericaexon
TCONS_00057964-exon-scaffold_302-1575043694:136526..136608TCONS_00057964-exon-scaffold_302-1575043694:136526..136608Clytia hemisphaericaexon
TCONS_00057964-exon-scaffold_302-1575043694:135257..135434TCONS_00057964-exon-scaffold_302-1575043694:135257..135434Clytia hemisphaericaexon
TCONS_00057964-exon-scaffold_302-1510915933:137612..137797TCONS_00057964-exon-scaffold_302-1510915933:137612..137797Clytia hemisphaericaexon
TCONS_00057964-exon-scaffold_302-1510915933:137266..137383TCONS_00057964-exon-scaffold_302-1510915933:137266..137383Clytia hemisphaericaexon
TCONS_00057964-exon-scaffold_302-1510915933:136809..136845TCONS_00057964-exon-scaffold_302-1510915933:136809..136845Clytia hemisphaericaexon
TCONS_00057964-exon-scaffold_302-1510915933:136526..136608TCONS_00057964-exon-scaffold_302-1510915933:136526..136608Clytia hemisphaericaexon
TCONS_00057964-exon-scaffold_302-1510915933:135257..135434TCONS_00057964-exon-scaffold_302-1510915933:135257..135434Clytia hemisphaericaexon
TCONS_00057964-exon-scaffold_302-1491911889:137612..137797TCONS_00057964-exon-scaffold_302-1491911889:137612..137797Clytia hemisphaericaexon
TCONS_00057964-exon-scaffold_302-1491911889:137266..137383TCONS_00057964-exon-scaffold_302-1491911889:137266..137383Clytia hemisphaericaexon
TCONS_00057964-exon-scaffold_302-1491911889:136809..136845TCONS_00057964-exon-scaffold_302-1491911889:136809..136845Clytia hemisphaericaexon
TCONS_00057964-exon-scaffold_302-1491911889:136526..136608TCONS_00057964-exon-scaffold_302-1491911889:136526..136608Clytia hemisphaericaexon
TCONS_00057964-exon-scaffold_302-1491911889:135257..135434TCONS_00057964-exon-scaffold_302-1491911889:135257..135434Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057964-proteinTCONS_00057964-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:135257..137797 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.68917	5.29967	4.90584	4.10872	31.6523	23.4711	22.7571	23.7956	15.2109	19.051	14.4894	11.3247	12.78	12.1578	12.9693	12.6309	22.2577	21.9063	12.0089	15.494	14.1102	13.8476	19.016	22.6663	18.2576	16.223	11.5387	9.45641	17.6229	21.7421
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH_dom-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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