Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058007 ID=TCONS_00058007|Name=TCONS_00058007|organism=Clytia hemisphaerica|type=transcript|length=1071bp TGTTTTTGTATCACTCTTTGAATATGCAAAGGCTTCTCTCCAATACGACC AATGTGCGGGTGGAGATGTAATTTTCACTGAACCAACACAAGGAATGGAG CTAATACACCCAGATCCTGCAAATCGGTGGTATTTTGAAATCCCATCGAC CACAGTTCATGGATGTTTTGCTGGATGTCGCCAAGAAGTCGAATGTAAAT CGGCAATGTTCTTTGAAGATGATGGGAGATGTTTATTGCAAAATTTAGAT TTGTTTGGGCTTAAACCTTTTATCAAGTTATCAACAAGAGTGCGTTACTT TGAGAAGCATGAATGTTCACCAACCTTTGCACaagaaattaaatttctgc AAGTGATAACGGATGCTATGGATTGCAAAGATATCTATCAGAAAGGATGG CGTACCAATGGCATCTATGGTGTCAAAAACTTGAAGGATGACGGTACCTT CAAAGTGATTCTGTGTGCAATGGACATCCTTGGAGGTGGTTGGTCCGTTA TTCAACAGCGAATCAAGATGGATATGAGCTTTAAACGAAAAAGGAATGTA TACACCGATGGTTTCGGACAACTTAATGGTGACTTTTGGTATGGGAACGA TAAGATTCATGGTTTGACACGCGGTAACCAAAATGAGGTTTTATTTATCt tgaaagatgatgatgatgaactTCACTACCCTCTGTACGATGGATTCAAT GTGGGTACAGCAGCGGAAAATTATAAGCTGACTGTCGGTCACTATCGTTA CATTGGCAAAGGTAAAGAAGGGCTGGATGCATTCGAAAAACACAATAATA TTGAGTTCTCGACCCATGATGACGATAATGACAAAGACACGTCTataaat tgttcaaaatcaCTTGGGGGTAGGGGAGGGTTTTGGTTCACAGATTGCCG CAGTGTAAACATCAATGGAGATAATGAAGGAGAAaaaaagggtggtatca aaTTCAGTGGTCTCACTACAGAAACGAGCAATTTAAAAGAAACCACCATG CTTATTCGAAGAAAATAAAACACTTATGAACATTTATaaaacacctaaaa attttcacaccttgagcatga Run BLAST on NCBI protein sequence of TCONS_00058007-protein >TCONS_00058007-protein ID=TCONS_00058007-protein|Name=TCONS_00058007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
VFVSLFEYAKASLQYDQCAGGDVIFTEPTQGMELIHPDPANRWYFEIPST TVHGCFAGCRQEVECKSAMFFEDDGRCLLQNLDLFGLKPFIKLSTRVRYF EKHECSPTFAQEIKFLQVITDAMDCKDIYQKGWRTNGIYGVKNLKDDGTF KVILCAMDILGGGWSVIQQRIKMDMSFKRKRNVYTDGFGQLNGDFWYGND KIHGLTRGNQNEVLFILKDDDDELHYPLYDGFNVGTAAENYKLTVGHYRY IGKGKEGLDAFEKHNNIEFSTHDDDNDKDTSINCSKSLGGRGGFWFTDCR SVNINGDNEGEKKGGIKFSGLTTETSNLKETTMLIRRK Run BLAST on NCBI transcript from alignment at scaffold_302:410032..411102 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058007 ID=TCONS_00058007|Name=TCONS_00058007|organism=Clytia hemisphaerica|type=transcript|length=1071bp|location=Sequence derived from alignment at scaffold_302:410032..411102 (Clytia hemisphaerica) tcatgctcaaggtgtgaaaatttttaggtgttttATAAATGTTCATAAGT
GTTTTATTTTCTTCGAATAAGCATGGTGGTTTCTTTTAAATTGCTCGTTT
CTGTAGTGAGACCACTGAAtttgataccaccctttttTTCTCCTTCATTA
TCTCCATTGATGTTTACACTGCGGCAATCTGTGAACCAAAACCCTCCCCT
ACCCCCAAGtgattttgaacaatttatAGACGTGTCTTTGTCATTATCGT
CATCATGGGTCGAGAACTCAATATTATTGTGTTTTTCGAATGCATCCAGC
CCTTCTTTACCTTTGCCAATGTAACGATAGTGACCGACAGTCAGCTTATA
ATTTTCCGCTGCTGTACCCACATTGAATCCATCGTACAGAGGGTAGTGAa
gttcatcatcatcatctttcaaGATAAATAAAACCTCATTTTGGTTACCG
CGTGTCAAACCATGAATCTTATCGTTCCCATACCAAAAGTCACCATTAAG
TTGTCCGAAACCATCGGTGTATACATTCCTTTTTCGTTTAAAGCTCATAT
CCATCTTGATTCGCTGTTGAATAACGGACCAACCACCTCCAAGGATGTCC
ATTGCACACAGAATCACTTTGAAGGTACCGTCATCCTTCAAGTTTTTGAC
ACCATAGATGCCATTGGTACGCCATCCTTTCTGATAGATATCTTTGCAAT
CCATAGCATCCGTTATCACTTgcagaaatttaatttcttGTGCAAAGGTT
GGTGAACATTCATGCTTCTCAAAGTAACGCACTCTTGTTGATAACTTGAT
AAAAGGTTTAAGCCCAAACAAATCTAAATTTTGCAATAAACATCTCCCAT
CATCTTCAAAGAACATTGCCGATTTACATTCGACTTCTTGGCGACATCCA
