Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058018 ID=TCONS_00058018|Name=TCONS_00058018|organism=Clytia hemisphaerica|type=transcript|length=1669bp atttgaaatagaaatagttttttttgtaaaattagaCAAAGGGCAACCAA TGGGtggaataaaaataacaaaattcttaaaagaaagaaagaaaactttt tgaaaagattaaCATCACAAGATTATACTGTCAAACAGACTATATTGAGC ACTGgtttattttgagcaattttgaggaTACGAGATGAAAATTATATCGT TATTTTTTGCATCTTTTTGCATCAATGCTGTTTATTCCAAGTCTTTGAAC GATAAAGATGAAGATCAACAAAGCCATGGTAACATGGTTGGCAAAGGTCC ATTTCGAATTCCACACAAGCGAGAATCTTACGGTATGattgtcaaaaaag aaaatgaagcagAAGATCACACCTGGAAAGAAAGTACAAAACAAAATGGT CTTCAAAAACGAAAGGTTGAGACGTCAGGTTGGCTTGatatgaagaagaa gaagagatcAGGTGATGAGGAAGATGATTTCCAAAAACCAGGGATCGATG AAGTTAAGGATAAAGCATTCATTCCAATGAAATTATACGCTTTATCCAGA AAACGAAGTTTTGCAGCTGAAAATAATCCCATTTCAAAATGGTACAAAAG AGACAGCGAAAATGGTAACCCAATTCATAAATGGTATAAGAGCGAAGTGA GAAATGCAGATGATGATGTGAATGGGGAAATTTTCGAAGATAAATTGGAA CAGGATCGACTTCCAACGCGATGGATGGATGAGCTTTCTCGATCGGGCAC CAATCAAGATCTTGAAGATGAATATGAAATTAAAGAGCGCAATTTCAAAG AAGATGATGAACGAAAGATGAGACAAAACGGACTGCAAAAGAAAGATGAC TATGGACAATATGATGTTGAGTACGAGAAGATCATGAGACGGCAAGCCGA CGAACAACAAAAGAAGAACGACGACTATAGACGTTACAATGAAGAGAACG AGAAGATCATGAGACGGCAAGCCGACGAACAACAAAAGAAGAACGACGAC TATAGACGTTACAATGAAGAGAACGAGAAGATCATGAGACGGCAAGCCGA CGAACAACAAAAGAAGAACGACGACTATAGAAGTTACAATGAAGAGAACG AGAAGATTATGAGACGGCAAGCCGACGAACAACGCAAGAAGAACGACTAC TATAGACGTTACAATGAAGAGAACGAGAAGATTATGAGACGGCAAGCCGA CGAACAACGCAAGAAGAATAACGACTATAGACGTTACAATGAAGAGTACG AGAATCTCATGAGACGACAAGCCGACGAACAACAAAATGAAAACCTTCCA ACACGTTGGATGAAAGATGAATATGATCGAATAATGCCAGCCACCTTCAC TCTTCGCCAACATCCAGATACCTTTATACCAAAGCGTGAACATGTCACAG GTTACTTCGATGACGATGATGCTATCACGGCTAATGGTAACCGCCGTGAT TCACGAAGGTTCAGAAAATAACGAAAAAGAGGAGTGAGAAAGTCAATGGG GTAAAACACTGGATGCTTTTAACGTAAATCTCAAGAATATTTCAtgtttt aaagaagaaaaaaatgaacttttttcattaatgatattttgaaatattaa aaacatttaatgttttcaattttagatATAATAGATAATACAAGACTATG TGcacagttaaaaaaaaac Run BLAST on NCBI protein sequence of TCONS_00058018-protein >TCONS_00058018-protein ID=TCONS_00058018-protein|Name=TCONS_00058018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp
