TCONS_00058046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058046
Unique NameTCONS_00058046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058046 ID=TCONS_00058046|Name=TCONS_00058046|organism=Clytia hemisphaerica|type=transcript|length=506bp
AGAACCCGGACCTCCAGTGCCTGGCACCCCAGGTACTCCTGGACCGCCTG
TTGTTCCAAAGGGACCAGACGGAAAACCACCCAAAGGACCTGATGGAAAA
GTTGTGACACCAACTGGTCCAGATGGAAAACCAGAAGGAGAAAAAGGACC
TGATGGAACACCAACTCCTCCTGATAATGAACAATGTGAGATCGAACCTG
ATGAAAGGAAAGAATGTGGTTACATGGGAATCAAACAACCAGAATGTGAA
AGCAAAGGATGTTGTTGGAGACCATTGGAAAATGGAAGCAAAGCTCCTTG
GTGTTTCTTCCCAGCTAAGAAAGAACCAACTACAATATCTGTGCCCGTCC
CACCGATACCTGGCCCACCAACGCCGTCAAAACCAACTCCTGGTGTCGTC
AACCCTGAGCCAAAACCCAAAGGACCTGATGGTAAAGTTGAGACACCAAC
AGGCCCCAATGGGGAGCCAGAAGGTGAGAAAGGACCTGATGGAAGTCCTA
CACCGC
Run BLAST on NCBI

transcript from alignment at scaffold_304:210270..215223-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058046 ID=TCONS_00058046|Name=TCONS_00058046|organism=Clytia hemisphaerica|type=transcript|length=4954bp|location=Sequence derived from alignment at scaffold_304:210270..215223- (Clytia hemisphaerica)
AGAACCCGGACCTCCAGTGCCTGGCACCCCAGGTACTCCTGGACCGCCTG
TTGTTCCAAAGGGTCCAGACGGAAAACCACCCAAAGGACCTGACGGAAAA
GTTGTGACACCAACTGGTCCAGATGGAAATCCTGAAGGAGAAAAAGGACC
TGATGGAACGCCAACGCCTCCAGATAATGGTAAGAAAGGACTATTTGTTG
ATGTGGATTTTAGGCTAATCCTTTAAAGAGTTTCTGGTGTTCTTAAAAGC
TATTTTTATTCGAAAAATTCGAGTGAAAAATGGAAATAAAACTACTATAG
CTTAAACACTTTGAAGTTGATTTATTCAAGCTAATTTACAGTTCAATTCA
TTGAAACACTTATTCAACCTTTTTAAGAACAATGTGAAATCGAACCTGAC
GAAAGGAAAGAATGTGGTTACATGGGAATCAAACAACCAGAATGTGAAGG
CAAAGGATGTTGTTGGAGACCATTGGAAAATGGAAGCAAAGCTCCTTGGT
GCTTCTTCCCCGCTAAGAAAGGTAAGAATATTAACGATGAACGAGGGGAT
TCTGTTAACTTCTCCATAACAAGGAAATATGAGAGTTTAAAACGAAATTA
GATAAATTTTAATCGATTCAAATTTTCCGTCTGATTCATTTTATTGTGCG
AGTCATTGTCATGTAATGGTTGATTATTATCAAATTTTTTAATATTGCTT
TAAAAGGTGCTTTTAAAATTGCTTTAAATTAATTACCTTAAAGGTAAAGA
AACCAATCTATGAAATATATCGATATCTCGAAAGGAAAAAACACTTTCTT
TTTTTTTTCATTTTTTCAAGAACCTGCTCCACCAAGTCCTTTGGAAGCTA
TATTTATTGACAAAAATATTTTCATTTCCTTATAGAGCCTGGACCACCAG
TTCCAGGACCACCAGGCGTGCCAGGTTCACCAGAAGTTCCAACAGAGCCA
GAGATTCCATACACTTGTAGAGATTTAGCAACAAATATAAACGATGATGG
ACGAGGGAATGCTGTTTATTTAGATCGCCATGATGTCAAGTGTGATGACG
GTAAGACAATTCTGCAGTCCTAGAATGGGCTATTCCAGAAAACATCCTTA
CCCCAACGTCGAGGAGGTGTGACGTCCAGGGGGGTCTGGAAAATTGAAAA
ATCCAGGAAATGCCTTAAAAACAAAGAAAATCCATAGGGGTCAATGAAAA
TGTGTGAAAAACCCAGGGGAGTCCCTGAATTCGGCAAAAATCCAAAATAG
TAGCTCAAAAATTGGCTTAAAAATCCAGAGGGGTCATGAATATTTTGGCA
AAGATCCAGGGGGGTTTGTCCTTCCAAAAATGACCTTCTCAACGTGGGGG
GTAATTTTTTTTTCTGGAGTAGCCCAATTAAAGCTAGAGAGGCCTGAACC
TAAAAGCTATATCAATTAGTGTTAAGCCTTAGACTGTTAACCCGATAATT
TTGTTGCGTGTGTGCTTAGAAATATCTTTTTTTTACAATCAAGAACTAAT
TGATGCCAGTATACCCCAAAGCTATAACAAGGAGATTTTGAAATTTTGGC
TATGAGAGTCTAAAACGAAATTTGTTAAATTTTAATCGATTCAAACTTTT
CATTCNTGTAAAAGATAAGTCCGGTATAGTCAATCTATTCAAATGTGTGA
