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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058065 ID=TCONS_00058065|Name=TCONS_00058065|organism=Clytia hemisphaerica|type=transcript|length=1197bp
AAAAGAAAAAGTATCTAACTCAAAAGAAAATCTTAGCCCTGCGGAATTAG
AAGTCTTGATGGATGTGATAGAAAGTGGTTGTATTGCAAAACAAAAAGTG
TTTGCATATGTTGATACATTGTTGTCAACAATCAATCCCTCTGAAGACTT
CAGTGAATGGTCTAAGCCAAAAATACACCCGTGTAAACTTGAATTAGATG
GATTAGGTGATTTTGATGAGGATTATGAAATTTGGTGAACTCagttcaaa
aacatacctgCAATTAAGCTTATTGCTTGAAAAAAGACAAAGATGGGGAT
TTAAAATGtagatttcattttccttttgatGAAATAAGTCAAACCAAAGA
TGGTTCACTAAAATTCAAAGCAGAAATAAGCACGGCTAGAAATGACCCAA
GGATTAATCGTCATCAGCGTGCACAGCTTCAGACTTGGCGTGCCAATACT
GACATCAGTGTTGTCATTGATTATCATATTTGTATGGAGTACTTAACAAA
GTATGATTCAAAACCAGAAAAGTTGAGTGCAGTTGCATCAGATGCAATCA
GTCATGTAGCTTCCAATGCTTCTAAAGAAGCAGATTCATCTTCTCttatt
aagaaaattatgatgcGAGCAGTAGGGAAACGTGATATCAGCATACAAGA
AGTTTGCCACCATTTACTTCAACTAAATTTTTACAGTAGCTCATTCAAAG
TAATAACAGTATCCTTGAGTGGTTcaagaaagttaaaaaactaTGATGGG
CAGATAGTGTCTCAGCCCTCCTTTTTAGATGTGTATGCTAACAGAGCTGA
TTATTCTGCAGACCCAAATGTTTGTAAAgttaattttattgattttcatT
CAAACTATGTTGTTGTCAAAGACTCTCTAGTGAAACGTAAACAAAACTGT
TGTTTTGAGGGTGGTTCTAAGTTTTCCATCCTGTCCCAAAAATAACAACT
ACCCACTTTATTGTAAAACTAATTTGATCAAATACAAGGTTTGGTCCAGA
GATATAAATATTTTATGGGGTACTGAAAATCCATCGGAGGCGATTTTTTT
GAATGCATGGGCAGAATTCTATCAGTCAGATGTCGCTGAAACTGTTGTTC
CAAAACATATTCAAGAGCTTGAAAATGTAGAAAATTCAGTCTTCTTTGAA
AGTTCCAGCGATGAGGAATCTGAACCTGAAGAAAGTTTGGAAAGAGA Run BLAST on NCBI protein sequence of TCONS_00058065-protein >TCONS_00058065-protein ID=TCONS_00058065-protein|Name=TCONS_00058065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MEYLTKYDSKPEKLSAVASDAISHVASNASKEADSSSLIKKIMMRAVGKR
DISIQEVCHHLLQLNFYSSSFKVITVSLSGSRKLKNYDGQIVSQPSFLDV
YANRADYSADPNVCKVNFIDFHSNYVVVKDSLVKRKQNCCFEGGSKFSIL
SQK Run BLAST on NCBI transcript from alignment at scaffold_304:34623..35819 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058065 ID=TCONS_00058065|Name=TCONS_00058065|organism=Clytia hemisphaerica|type=transcript|length=1197bp|location=Sequence derived from alignment at scaffold_304:34623..35819 (Clytia hemisphaerica)
TCTCTTTCCAAACTTTCTTCAGGTTCAGATTCCTCATCGCTGGAACTTTC
AAAGAAGACTGAATTTTCTACATTTTCAAGCTCTTGAATATGTTTTGGAA
CAACAGTTTCAGCGACATCTGACTGATAGAATTCTGCCCATGCATTCAAA
AAAATCGCCTCCGATGGATTTTCAGTACCCCATAAAATATTTATATCTCT
GGACCAAACCTTGTATTTGATCAAATTAGTTTTACAATAAAGTGGGTAGT