MKIISLFFASFCINAVYSKSLNDKDEDQQSHGNMVGKGPFRIPHKRESYG MIVKKENEAEDHTWKESTKQNGLQKRKVETSGWLDMKKKKRSGDEEDDFQ KPGIDEVKDKAFIPMKLYALSRKRSFAAENNPISKWYKRDSENGNPIHKW YKSEVRNADDDVNGEIFEDKLEQDRLPTRWMDELSRSGTNQDLEDEYEIK ERNFKEDDERKMRQNGLQKKDDYGQYDVEYEKIMRRQADEQQKKNDDYRR YNEENEKIMRRQADEQQKKNDDYRRYNEENEKIMRRQADEQQKKNDDYRS YNEENEKIMRRQADEQRKKNDYYRRYNEENEKIMRRQADEQRKKNNDYRR YNEEYENLMRRQADEQQNENLPTRWMKDEYDRIMPATFTLRQHPDTFIPK REHVTGYFDDDDAITANGNRRDSRRFRK Run BLAST on NCBI transcript from alignment at scaffold_304:239860..242119+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058018 ID=TCONS_00058018|Name=TCONS_00058018|organism=Clytia hemisphaerica|type=transcript|length=2260bp|location=Sequence derived from alignment at scaffold_304:239860..242119+ (Clytia hemisphaerica) atttgaaatagaaatagttttttttgtaaaattagaCAAAGGGCAACCAA
TGGGtggaataaaaataacaaaattcttaaaagaaagaaagaaaactttt
tgaaaagattaaCATCACAAGATTATACTGTCAAACAGACTATATTGAGC
ACTGgtttattttgagcaattttgaggaTACGAGATGAAAATTATATCGT
TATTTTTTGCATCTTTTTGCATCAATGCTGTTTATTCCAAGTCTTTGAAC
GATAAAGATGGTAAGATTTTACATAATCAGACACTGCTATTCAGGTTAAG
tcccggtggaattttttcaCACGGTTGGGAAAAATGGGGGgttagaaatt
ctattgctcccagctcaaaaattccaattaaaattgttttgaagtgCCAT
CTTTTTGACGGTGGTCCCAACGGGTCTGTTGGACGAAACTGaataaaaga
aaagatttgATGGATGGATTATGTTTACTAGAAATCTTACACACCCCTAT
CTCATTCACCCAGTGGAAGAACTAACCACAGTTAAAGATTTCCAAGTAGG
AATGAGAGCTTAGTGTTATTTTCCGATGGGAGTTAAATTCAGGGTCCATT
TCTCACTAGGAATAGTTTTCCGGTCAGCTTTTTAATAGGTAAAAGGTCCC
TTCCGATCTTGTTTACATAACAACAATGGAACAGAGTTCAACATCTCTTT
GAGGGGGTATCTGACAGATTTGTGCATCTTTATCCctttaaattgaatag
aaaatagcatgAAACAGATTCACCAATCCTATGAAATAAGCTAATTGGTG
ACCGAAGGGTTTTCAAACATCGTGTTATTAATTCTTCATTTTTGGTTTTA
GAAGATCAACAAAGCCATGGTAACATGGTTGGCAAAGGTCCATTTCGAAT
TCCACACAAGCGAGAATCTTACGGTATGattgtcaaaaaagaaaatgaag
cagAAGATCACACCTGGAAAGAAAGTACAAAACAAAATGGTCTTCAAAAA
CGAAAGGTTGAGACGTCAGGTTGGCTTGatatgaagaagaagaagagatc
AGGTGATGAGGAAGATGATTTCCAAAAACCAGGGATCGATGAAGTTAAGG
ATAAAGCATTCATTCCAATGAAATTATACGCTTTATCCAGAAAACGAAGT
TTTGCAGCTGAAAATAATCCCATTTCAAAATGGTACAAAAGAGACAGCGA
AAATGGTAACCCAATTCATAAATGGTATAAGAGCGAAGTGAGAAATGCAG
ATGATGATGTGAATGGGGAAATTTTCGAAGATAAATTGGAACAGGATCGA
CTTCCAACGCGATGGATGGATGAGCTTTCTCGATCGGGCACCAATCAAGA
TCTTGAAGATGAATATGAAATTAAAGAGCGCAATTTCAAAGAAGATGATG
AACGAAAGATGAGACAAAACGGACTGCAAAAGAAAGATGACTATGGACAA
TATGATGTTGAGTACGAGAAGATCATGAGACGGCAAGCCGACGAACAACA
AAAGAAGAACGACGACTATAGACGTTACAATGAAGAGAACGAGAAGATCA
TGAGACGGCAAGCCGACGAACAACAAAAGAAGAACGACGACTATAGACGT
TACAATGAAGAGAACGAGAAGATCATGAGACGGCAAGCCGACGAACAACA
AAAGAAGAACGACGACTATAGAAGTTACAATGAAGAGAACGAGAAGATTA
