TCONS_00058018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058018
Unique NameTCONS_00058018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058018 ID=TCONS_00058018|Name=TCONS_00058018|organism=Clytia hemisphaerica|type=transcript|length=1669bp
atttgaaatagaaatagttttttttgtaaaattagaCAAAGGGCAACCAA
TGGGtggaataaaaataacaaaattcttaaaagaaagaaagaaaactttt
tgaaaagattaaCATCACAAGATTATACTGTCAAACAGACTATATTGAGC
ACTGgtttattttgagcaattttgaggaTACGAGATGAAAATTATATCGT
TATTTTTTGCATCTTTTTGCATCAATGCTGTTTATTCCAAGTCTTTGAAC
GATAAAGATGAAGATCAACAAAGCCATGGTAACATGGTTGGCAAAGGTCC
ATTTCGAATTCCACACAAGCGAGAATCTTACGGTATGattgtcaaaaaag
aaaatgaagcagAAGATCACACCTGGAAAGAAAGTACAAAACAAAATGGT
CTTCAAAAACGAAAGGTTGAGACGTCAGGTTGGCTTGatatgaagaagaa
gaagagatcAGGTGATGAGGAAGATGATTTCCAAAAACCAGGGATCGATG
AAGTTAAGGATAAAGCATTCATTCCAATGAAATTATACGCTTTATCCAGA
AAACGAAGTTTTGCAGCTGAAAATAATCCCATTTCAAAATGGTACAAAAG
AGACAGCGAAAATGGTAACCCAATTCATAAATGGTATAAGAGCGAAGTGA
GAAATGCAGATGATGATGTGAATGGGGAAATTTTCGAAGATAAATTGGAA
CAGGATCGACTTCCAACGCGATGGATGGATGAGCTTTCTCGATCGGGCAC
CAATCAAGATCTTGAAGATGAATATGAAATTAAAGAGCGCAATTTCAAAG
AAGATGATGAACGAAAGATGAGACAAAACGGACTGCAAAAGAAAGATGAC
TATGGACAATATGATGTTGAGTACGAGAAGATCATGAGACGGCAAGCCGA
CGAACAACAAAAGAAGAACGACGACTATAGACGTTACAATGAAGAGAACG
AGAAGATCATGAGACGGCAAGCCGACGAACAACAAAAGAAGAACGACGAC
TATAGACGTTACAATGAAGAGAACGAGAAGATCATGAGACGGCAAGCCGA
CGAACAACAAAAGAAGAACGACGACTATAGAAGTTACAATGAAGAGAACG
AGAAGATTATGAGACGGCAAGCCGACGAACAACGCAAGAAGAACGACTAC
TATAGACGTTACAATGAAGAGAACGAGAAGATTATGAGACGGCAAGCCGA
CGAACAACGCAAGAAGAATAACGACTATAGACGTTACAATGAAGAGTACG
AGAATCTCATGAGACGACAAGCCGACGAACAACAAAATGAAAACCTTCCA
ACACGTTGGATGAAAGATGAATATGATCGAATAATGCCAGCCACCTTCAC
TCTTCGCCAACATCCAGATACCTTTATACCAAAGCGTGAACATGTCACAG
GTTACTTCGATGACGATGATGCTATCACGGCTAATGGTAACCGCCGTGAT
TCACGAAGGTTCAGAAAATAACGAAAAAGAGGAGTGAGAAAGTCAATGGG
GTAAAACACTGGATGCTTTTAACGTAAATCTCAAGAATATTTCAtgtttt
aaagaagaaaaaaatgaacttttttcattaatgatattttgaaatattaa
aaacatttaatgttttcaattttagatATAATAGATAATACAAGACTATG
TGcacagttaaaaaaaaac
Run BLAST on NCBI

protein sequence of TCONS_00058018-protein

>TCONS_00058018-protein ID=TCONS_00058018-protein|Name=TCONS_00058018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp
MKIISLFFASFCINAVYSKSLNDKDEDQQSHGNMVGKGPFRIPHKRESYG
MIVKKENEAEDHTWKESTKQNGLQKRKVETSGWLDMKKKKRSGDEEDDFQ
KPGIDEVKDKAFIPMKLYALSRKRSFAAENNPISKWYKRDSENGNPIHKW
YKSEVRNADDDVNGEIFEDKLEQDRLPTRWMDELSRSGTNQDLEDEYEIK
ERNFKEDDERKMRQNGLQKKDDYGQYDVEYEKIMRRQADEQQKKNDDYRR