TGTTATTTTTGGGACAGGATGGAAAACTTAGAACCACCCTCAAAACAACA
GTTTTGTTTACGTTTCACTAGAGAGTCTTTGACAACAACATAGTTTGAat
gaaaatcaataaaattaacTTTACAAACATTTGGGTCTGCAGAATAATCA
GCTCTGTTAGCATACACATCTAAAAAGGAGGGCTGAGACACTATCTGCCC
ATCAtagttttttaactttcttgAACCACTCAAGGATACTGTTATTACTT
TGAATGAGCTACTGTAAAAATTTAGTTGAAGTAAATGGTGGCAAACTTCT
TGTATGCTGATATCACGTTTCCCTACTGCTCgcatcataattttcttaat
aaGAGAAGATGAATCTGCTTCTTTAGAAGCATTGGAAGCTACATGACTGA
TTGCATCTGATGCAACTGCACTCAACTTTTCTGGTTTTGAATCATACTTT
GTTAAGTACTCCATACAAATATGATAATCAATGACAACACTGATGTCAGT
ATTGGCACGCCAAGTCTGAAGCTGTGCACGCTGATGACGATTAATCCTTG
GGTCATTTCTAGCCGTGCTTATTTCTGCTTTGAATTTTAGTGAACCATCT
TTGGTTTGACTTATTTCatcaaaaggaaaatgaaatctaCATTTTAAATC
CCCATCTTTGTCTTTTTTCAAGCAATAAGCTTAATTGcaggtatgttttt
gaactGAGTTCACCAAATTTCATAATCCTCATCAAAATCACCTAATCCAT
CTAATTCAAGTTTACACGGGTGTATTTTTGGCTTAGACCATTCACTGAAG
TCTTCAGAGGGATTGATTGTTGACAACAATGTATCAACATATGCAAACAC
TTTTTGTTTTGCAATACAACCACTTTCTATCACATCCATCAAGACTTCTA
ATTCCGCAGGGCTAAGATTTTCTTTTGAGTTAGATACTTTTTCTTTT Coding sequence (CDS) from alignment at scaffold_304:34623..35819 >TCONS_00058065 ID=TCONS_00058065|Name=TCONS_00058065|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_304:34623..35819 (Clytia hemisphaerica)
TTATTTTTGGGACAGGATGGAAAACTTAGAACCACCCTCAAAACAACAGT
TTTGTTTACGTTTCACTAGAGAGTCTTTGACAACAACATAGTTTGAatga
aaatcaataaaattaacTTTACAAACATTTGGGTCTGCAGAATAATCAGC
TCTGTTAGCATACACATCTAAAAAGGAGGGCTGAGACACTATCTGCCCAT
CAtagttttttaactttcttgAACCACTCAAGGATACTGTTATTACTTTG
AATGAGCTACTGTAAAAATTTAGTTGAAGTAAATGGTGGCAAACTTCTTG
TATGCTGATATCACGTTTCCCTACTGCTCgcatcataattttcttaataa
GAGAAGATGAATCTGCTTCTTTAGAAGCATTGGAAGCTACATGACTGATT
GCATCTGATGCAACTGCACTCAACTTTTCTGGTTTTGAATCATACTTTGT
TAAGTACTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058065-exon-scaffold_304-1491911889:34623..35819 | TCONS_00058065-exon-scaffold_304-1491911889:34623..35819 | Clytia hemisphaerica | exon |
| TCONS_00058065-exon-scaffold_304-1510915933:34623..35819 | TCONS_00058065-exon-scaffold_304-1510915933:34623..35819 | Clytia hemisphaerica | exon |
| TCONS_00058065-exon-scaffold_304-1575043694:34623..35819 | TCONS_00058065-exon-scaffold_304-1575043694:34623..35819 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_304 | supercontig | scaffold_304:34623..35819 . |
Blast
The following BLAST results are available for this feature:
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