TGAGACGGCAAGCCGACGAACAACGCAAGAAGAACGACTACTATAGACGT
TACAATGAAGAGAACGAGAAGATTATGAGACGGCAAGCCGACGAACAACG
CAAGAAGAATAACGACTATAGACGTTACAATGAAGAGTACGAGAATCTCA
TGAGACGACAAGCCGACGAACAACAAAATGAAAACCTTCCAACACGTTGG
ATGAAAGATGAATATGATCGAATAATGCCAGCCACCTTCACTCTTCGCCA
ACATCCAGATACCTTTATACCAAAGCGTGAACATGTCACAGGTTACTTCG
ATGACGATGATGCTATCACGGCTAATGGTAACCGCCGTGATTCACGAAGG
TTCAGAAAATAACGAAAAAGAGGAGTGAGAAAGTCAATGGGGTAAAACAC
TGGATGCTTTTAACGTAAATCTCAAGAATATTTCAtgttttaaagaagaa
aaaaatgaacttttttcattaatgatattttgaaatattaaaaacattta
atgttttcaattttagatATAATAGATAATACAAGACTATGTGcacagtt
aaaaaaaaac Coding sequence (CDS) from alignment at scaffold_304:239860..242119+ >TCONS_00058018 ID=TCONS_00058018|Name=TCONS_00058018|organism=Clytia hemisphaerica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_304:239860..242119+ (Clytia hemisphaerica) ATGAAAATTATATCGTTATTTTTTGCATCTTTTTGCATCAATGCTGTTTA TTCCAAGTCTTTGAACGATAAAGATGAAGATCAACAAAGCCATGGTAACA TGGTTGGCAAAGGTCCATTTCGAATTCCACACAAGCGAGAATCTTACGGT ATGattgtcaaaaaagaaaatgaagcagAAGATCACACCTGGAAAGAAAG TACAAAACAAAATGGTCTTCAAAAACGAAAGGTTGAGACGTCAGGTTGGC TTGatatgaagaagaagaagagatcAGGTGATGAGGAAGATGATTTCCAA AAACCAGGGATCGATGAAGTTAAGGATAAAGCATTCATTCCAATGAAATT ATACGCTTTATCCAGAAAACGAAGTTTTGCAGCTGAAAATAATCCCATTT CAAAATGGTACAAAAGAGACAGCGAAAATGGTAACCCAATTCATAAATGG TATAAGAGCGAAGTGAGAAATGCAGATGATGATGTGAATGGGGAAATTTT CGAAGATAAATTGGAACAGGATCGACTTCCAACGCGATGGATGGATGAGC TTTCTCGATCGGGCACCAATCAAGATCTTGAAGATGAATATGAAATTAAA GAGCGCAATTTCAAAGAAGATGATGAACGAAAGATGAGACAAAACGGACT GCAAAAGAAAGATGACTATGGACAATATGATGTTGAGTACGAGAAGATCA TGAGACGGCAAGCCGACGAACAACAAAAGAAGAACGACGACTATAGACGT TACAATGAAGAGAACGAGAAGATCATGAGACGGCAAGCCGACGAACAACA AAAGAAGAACGACGACTATAGACGTTACAATGAAGAGAACGAGAAGATCA TGAGACGGCAAGCCGACGAACAACAAAAGAAGAACGACGACTATAGAAGT TACAATGAAGAGAACGAGAAGATTATGAGACGGCAAGCCGACGAACAACG CAAGAAGAACGACTACTATAGACGTTACAATGAAGAGAACGAGAAGATTA TGAGACGGCAAGCCGACGAACAACGCAAGAAGAATAACGACTATAGACGT TACAATGAAGAGTACGAGAATCTCATGAGACGACAAGCCGACGAACAACA AAATGAAAACCTTCCAACACGTTGGATGAAAGATGAATATGATCGAATAA TGCCAGCCACCTTCACTCTTCGCCAACATCCAGATACCTTTATACCAAAG CGTGAACATGTCACAGGTTACTTCGATGACGATGATGCTATCACGGCTAA TGGTAACCGCCGTGATTCACGAAGGTTCAGAAAATAAATGAAAATTATAT CGTTATTTTTTGCATCTTTTTGCATCAATGCTGTTTATTCCAAGTCTTTG AACGATAAAGATGAAGATCAACAAAGCCATGGTAACATGGTTGGCAAAGG TCCATTTCGAATTCCACACAAGCGAGAATCTTACGGTATGattgtcaaaa