YNEENEKIMRRQADEQQKKNDDYRRYNEENEKIMRRQADEQQKKNDDYRS
YNEENEKIMRRQADEQRKKNDYYRRYNEENEKIMRRQADEQRKKNNDYRR
YNEEYENLMRRQADEQQNENLPTRWMKDEYDRIMPATFTLRQHPDTFIPK
REHVTGYFDDDDAITANGNRRDSRRFRK
Run BLAST on NCBI

transcript from alignment at scaffold_304:239860..242119+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058018 ID=TCONS_00058018|Name=TCONS_00058018|organism=Clytia hemisphaerica|type=transcript|length=2260bp|location=Sequence derived from alignment at scaffold_304:239860..242119+ (Clytia hemisphaerica)
atttgaaatagaaatagttttttttgtaaaattagaCAAAGGGCAACCAA TGGGtggaataaaaataacaaaattcttaaaagaaagaaagaaaactttt tgaaaagattaaCATCACAAGATTATACTGTCAAACAGACTATATTGAGC ACTGgtttattttgagcaattttgaggaTACGAGATGAAAATTATATCGT TATTTTTTGCATCTTTTTGCATCAATGCTGTTTATTCCAAGTCTTTGAAC GATAAAGATGGTAAGATTTTACATAATCAGACACTGCTATTCAGGTTAAG tcccggtggaattttttcaCACGGTTGGGAAAAATGGGGGgttagaaatt ctattgctcccagctcaaaaattccaattaaaattgttttgaagtgCCAT CTTTTTGACGGTGGTCCCAACGGGTCTGTTGGACGAAACTGaataaaaga aaagatttgATGGATGGATTATGTTTACTAGAAATCTTACACACCCCTAT CTCATTCACCCAGTGGAAGAACTAACCACAGTTAAAGATTTCCAAGTAGG AATGAGAGCTTAGTGTTATTTTCCGATGGGAGTTAAATTCAGGGTCCATT TCTCACTAGGAATAGTTTTCCGGTCAGCTTTTTAATAGGTAAAAGGTCCC TTCCGATCTTGTTTACATAACAACAATGGAACAGAGTTCAACATCTCTTT GAGGGGGTATCTGACAGATTTGTGCATCTTTATCCctttaaattgaatag aaaatagcatgAAACAGATTCACCAATCCTATGAAATAAGCTAATTGGTG ACCGAAGGGTTTTCAAACATCGTGTTATTAATTCTTCATTTTTGGTTTTA GAAGATCAACAAAGCCATGGTAACATGGTTGGCAAAGGTCCATTTCGAAT TCCACACAAGCGAGAATCTTACGGTATGattgtcaaaaaagaaaatgaag cagAAGATCACACCTGGAAAGAAAGTACAAAACAAAATGGTCTTCAAAAA CGAAAGGTTGAGACGTCAGGTTGGCTTGatatgaagaagaagaagagatc AGGTGATGAGGAAGATGATTTCCAAAAACCAGGGATCGATGAAGTTAAGG ATAAAGCATTCATTCCAATGAAATTATACGCTTTATCCAGAAAACGAAGT TTTGCAGCTGAAAATAATCCCATTTCAAAATGGTACAAAAGAGACAGCGA AAATGGTAACCCAATTCATAAATGGTATAAGAGCGAAGTGAGAAATGCAG ATGATGATGTGAATGGGGAAATTTTCGAAGATAAATTGGAACAGGATCGA CTTCCAACGCGATGGATGGATGAGCTTTCTCGATCGGGCACCAATCAAGA TCTTGAAGATGAATATGAAATTAAAGAGCGCAATTTCAAAGAAGATGATG AACGAAAGATGAGACAAAACGGACTGCAAAAGAAAGATGACTATGGACAA TATGATGTTGAGTACGAGAAGATCATGAGACGGCAAGCCGACGAACAACA AAAGAAGAACGACGACTATAGACGTTACAATGAAGAGAACGAGAAGATCA TGAGACGGCAAGCCGACGAACAACAAAAGAAGAACGACGACTATAGACGT TACAATGAAGAGAACGAGAAGATCATGAGACGGCAAGCCGACGAACAACA AAAGAAGAACGACGACTATAGAAGTTACAATGAAGAGAACGAGAAGATTA TGAGACGGCAAGCCGACGAACAACGCAAGAAGAACGACTACTATAGACGT TACAATGAAGAGAACGAGAAGATTATGAGACGGCAAGCCGACGAACAACG CAAGAAGAATAACGACTATAGACGTTACAATGAAGAGTACGAGAATCTCA