AGAGATCTTCGTTCAAAACTGGCTCGGGCCTTCGTTTTCACAGCAAACCC
ATCATGCCTAATAGCAAGATGTTGTAAATTTGAAAGTTATAATTTTCTGC
TTATCATCAACCATAGGCGAAGCATTGTCAGGTTTCCATCTCAAACGAAG
TGGAGGAAATAAATACCAAATCACTTACAAATGTTGTAAAACACCAAAAG
CAGGAACACCAACCCCCGTCGATAATCCATTTACTGATGATGGTAGAGGT
GGCCTGGTCTATCTAGACCGACAAGACATCAAGTGTGAAAACAGTTATTT
GAGTACTTTCAAAATGAACAGAAAACCGGGCGGAGGACAATATCGCTTCA
GTTATACATGTTATGATGTTCCTGGCGAGAAACAATGCCAAGCTTTGACC
ACAAAAATGAATGCAGATGGTGGAGGAAACGGCAACACAGTATATCTTGA
TCGTCATGATGTCAAATGTCCTGATCTGCATTTCCTTTCTCGATGGCATT
TGAAACGAGATGGCAAAGGAGACAACGTTCAGTTTGAGTTTACTTGTTGT
AAAGGCTTGCCGCAACCAGGTAAGATCTTTTTCTTTTCTTTTTCAATGTT
TTTGCTTCTGAAACAGAGATCCTGTATTCTATTTCGCGACCGTAGTGCAG
TGGTAGAGCATCCGGCTACGGTGTGCAATGTTATGGGTTCAACTCCCAGC
TGGGTCATACCAAAGATTCACAAAATGGTATTCGATGACTCTCTGCTTGA
TGCTCAGTAATTAATAGAAGGGTCAAGGGTAAGTGAAGCGACCCAGGGAG
AAAGAGTGGCGCCCTCCCCTACCTTCGGATAGATAGCTATCGAAAGAGGA
GCCTTCGGTTCGCCTCCGACTGCCGTTACTAGGTTATTTTCAAAACTCAA
CATAAACGAAAATGATTGGTACCATCTGATATAGCATGACCAACTTAAGA
CCAACTAACTGTCAGCTCTTGTGATTTTGACGTCAAATCTTGTCTTGATC
GTACTGACATCGGTATGTTTTTGAACTTCAAGCGGCTGTATTTCGTTGTG
TGTATTAGTCANGACCAACTTAAGACCAACTAACTGTCAGCTCTTGTGAT
TTTGACGTCAAATCTTGTCTTGATCGTACTGACATCGGTATGTTTTTGAA
CTTCAAGCGGCTGTATTTCTTTGTGTGTATTAGTCAGAGAGTTGTTGTAA
TACATTTTTTTGCTCAGAATTTTATATGCTCTATTAGATGGTACCAATCA
TTTTCGTTTATTTTGACTTTTGAAAATAAGCTATTTCTCTACCCCTTATT
TCTCTTGCAATTTTGCCTATGGCGTCACTATTTTGGTCATAAAAAGTTTT
CCCGGGCTTAATCCGCGTCCTCCCTCTCAAAAATATCTTGTAGTATACTG
TTCTTTGGAAGGGAATAGACTAAAAATGGCTAGGTCGTAGAAACGATGTC
ACGGAACCCAAGGCTTGGCCCCCTACTATTACTACATTATATATATCTAC
AACACATATCCAGTACATTCAGACACTGCTGTCTCACAGCCCCGTAGGTA
TGAAAACTTTTACCGAAATCTCGATGTGGATAAAGGTTCTATTATTCCAC
GCTCAGAAATTCCAGTGGGGATGACTTTGAGCTCAATTTTTCCACTCGGA
ACGGAATTTTGGGCTAATTTTCAATTGCAGTGATGGTCCCACCAAGTCTA
TGACACAGGGATGTACTAAGAGATAGAGTGAACATTCCTGTTCTGCGACA
TAAATTTCATATTTTTCACTACTCATTTTACTATACAGAACCATCACCAG
GCACACCAGGGCCACCAGAAGTCCCGAAAGGACCAGACGGAAAACCACCC
AAAGGACCTGATGGAAAAGTTGTGACACCAACTGGTCCAGATGGAAAACC
AGAAGGAGAAAAAGGACCTGATGGAACACCAACTCCTCCTGATAATGGTG
AGTTCTTTTGAAAAAGTTAAAGCTGTTTCACTTATCTAACTTCAACTTTT
GCACTGCCATTTCTAATTGAGGACAGAGTTGGTAAAAAGTTGACTCTTTT
GACGTTTATGCAATTAATTCTTTTTAACTTTTTTAGCAAAGATTCTAATT
GGTCACTTTCTGCAAACTTTTTGTTTTCTCAAACAATTATTTTCGAGAAA
GTCGACTGTCTAAACTAGAGCTTAACAGAAGATGCATCATCAATTTGTGA
AATAAATAGAATCACAAAGTGTACAAAAGTCCAAAAGAAACTCGAGCCAA
AATAACGAGAAAAAAGAACTAGCTCACATATGTTTTACGGTGCTTCATGA
TGGTGCAATCTTAAGGAAAAGCAGTGTAAATGTAGATTGAGTTTAGTTTT
TATCATCAAGTATAACTTTGTTATCAAAGTTTCGCATTTAAAAAAATTTA
ACCATATTTATTTTAAAACATTAATCATATTCTATAATTCTCCCCGTTTC
AGAACAATGTGAGATCGAACCTGATGAAAGGAAAGAATGTGGTTACATGG
GAATCAAACAACCAGAATGTGAAAGCAAAGGATGTTGTTGGAGACCATTG
GAAAATGGAAGCAAAGCTCCTTGGTGTTTCTTCCCAGCTAAGAAAGGTAA
GAGTGGTAGATTTGTCACAGGGCACCGTTTCTCCAATGTATTTAGCTAAA
GTTTTTTTTAATGCATTTGAAGTATAACAAATGACATAATCATTCGTCTT
TACAATCCAATAAGTTTCGAAGCAAGTATATATTTAAACATTTCAAACAC
