TCONS_00058022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058022
Unique NameTCONS_00058022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058022 ID=TCONS_00058022|Name=TCONS_00058022|organism=Clytia hemisphaerica|type=transcript|length=246bp
GATGAAATGCGTTTTAAAGCATTCAGCAATTTTCTACAGATTAAAAAGTT
GAAGTTATAAACATAACATAGACATTGATTTGTGTTCGAGACGTGTCGAT
CAGAGGAATAGCAATGGACATCAAAGCGATTCACATCGTGGTCATCTTTA
TAGTGCTTCAAGGTTTCAACACACACAAATGTGATGCTGAAGGTTTTGAA
GATTATGAAGACAATGAAGATGAAAGTTTTGTCGATATGAAGAANc
Run BLAST on NCBI

transcript from alignment at scaffold_304:113655..115874-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058022 ID=TCONS_00058022|Name=TCONS_00058022|organism=Clytia hemisphaerica|type=transcript|length=2220bp|location=Sequence derived from alignment at scaffold_304:113655..115874- (Clytia hemisphaerica)
GATGAAATGCGTTTTAAAGCATTCAGCAATTTTCTACAGATTAAAAAGTT
GAAGTTATAAACATAACATAGACATTGATTTGTGTTCGAGACGTGTCGAT
CAGAGGAATAGCAATGGACATCAAAGCGATTCACATCGTGGTCATCTTTA
TAGTGCTTCAAGGTAAAACTCTTTTATTTATGCACCCCTGTCTCACAGCC
CAGGTGGAACTCTCCCCACAGTGGAGTGGGTTGATAATTTTCTATCGAAA
TCCCAATGGGGATTTAAATTCTATGGTTTTCAGCCAGGTCAAAGAATCCA
ACCAGATGGCACACAACGTCAAAACAACGTCCATGTGACGTTGTTTTAAC
GTCCAAATAACGTTATTTGAACGTTAAAACAACGTTGTATGCCAGCTGGG
CACTGCGATGATTTTGAAATGCAGTTTTTTTGTTGAATTTCAAACGGGGA
TGAAAAAAAGTCATTTTACAGGTGGGGATGAAATCCTAATTTTCCCAATG
GAGAGGATTCCCTATTTTCGCTAAATCTTTCAGCGGAGTCTATGAAACAG
GGTGTCCATAAAAAAGCTATGTTGTATTCAAATAATATCCCAGTAAAAGA
TACTTATTTTTCTGGTCCCTTCTTTGTCTAGCCTTGATATCCAAGCCTTA
AAGGGCCATTAAAGTAGTAAAATGTAAACATTACACGAACCACGTGTCAT
TAAAGAGAACAATTAAAATCACGTGTCCAAAACAAACTTGTAAAACAATT
GAACAATCAAAATTAGCCATATTTGGTTTGATCTTTTGACATGTGACATT
TGTTTTGATTTTGTATACACTGCATACAGTTTGTTTACAAATTTCGCAAG
TACTGTAATGTCCCCTTAAGGGCTCTGGTCATAGTGAAAAATCAATTTCA
GAATTTGAAGATAAAACCTTATGTTTTCGCTTCTTTGACATGTTTAAGAA
CAAACTGCTTTTGAAAAAATGAATTTAAGTAATTACATCATGAGTAATTA
AGGAATAAGTGTGACATGGATCTTAATAAAACGTCATAAAGACGCTATTC
ATATACTTTTCACAAAAAAAGCCTAATCTCCTTGGGGAAATCATTTGATT
GTTTCAAACTTTTTTTAAGTTAATGACAAATAATTTCTTTATTCAGATCT
TTTCGGAAAAATTTTTTATTTGGCTACATCCCAAGTTATAGCTGTTTTTG
TATGGAAATTTAGTGGAGAACATTGCCAAAAATGATGTTTTTCGGAGATT
TTAAAGGGAAGATACTTCCACAAAAATTTTCCGAAATTGTATTTTTCGAT
ACTAAATAGATACAACACCTGAACCAAAAAAAACAACAAAATGTTTGATT
TTTACCGAGATTGGGCCTTTGAAAGGTGAAATACTCTTCTTTGAAAAACT
CTTCGTTTTCTTCTTCATTTAATTTTTTCATCTCACTTTTCGATTTTTAA
ATTCTAAAAAGGTAGGTTTAACAGGACATATAAAAAAAGTTATACATTAA
TCTTTTTAAAATGCAGAAATTGCCATTTAAGTTGGTGTAAAATCCAGAGC
CCTTAAATTGTTTTCCAATATACATGTTTCTTCTATTTACAGCCTTGATC
TACCTAAATGCTTGTAAACCCAGCTTTGGAAAATCTTTAGCTTCATTTAT
CTATTTAGGTGTTACTTAGGGTCAGCAAAATTGCAAAAATTTCAACTGTT
ACCCCTCAAAAATCGAAATTTGGTCAAATTAGTACTATTAATGGTTGTAC
AATTTACAAAATCTTCCTATCTTTTCTCCTTGTTAGCCCACGAGGGTCGA
ATATCAGGAGGCACATAAGCATCAGTCCGCAACCTTAGTACTCTCACTTT
TTGACTGTAAAAGTATCTTCACATTCTAAAAGTGTTGCATAGGCTATCAA
CGTAGTAGCGTAGACAAGAGGGGGTGCAAAATTTGTGTAGGAGAACAGAT
TTTCATGACAGTAGTTATATATTGATGATATAAAAAGATGATTACAGTGT
CATAAAAATCTGCTCTCCTGCACAAATTTTGTGCTCCTCTTGTCTACGCT
ACTGCAACGTAAAATATCGATTTTTAACTATATGTAATGATTTGACTCAA
GTTTTCTTTTTTCATTTTTTAATTCTTCTTGAACAGGTTTCAACACACAC
AAATGTGATGCTGAAGGTTTTGAAGATTATGAAGACAATGAAGATGAAAG
TTTTGTCGATATGAAGAANC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036577XLOC_036577Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058022-exon-scaffold_304-1575043694:115713..115874TCONS_00058022-exon-scaffold_304-1575043694:115713..115874Clytia hemisphaericaexon
TCONS_00058022-exon-scaffold_304-1575043694:113655..113738TCONS_00058022-exon-scaffold_304-1575043694:113655..113738Clytia hemisphaericaexon
TCONS_00058022-exon-scaffold_304-1510915933:115713..115874TCONS_00058022-exon-scaffold_304-1510915933:115713..115874Clytia hemisphaericaexon
TCONS_00058022-exon-scaffold_304-1510915933:113655..113738TCONS_00058022-exon-scaffold_304-1510915933:113655..113738Clytia hemisphaericaexon
TCONS_00058022-exon-scaffold_304-1491911889:115713..115874TCONS_00058022-exon-scaffold_304-1491911889:115713..115874Clytia hemisphaericaexon
TCONS_00058022-exon-scaffold_304-1491911889:113655..113738TCONS_00058022-exon-scaffold_304-1491911889:113655..113738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_304supercontigscaffold_304:113655..115874 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.3385	14.3394	12.0245	9.95428	1.10167	0	1.05029	0.983266	6.19567	4.26352	7.4489	3.26441	64.1108	55.8592	2.78327	0.497812	1.22653	1.25715	18.2366	20.9008	6.3188	4.62314	6.5567	0.85157	56.1342	51.664	0	1.19547	0.906724	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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