GCAAAACATCCATGAACTGTGGTCGATGGGATTTCAAAATACCACCGATT
TGCAGGATCTGGGTGTATTAGCTCCATTCCTTGTGTTGGTTCAGTGAAAA
TTACATCTCCACCCGCACATTGGTCGTATTGGAGAGAAGCCTTTGCATAT
TCAAAGAGTGATACAAAAACA Coding sequence (CDS) from alignment at scaffold_302:410032..411102 >TCONS_00058007 ID=TCONS_00058007|Name=TCONS_00058007|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at scaffold_302:410032..411102 (Clytia hemisphaerica) TTATTTTCTTCGAATAAGCATGGTGGTTTCTTTTAAATTGCTCGTTTCTG TAGTGAGACCACTGAAtttgataccaccctttttTTCTCCTTCATTATCT CCATTGATGTTTACACTGCGGCAATCTGTGAACCAAAACCCTCCCCTACC CCCAAGtgattttgaacaatttatAGACGTGTCTTTGTCATTATCGTCAT CATGGGTCGAGAACTCAATATTATTGTGTTTTTCGAATGCATCCAGCCCT TCTTTACCTTTGCCAATGTAACGATAGTGACCGACAGTCAGCTTATAATT TTCCGCTGCTGTACCCACATTGAATCCATCGTACAGAGGGTAGTGAagtt catcatcatcatctttcaaGATAAATAAAACCTCATTTTGGTTACCGCGT GTCAAACCATGAATCTTATCGTTCCCATACCAAAAGTCACCATTAAGTTG TCCGAAACCATCGGTGTATACATTCCTTTTTCGTTTAAAGCTCATATCCA TCTTGATTCGCTGTTGAATAACGGACCAACCACCTCCAAGGATGTCCATT GCACACAGAATCACTTTGAAGGTACCGTCATCCTTCAAGTTTTTGACACC ATAGATGCCATTGGTACGCCATCCTTTCTGATAGATATCTTTGCAATCCA TAGCATCCGTTATCACTTgcagaaatttaatttcttGTGCAAAGGTTGGT GAACATTCATGCTTCTCAAAGTAACGCACTCTTGTTGATAACTTGATAAA AGGTTTAAGCCCAAACAAATCTAAATTTTGCAATAAACATCTCCCATCAT CTTCAAAGAACATTGCCGATTTACATTCGACTTCTTGGCGACATCCAGCA AAACATCCATGAACTGTGGTCGATGGGATTTCAAAATACCACCGATTTGC AGGATCTGGGTGTATTAGCTCCATTCCTTGTGTTGGTTCAGTGAAAATTA CATCTCCACCCGCACATTGGTCGTATTGGAGAGAAGCCTTTGCATATTCA AAGAGTGATACAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058007-exon-scaffold_302-1491911889:410032..411102 | TCONS_00058007-exon-scaffold_302-1491911889:410032..411102 | Clytia hemisphaerica | exon |
TCONS_00058007-exon-scaffold_302-1510915933:410032..411102 | TCONS_00058007-exon-scaffold_302-1510915933:410032..411102 | Clytia hemisphaerica | exon |
TCONS_00058007-exon-scaffold_302-1575043694:410032..411102 | TCONS_00058007-exon-scaffold_302-1575043694:410032..411102 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_302 | supercontig | scaffold_302:410032..411102 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00058007 vs. Swiss-Prot (Human)
Match: ANGL7 (Angiopoietin-related protein 7 OS=Homo sapiens GN=ANGPTL7 PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.200e-31 Identity = 80/229 (34.93%), Postives = 115/229 (50.22%), Query Frame = 2 Query: 350 QVITDAM-DCKDIYQKGWRTNGIYGVKNLKDDGTFKV-ILCAMDILGGGWSVIQQRIKMDMSFKRKRNVYTDGFGQLNGDFWYGNDKIHGLTRGNQNEVLFILKDDDDELHYPLYDGFNVGTAAENYKLTVGHYRYIGKGKEGLDAFEKHNNIEFSTHDDDNDKDTSINCSKSLGG--RGGFWFTDCRSVNING-----DNEGEKKGGIKFSGLTTETSNLKETTMLIR 1009
Q DA+ DC +YQK +R +G+Y + G+ ++ + C M+ GGGW++IQ+R +SF R Y GFG + GDFW GN+ IH L+R + ++D + L Y Y F +G +Y+L +G+Y G G DA + HNN FST D DND NC +GG+W+ C N+NG + GI + G T +LK M IR
Sbjct: 122 QTSADAIYDCSSLYQKNYRISGVYKLPPDDFLGSPELEVFCDMETSGGGWTIIQRRKSGLVSFYRDWKQYKQGFGSIRGDFWLGNEHIHRLSR-QPTRLRVEMEDWEGNLRYAEYSHFVLGNELNSYRLFLGNY----TGNVGNDALQYHNNTAFSTKDKDND-----NCLDKCAQLRKGGYWYNCCTDSNLNGVYYRLGEHNKHLDGITWYGWHGSTYSLKRVEMKIR 340
The following BLAST results are available for this feature:
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