aagaaaatgaagcagAAGATCACACCTGGAAAGAAAGTACAAAACAAAAT GGTCTTCAAAAACGAAAGGTTGAGACGTCAGGTTGGCTTGatatgaagaa gaagaagagatcAGGTGATGAGGAAGATGATTTCCAAAAACCAGGGATCG ATGAAGTTAAGGATAAAGCATTCATTCCAATGAAATTATACGCTTTATCC AGAAAACGAAGTTTTGCAGCTGAAAATAATCCCATTTCAAAATGGTACAA AAGAGACAGCGAAAATGGTAACCCAATTCATAAATGGTATAAGAGCGAAG TGAGAAATGCAGATGATGATGTGAATGGGGAAATTTTCGAAGATAAATTG GAACAGGATCGACTTCCAACGCGATGGATGGATGAGCTTTCTCGATCGGG CACCAATCAAGATCTTGAAGATGAATATGAAATTAAAGAGCGCAATTTCA AAGAAGATGATGAACGAAAGATGAGACAAAACGGACTGCAAAAGAAAGAT GACTATGGACAATATGATGTTGAGTACGAGAAGATCATGAGACGGCAAGC CGACGAACAACAAAAGAAGAACGACGACTATAGACGTTACAATGAAGAGA ACGAGAAGATCATGAGACGGCAAGCCGACGAACAACAAAAGAAGAACGAC GACTATAGACGTTACAATGAAGAGAACGAGAAGATCATGAGACGGCAAGC CGACGAACAACAAAAGAAGAACGACGACTATAGAAGTTACAATGAAGAGA ACGAGAAGATTATGAGACGGCAAGCCGACGAACAACGCAAGAAGAACGAC TACTATAGACGTTACAATGAAGAGAACGAGAAGATTATGAGACGGCAAGC CGACGAACAACGCAAGAAGAATAACGACTATAGACGTTACAATGAAGAGT ACGAGAATCTCATGAGACGACAAGCCGACGAACAACAAAATGAAAACCTT CCAACACGTTGGATGAAAGATGAATATGATCGAATAATGCCAGCCACCTT CACTCTTCGCCAACATCCAGATACCTTTATACCAAAGCGTGAACATGTCA CAGGTTACTTCGATGACGATGATGCTATCACGGCTAATGGTAACCGCCGT GATTCACGAAGGTTCAGAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058018-exon-scaffold_304-1491911889:239860..240119 | TCONS_00058018-exon-scaffold_304-1491911889:239860..240119 | Clytia hemisphaerica | exon |
TCONS_00058018-exon-scaffold_304-1510915933:239860..240119 | TCONS_00058018-exon-scaffold_304-1510915933:239860..240119 | Clytia hemisphaerica | exon |
TCONS_00058018-exon-scaffold_304-1575043694:239860..240119 | TCONS_00058018-exon-scaffold_304-1575043694:239860..240119 | Clytia hemisphaerica | exon |
TCONS_00058018-exon-scaffold_304-1491911889:240711..242119 | TCONS_00058018-exon-scaffold_304-1491911889:240711..242119 | Clytia hemisphaerica | exon |
TCONS_00058018-exon-scaffold_304-1510915933:240711..242119 | TCONS_00058018-exon-scaffold_304-1510915933:240711..242119 | Clytia hemisphaerica | exon |
TCONS_00058018-exon-scaffold_304-1575043694:240711..242119 | TCONS_00058018-exon-scaffold_304-1575043694:240711..242119 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_304 | supercontig | scaffold_304:239860..242119 + |
Blast
The following BLAST results are available for this feature:
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