TCONS_00058020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058020
Unique NameTCONS_00058020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length767

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058020 ID=TCONS_00058020|Name=TCONS_00058020|organism=Clytia hemisphaerica|type=transcript|length=767bp
ATTTTATCTTCTTTGTGTTATAGATTGTGATAAACCATGTACGCGTGAAT
ACCGTCCAGTTTGTGGAAGTGACGGTCGCATATACGCAAATCCTTGTTTA
CTGAAGAACGCACAATGCAAAAATCCAAGTTTGACCGAGATTAAAGATGC
TGCATGTGAAGAAATGATTGAAAATGACAGGTATAgttgagtctctttaa
ctcgaacctccagtctataactcgaatgtcttctaaactcaaacaagttt
tctCATCCTTTCAGTTAAAAATGCTATATAAAAACCTTACCCTAtagctc
gaaatttccttaactcgaacaaatttgtgctcCTGTGTAGGTTCGAGTTA
TTGGCAGTTATTATCAGGCCATCCACCAAGGTGGCCCTGATCTGACCGGG
CTACTGATCCCGGGCTGTAACCTATTTTGTACTCTACCCAGCTGGCaaac
aacgttatttcaacattTATCCGACGTTTTATTGACgctgtgaacattag
ataaacgttgaagcaacgttgAATGTCAGCTGGGCAGCTGTATATTTCTT
TTTGTGTACAGTGTTCTATTTTGATTGCAGATCAAGATTAAATCTTTGAT
CCAATGAAACGAAACAATCAACCAAGGGACGTATCGATGTAAAATTACTC
CAAAAGCTATCACTTCTTTTCTGCAtgcaatatttttctaaattatttgT
AAATTCTTTTCTAGTGTGcacttttcaaagaaatatAATACCATACACAC
ACACGCAAAGCTTGCCC
Run BLAST on NCBI

transcript from alignment at scaffold_304:112592..113358-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058020 ID=TCONS_00058020|Name=TCONS_00058020|organism=Clytia hemisphaerica|type=transcript|length=767bp|location=Sequence derived from alignment at scaffold_304:112592..113358- (Clytia hemisphaerica)
ATTTTATCTTCTTTGTGTTATAGATTGTGATAAACCATGTACGCGTGAAT
ACCGTCCAGTTTGTGGAAGTGACGGTCGCATATACGCAAATCCTTGTTTA
CTGAAGAACGCACAATGCAAAAATCCAAGTTTGACCGAGATTAAAGATGC
TGCATGTGAAGAAATGATTGAAAATGACAGGTATAGTTGAGTCTCTTTAA
CTCGAACCTCCAGTCTATAACTCGAATGTCTTCTAAACTCAAACAAGTTT
TCTCATCCTTTCAGTTAAAAATGCTATATAAAAACCTTACCCTATAGCTC
GAAATTTCCTTAACTCGAACAAATTTGTGCTCCTGTGTAGGTTCGAGTTA
TTGGCAGTTATTATCAGGCCATCCACCAAGGTGGCCCTGATCTGACCGGG
CTACTGATCCCGGGCTGTAACCTATTTTGTACTCTACCCAGCTGGCAAAC
AACGTTATTTCAACATTTATCCGACGTTTTATTGACGCTGTGAACATTAG
ATAAACGTTGAAGCAACGTTGAATGTCAGCTGGGCAGCTGTATATTTCTT
TTTGTGTACAGTGTTCTATTTTGATTGCAGATCAAGATTAAATCTTTGAT
CCAATGAAACGAAACAATCAACCAAGGGACGTATCGATGTAAAATTACTC
CAAAAGCTATCACTTCTTTTCTGCATGCAATATTTTTCTAAATTATTTGT
AAATTCTTTTCTAGTGTGCACTTTTCAAAGAAATATAATACCATACACAC
ACACGCAAAGCTTGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036576XLOC_036576Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058020-exon-scaffold_304-1575043694:112592..113358TCONS_00058020-exon-scaffold_304-1575043694:112592..113358Clytia hemisphaericaexon
TCONS_00058020-exon-scaffold_304-1510915933:112592..113358TCONS_00058020-exon-scaffold_304-1510915933:112592..113358Clytia hemisphaericaexon
TCONS_00058020-exon-scaffold_304-1491911889:112592..113358TCONS_00058020-exon-scaffold_304-1491911889:112592..113358Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_304supercontigscaffold_304:112592..113358 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100694	0.963814	0.447852	0.77016	0	0.177647	0.107872	0.295205	0	0.197757	0.0933241	0.189603	1.75407	1.46625	0.697648	0.667786	0.262947	1.94074	4.96408	5.28003	0.0959993	0.409274	0.441359	0.407104	0.257551	0.161437	1.44203	0.754043	0.106178	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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