TGAGACGACAAGCCGACGAACAACAAAATGAAAACCTTCCAACACGTTGG ATGAAAGATGAATATGATCGAATAATGCCAGCCACCTTCACTCTTCGCCA ACATCCAGATACCTTTATACCAAAGCGTGAACATGTCACAGGTTACTTCG ATGACGATGATGCTATCACGGCTAATGGTAACCGCCGTGATTCACGAAGG TTCAGAAAATAACGAAAAAGAGGAGTGAGAAAGTCAATGGGGTAAAACAC TGGATGCTTTTAACGTAAATCTCAAGAATATTTCAtgttttaaagaagaa aaaaatgaacttttttcattaatgatattttgaaatattaaaaacattta atgttttcaattttagatATAATAGATAATACAAGACTATGTGcacagtt aaaaaaaaac

Coding sequence (CDS) from alignment at scaffold_304:239860..242119+

>TCONS_00058018 ID=TCONS_00058018|Name=TCONS_00058018|organism=Clytia hemisphaerica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_304:239860..242119+ (Clytia hemisphaerica)
ATGAAAATTATATCGTTATTTTTTGCATCTTTTTGCATCAATGCTGTTTA
TTCCAAGTCTTTGAACGATAAAGATGAAGATCAACAAAGCCATGGTAACA
TGGTTGGCAAAGGTCCATTTCGAATTCCACACAAGCGAGAATCTTACGGT
ATGattgtcaaaaaagaaaatgaagcagAAGATCACACCTGGAAAGAAAG
TACAAAACAAAATGGTCTTCAAAAACGAAAGGTTGAGACGTCAGGTTGGC
TTGatatgaagaagaagaagagatcAGGTGATGAGGAAGATGATTTCCAA
AAACCAGGGATCGATGAAGTTAAGGATAAAGCATTCATTCCAATGAAATT
ATACGCTTTATCCAGAAAACGAAGTTTTGCAGCTGAAAATAATCCCATTT
CAAAATGGTACAAAAGAGACAGCGAAAATGGTAACCCAATTCATAAATGG
TATAAGAGCGAAGTGAGAAATGCAGATGATGATGTGAATGGGGAAATTTT
CGAAGATAAATTGGAACAGGATCGACTTCCAACGCGATGGATGGATGAGC
TTTCTCGATCGGGCACCAATCAAGATCTTGAAGATGAATATGAAATTAAA
GAGCGCAATTTCAAAGAAGATGATGAACGAAAGATGAGACAAAACGGACT
GCAAAAGAAAGATGACTATGGACAATATGATGTTGAGTACGAGAAGATCA
TGAGACGGCAAGCCGACGAACAACAAAAGAAGAACGACGACTATAGACGT
TACAATGAAGAGAACGAGAAGATCATGAGACGGCAAGCCGACGAACAACA
AAAGAAGAACGACGACTATAGACGTTACAATGAAGAGAACGAGAAGATCA
TGAGACGGCAAGCCGACGAACAACAAAAGAAGAACGACGACTATAGAAGT
TACAATGAAGAGAACGAGAAGATTATGAGACGGCAAGCCGACGAACAACG
CAAGAAGAACGACTACTATAGACGTTACAATGAAGAGAACGAGAAGATTA
TGAGACGGCAAGCCGACGAACAACGCAAGAAGAATAACGACTATAGACGT
TACAATGAAGAGTACGAGAATCTCATGAGACGACAAGCCGACGAACAACA
AAATGAAAACCTTCCAACACGTTGGATGAAAGATGAATATGATCGAATAA
TGCCAGCCACCTTCACTCTTCGCCAACATCCAGATACCTTTATACCAAAG
CGTGAACATGTCACAGGTTACTTCGATGACGATGATGCTATCACGGCTAA
TGGTAACCGCCGTGATTCACGAAGGTTCAGAAAATAAATGAAAATTATAT
CGTTATTTTTTGCATCTTTTTGCATCAATGCTGTTTATTCCAAGTCTTTG
AACGATAAAGATGAAGATCAACAAAGCCATGGTAACATGGTTGGCAAAGG
TCCATTTCGAATTCCACACAAGCGAGAATCTTACGGTATGattgtcaaaa
aagaaaatgaagcagAAGATCACACCTGGAAAGAAAGTACAAAACAAAAT
GGTCTTCAAAAACGAAAGGTTGAGACGTCAGGTTGGCTTGatatgaagaa
gaagaagagatcAGGTGATGAGGAAGATGATTTCCAAAAACCAGGGATCG
ATGAAGTTAAGGATAAAGCATTCATTCCAATGAAATTATACGCTTTATCC
AGAAAACGAAGTTTTGCAGCTGAAAATAATCCCATTTCAAAATGGTACAA
