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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058070 ID=TCONS_00058070|Name=TCONS_00058070|organism=Clytia hemisphaerica|type=transcript|length=4200bpRun BLAST on NCBI protein sequence of TCONS_00058070-protein >TCONS_00058070-protein ID=TCONS_00058070-protein|Name=TCONS_00058070-protein|organism=Clytia hemisphaerica|type=polypeptide|length=806bp LKTFRNKIYLFLVHKKPLQENECAAISHGALSGLAFLHQNNRIHRDIKAGRun BLAST on NCBI transcript from alignment at scaffold_305:3203..12716+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058070 ID=TCONS_00058070|Name=TCONS_00058070|organism=Clytia hemisphaerica|type=transcript|length=9514bp|location=Sequence derived from alignment at scaffold_305:3203..12716+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_305:3203..12716+ >TCONS_00058070 ID=TCONS_00058070|Name=TCONS_00058070|organism=Clytia hemisphaerica|type=CDS|length=38736bp|location=Sequence derived from alignment at scaffold_305:3203..12716+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058070 vs. Swiss-Prot (Human)
Match: TAOK3 (Serine/threonine-protein kinase TAO3 OS=Homo sapiens GN=TAOK3 PE=1 SV=2) HSP 1 Score: 315.079 bits (806), Expect = 2.082e-90 Identity = 144/211 (68.25%), Postives = 163/211 (77.25%), Query Frame = 1
Query: 28 LFLVHKKPLQENECAAISHGALSGLAFLHQNNRIHRDIKAGNILLSEKGIVKLADFGSASMKSPANSFVGTPYWMSPEVILAMDEGQYDGKVDIWSLGITCIELAERKPPLFNMNAMSALYHIAQNDPPQLNMDNANWSTEFSVFIAKCLSKQPGGRPCADELLKEPFITRRRPPNTILDLIDRTKNQVRELDTDNYNRITRIIMNEEVDG 660
L VHKKPLQE E AAI+HGAL GLA+LH + IHRDIKAGNILL+E G VKLADFGSASM SPANSFVGTPYWM+PEVILAMDEGQYDGKVDIWSLGITCIELAERKPPLFNMNAMSALYHIAQND P L + W+ F F+ CL K P RP + ELL+ F+ R RP ++DLI RTK+ VRELD Y ++ +I+ E +G
Sbjct: 111 LLEVHKKPLQEVEIAAITHGALHGLAYLHSHALIHRDIKAGNILLTEPGQVKLADFGSASMASPANSFVGTPYWMAPEVILAMDEGQYDGKVDIWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLQSN--EWTDSFRRFVDYCLQKIPQERPTSAELLRHDFVRRDRPLRVLIDLIQRTKDAVRELDNLQYRKMKKILFQETRNG 319 HSP 2 Score: 272.322 bits (695), Expect = 9.530e-76 Identity = 175/450 (38.89%), Postives = 271/450 (60.22%), Query Frame = 1
Query: 883 DRFATLRPAQFVRRQMQEH-KSDAYREQLQVYKRLRQQHQKLIVQLEQRQQGDMYGHRKNLEREFENQMHNFDKQMESLKIKHRQELESKTKTGMDDEKKLLRLIKDQQDGELKEVSIQLKNDYKKAKQQLKQDEQLRRASVTSSQLKEQYNQHTKQQEMLKASEHVHM-------REEELRNFRRDQLIGRQHTERSLLIEEMNTLQSQKDQAHRMLLRHHECTQKLEYKQLKGMHQLREDQQSHLHETERDNQTEYNKKAEMDLQKKHLLELRQRPKTLKAQELKVKKQFHEACKTQERQYKVLKKEMLAREPREKHAEIIQKCKEDRVRKFADLGTQYEQSISDLLQKQKVRLDEIQLTELEALRAQLKQEEEVLNTYQARQSKHLKNHIEREMDELKGRVTLRRELLEQRMVEESTRLQDIRLERLQDLQTRHSKELKDFETVSRR 2208
+RFAT++ A V RQ+ EH + + REQ+ YKR+R+QHQK ++ LE + + +M HR L++E E +N ++E L K +E + K DEKK + I QQ +L K YK K+++K +E S + +E+ ++H + + +A E H+ ++ R F+R +I R E+ + EE+N ++QK+ H ML+RH E T++LEY+QL + +LR D H+TE +NQ EYNK+ E +L +KH++ELRQ+PK LKA E+++KKQF + CK Q +QYK LK L P+ +H I++ K+++ RK A L QYEQSI++++ Q +RLDE Q E +ALR QL+QE E+LN YQ++ + ERE+ +L+ RV+LRR LEQ++ EE LQ R ER+++L R +E++ F+ S R
Sbjct: 433 ERFATIKSASLVTRQIHEHEQENELREQMSGYKRMRRQHQKQLIALENKLKAEMDEHRLKLQKEVETHANNSSIELEKLAKKQVAIIEKEAKVAAADEKKFQQQILAQQKKDLTTFLESQKKQYKICKEKIK-EEMNEDHSTPKKEKQERISKHKENLQHTQAEEEAHLLTQQRLYYDKNCRFFKRKIMIKRHEVEQQNIREELNKKRTQKEMEHAMLIRHDESTRELEYRQLHTLQKLRMDLIRLQHQTELENQLEYNKRRERELHRKHVMELRQQPKNLKAMEMQIKKQFQDTCKVQTKQYKALKNHQLEVTPKNEHKTILKTLKDEQTRKLAILAEQYEQSINEMMASQALRLDEAQEAECQALRLQLQQEMELLNAYQSKIKMQTEAQHERELQKLEQRVSLRRAHLEQKIEEELAALQKERSERIKNLLERQEREIETFDMESLR 881 The following BLAST results are available for this feature:
BLAST of TCONS_00058070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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