GTAAAACATATAGCAAAAAAAGTAGAATGTTGATATTCTTAAATCTGGAT
GGGAAGGGGGCTGTCAGGCGAAATGGCCGACAGATATATGGGTATATGCA
GTCATTAGCAATGACAAGAGAGACGTAAAATTTTTGGAAGAAAGCATTTT
TCTGACACCGTAATTATCTTTTTCTATTATGAAAAATTGTAATAGTGTCA
TAAAAATCCCGGGGNGTCATTAGCAATGACAAGAGAGATGTAAAATTTTT
GGAAGAAAGCATTTTTCTGACACCGTAATTATCTTTTTCTATTATGAAAA
ATTGTAATAGTGTCATAAAAATCCCGGGGTCTTAAATATTAAGTTTACTC
TATTTCATTCTTCTCACACAGAACCAACTACAATATCTGTGCCCGTCCCA
CCGATACCTGGCCCACCAACGCCGTCAAAACCAACTCCTGGTGTCGTCAA
CCCTGAGCCAAAACCCAAAGGACCTGATGGTAAAGTTGAGACACCAACAG
GCCCCAATGGGGAGCCAGAAGGTGAGAAAGGACCTGATGGAAGTCCTACA
CCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036581XLOC_036581Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058046-exon-scaffold_304-1575043694:215162..215223TCONS_00058046-exon-scaffold_304-1575043694:215162..215223Clytia hemisphaericaexon
TCONS_00058046-exon-scaffold_304-1575043694:211627..211743TCONS_00058046-exon-scaffold_304-1575043694:211627..211743Clytia hemisphaericaexon
TCONS_00058046-exon-scaffold_304-1575043694:210978..211121TCONS_00058046-exon-scaffold_304-1575043694:210978..211121Clytia hemisphaericaexon
TCONS_00058046-exon-scaffold_304-1575043694:210270..210452TCONS_00058046-exon-scaffold_304-1575043694:210270..210452Clytia hemisphaericaexon
TCONS_00058046-exon-scaffold_304-1510915933:215162..215223TCONS_00058046-exon-scaffold_304-1510915933:215162..215223Clytia hemisphaericaexon
TCONS_00058046-exon-scaffold_304-1510915933:211627..211743TCONS_00058046-exon-scaffold_304-1510915933:211627..211743Clytia hemisphaericaexon
TCONS_00058046-exon-scaffold_304-1510915933:210978..211121TCONS_00058046-exon-scaffold_304-1510915933:210978..211121Clytia hemisphaericaexon
TCONS_00058046-exon-scaffold_304-1510915933:210270..210452TCONS_00058046-exon-scaffold_304-1510915933:210270..210452Clytia hemisphaericaexon
TCONS_00058046-exon-scaffold_304-1491911889:215162..215223TCONS_00058046-exon-scaffold_304-1491911889:215162..215223Clytia hemisphaericaexon
TCONS_00058046-exon-scaffold_304-1491911889:211627..211743TCONS_00058046-exon-scaffold_304-1491911889:211627..211743Clytia hemisphaericaexon
TCONS_00058046-exon-scaffold_304-1491911889:210978..211121TCONS_00058046-exon-scaffold_304-1491911889:210978..211121Clytia hemisphaericaexon
TCONS_00058046-exon-scaffold_304-1491911889:210270..210452TCONS_00058046-exon-scaffold_304-1491911889:210270..210452Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_304supercontigscaffold_304:210270..215223 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.116486	0	0	0.35406	0	1.00396	0.123698	0	0.550754	0	0.724645	3.34499	2.59406	0	2.13476	0	1.78029	0	0	2.75111	2.5133	0.467134	2.29394	4.68307	0	0.594607	0	0.132584	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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