AAGAGACAGCGAAAATGGTAACCCAATTCATAAATGGTATAAGAGCGAAG
TGAGAAATGCAGATGATGATGTGAATGGGGAAATTTTCGAAGATAAATTG
GAACAGGATCGACTTCCAACGCGATGGATGGATGAGCTTTCTCGATCGGG
CACCAATCAAGATCTTGAAGATGAATATGAAATTAAAGAGCGCAATTTCA
AAGAAGATGATGAACGAAAGATGAGACAAAACGGACTGCAAAAGAAAGAT
GACTATGGACAATATGATGTTGAGTACGAGAAGATCATGAGACGGCAAGC
CGACGAACAACAAAAGAAGAACGACGACTATAGACGTTACAATGAAGAGA
ACGAGAAGATCATGAGACGGCAAGCCGACGAACAACAAAAGAAGAACGAC
GACTATAGACGTTACAATGAAGAGAACGAGAAGATCATGAGACGGCAAGC
CGACGAACAACAAAAGAAGAACGACGACTATAGAAGTTACAATGAAGAGA
ACGAGAAGATTATGAGACGGCAAGCCGACGAACAACGCAAGAAGAACGAC
TACTATAGACGTTACAATGAAGAGAACGAGAAGATTATGAGACGGCAAGC
CGACGAACAACGCAAGAAGAATAACGACTATAGACGTTACAATGAAGAGT
ACGAGAATCTCATGAGACGACAAGCCGACGAACAACAAAATGAAAACCTT
CCAACACGTTGGATGAAAGATGAATATGATCGAATAATGCCAGCCACCTT
CACTCTTCGCCAACATCCAGATACCTTTATACCAAAGCGTGAACATGTCA
CAGGTTACTTCGATGACGATGATGCTATCACGGCTAATGGTAACCGCCGT
GATTCACGAAGGTTCAGAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036574XLOC_036574Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058018-proteinTCONS_00058018-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058018-exon-scaffold_304-1491911889:239860..240119TCONS_00058018-exon-scaffold_304-1491911889:239860..240119Clytia hemisphaericaexon
TCONS_00058018-exon-scaffold_304-1510915933:239860..240119TCONS_00058018-exon-scaffold_304-1510915933:239860..240119Clytia hemisphaericaexon
TCONS_00058018-exon-scaffold_304-1575043694:239860..240119TCONS_00058018-exon-scaffold_304-1575043694:239860..240119Clytia hemisphaericaexon
TCONS_00058018-exon-scaffold_304-1491911889:240711..242119TCONS_00058018-exon-scaffold_304-1491911889:240711..242119Clytia hemisphaericaexon
TCONS_00058018-exon-scaffold_304-1510915933:240711..242119TCONS_00058018-exon-scaffold_304-1510915933:240711..242119Clytia hemisphaericaexon
TCONS_00058018-exon-scaffold_304-1575043694:240711..242119TCONS_00058018-exon-scaffold_304-1575043694:240711..242119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_304supercontigscaffold_304:239860..242119 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (22.7954 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0.040954 0 0 0.0323671 0.0323221 0.184618 0 0 5.5455 6.97407 0 0.0270305 13.9557 13.7861 5.26586 7.95372 20.4021 22.7954 0 0.0355599 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600Sequence
Match NameE-valueIdentityDescription
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