TCONS_00058021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058021
Unique NameTCONS_00058021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058021 ID=TCONS_00058021|Name=TCONS_00058021|organism=Clytia hemisphaerica|type=transcript|length=499bp
CTTTCAAATCTCATACACGGGCTATCCCAGAAAAATAGCGGAAAAATCCC
GGAAAAAGTGACGAGAACCTTAGTGCAGGAATGGGAATCTTATTCACGCC
ACGCACTTTTCTTACACCCTATATTTCTTCTAAGATCAGATTTTATCTTC
TTTGTGTTATAGATTGTGATAAACCATGTACGCGTGAATACCGTCCAGTT
TGTGGAAGTGACGGTCGCATATACGCAAATCCTTGTTTACTGAAGAACGC
ACAATGCAAAAATCCAAGTTTGACCGAGATTAAAGATGCTGCATGTGAAG
AAATGATTGAAAATGACAGATCAAGATTAAATCTTTGATCCAATGAAACG
AAACAATCAACCAAGGGACGTATCGATGTAAAATTACTCCAAAAGCTATC
ACTTCTTTTCTGCAtgcaatatttttctaaattatttgTAAATTCTTTTC
TAGTGTGcacttttcaaagaaatatAATACCATACACACACACGCAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_304:112599..113497-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058021 ID=TCONS_00058021|Name=TCONS_00058021|organism=Clytia hemisphaerica|type=transcript|length=899bp|location=Sequence derived from alignment at scaffold_304:112599..113497- (Clytia hemisphaerica)
CTTTCAAATCTCATACACGGGCTATCCCAGAAAAATAGCGGAAAAATCCC GGAAAAAGTGACGAGAACCTTAGTGCAGGAATGGGAATCTTATTCACGCC ACGCACTTTTCTTACACCCTATATTTCTTCTAAGATCAGATTTTATCTTC TTTGTGTTATAGATTGTGATAAACCATGTACGCGTGAATACCGTCCAGTT TGTGGAAGTGACGGTCGCATATACGCAAATCCTTGTTTACTGAAGAACGC ACAATGCAAAAATCCAAGTTTGACCGAGATTAAAGATGCTGCATGTGAAG AAATGATTGAAAATGACAGGTATAGTTGAGTCTCTTTAACTCGAACCTCC AGTCTATAACTCGAATGTCTTCTAAACTCAAACAAGTTTTCTCATCCTTT CAGTTAAAAATGCTATATAAAAACCTTACCCTATAGCTCGAAATTTCCTT AACTCGAACAAATTTGTGCTCCTGTGTAGGTTCGAGTTATTGGCAGTTAT TATCAGGCCATCCACCAAGGTGGCCCTGATCTGACCGGGCTACTGATCCC GGGCTGTAACCTATTTTGTACTCTACCCAGCTGGCAAACAACGTTATTTC AACATTTATCCGACGTTTTATTGACGCTGTGAACATTAGATAAACGTTGA AGCAACGTTGAATGTCAGCTGGGCAGCTGTATATTTCTTTTTGTGTACAG TGTTCTATTTTGATTGCAGATCAAGATTAAATCTTTGATCCAATGAAACG AAACAATCAACCAAGGGACGTATCGATGTAAAATTACTCCAAAAGCTATC ACTTCTTTTCTGCATGCAATATTTTTCTAAATTATTTGTAAATTCTTTTC TAGTGTGCACTTTTCAAAGAAATATAATACCATACACACACACGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036576XLOC_036576Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058021-exon-scaffold_304-1575043694:113179..113497TCONS_00058021-exon-scaffold_304-1575043694:113179..113497Clytia hemisphaericaexon
TCONS_00058021-exon-scaffold_304-1575043694:112599..112778TCONS_00058021-exon-scaffold_304-1575043694:112599..112778Clytia hemisphaericaexon
TCONS_00058021-exon-scaffold_304-1510915933:113179..113497TCONS_00058021-exon-scaffold_304-1510915933:113179..113497Clytia hemisphaericaexon
TCONS_00058021-exon-scaffold_304-1510915933:112599..112778TCONS_00058021-exon-scaffold_304-1510915933:112599..112778Clytia hemisphaericaexon
TCONS_00058021-exon-scaffold_304-1491911889:113179..113497TCONS_00058021-exon-scaffold_304-1491911889:113179..113497Clytia hemisphaericaexon
TCONS_00058021-exon-scaffold_304-1491911889:112599..112778TCONS_00058021-exon-scaffold_304-1491911889:112599..112778Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_304supercontigscaffold_304:112599..113497 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (10.0159 tpm) - - (487.23 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
289.869 301.639 283.651 287.71 19.3025 14.3898 10.0159 11.0645 25.4635 18.7737 49.398 20.9818 212.887 184.675 18.6641 14.8922 27.9638 46.4375 321.158 487.23 39.5582 33.6558 98.6017 84.1484 60.0558 49.2755 59.46 55.6734 13.7815 15.7711
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450Sequence
Match NameE-valueIdentityDescription
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