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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058076 ID=TCONS_00058076|Name=TCONS_00058076|organism=Clytia hemisphaerica|type=transcript|length=2624bp
CTTTACTAATTAGAAAAGTATCAGTTGCCATTTATGTTCACTGTTTGAAA
TATGGCATGTTAGCCTCAAAAGGCCATGCCGTTGCTATTCCctcaaattt
aaagattttcaccaaattacCTCAATTACCCTCTGAAATAGGCATTCTTT
TGATCAAGAGTGGTAATGATAGCTCACAAGCCTATATGGCTTCAAGACAG
AGAATACAAGAGGCACTTAACGGTTTAATCTTTGGTTATCCAATATTTGG
TTTAGATAATCCTCAACCTGGTTATACCCAATATCAGGGTAGAGATCATA
TATCTGGTAGAATTTTaaagggaaaatattttttgtatgaGCCTAATTCG
TATTATTTTGATGTTAATATTGACAATGACCGTCTCCTAAATATTCCTGA
GCATCATGGAATTATTGAAGGCCTTCCTATTGTTTCTAAGGGTAATAGTG
CTACAGAAAACTCTGAGGAAGACAGAGGCCCAGCCCCTGGCCAGTTTGAA
AAACTTGCTGTAGATGAAGAATTGACAACTTCTTCTGGATTTGCAGCCCA
ACTTAAAAATTCTGATGCTGATGAGAACATTAAAAATGCATTACGTTCAT
TCCTTGGGGAGAATACTAATATTGAAGAATTTATTGCAGCAGGTGGTGTA
GCAGATGTTGGGAAACTATATGAAAACAATAGAAGAGATAAACCTATTCC
TGAACTCTCGACAGAAGGATTTTTTACCATGTGCTATCCCCATATATTTA
TTAATGGGTCATGTGATTATACCATCAAGGCTGCAcggaatttgaaattt
gaggaATGGATAGAGCATATCTATTATTGTAAAGATAACAGAGCGCCTGT
ACACAGATTCCTAAAATTTCATCTTATGAATATTAATTTGCGTCAAAAGG
CTTTAAATCAATGAAGTTTTTGTGTTAATCaacaaataaatgaaaaacat
cTAACAAGGGATGAATTACTATATCTATGGGGGCTAACCTTGTTGACACA
GCCCCATATTGGCGAGAGAGAAAACATGAGTTGGATTCTCTTTGTTTCTT
TATGTTAAAAGAAAACAATGTTTATCCGACTTACTTTGATACCAATAGTT
GTGCAGAGCACCATTGGGTGCCTCTACACAATCTTTTGATCAAATACCTT
TCCCAAATAAATGGAGAACCAGAAAATGATATGAGAGCTAAATTCAATAG
TGATTCTAGGTTCCGCCACCAAGCCATTTTGCAGAATCAACATATTATTA
CAACATATTTTGATGTGAGACATAACAATTATAAAGAAACAGTGTTAAAG
GAGTTGTTCCAATATGATGAGTGTTGAAGTAGATATGAATTTGCTAAATC
ACGTGGACAAATTCATTCACACTCCTTATATTTCCCTAACTCGCACTATA
ATATTGCCAAAGCAATATTAGCACAAGATGAAAATGATCCATGAGTTAAT
ATTGCTAAGGATCTAGAAAGATGGTTGCAAACAAATGAATTGAATGAAGA
AAATGTCTTCTCACCTCAATTTGTTTCTATGCATCCAGCTGGAGGTCAGG
AAAAAAACTTTGATGATAAACCATCAGAATGGATtccaaacaaagaaaat
tggcCTCAACCTCATGGAACGTTATCTAACATTGACAAAGATATATTAAA
AAAATGCCTGCTATGTCAAGGAAACCAAGAGGAACTTAAATCTTTTCATA
TCAATGTAGTTAACAAGGTTTTGTTACATTCATGTAGTTCATATTGTCTC
AGACGTAAAACTATTACcaccaaagaaaaaaatcaaaatggtcaACCGAT
TGAGGAAGTCATTAGATATTGTAGACATCATTTTGGTAAGTTTGATGAGG
AAATTAAAACATCCATGGGAAAAGAAACAAATCCTTTCACTCCTAGACTA
ACTAAAGGTGAAATACAAAGATATGAAGGGAGAAATGATCATCCTCGGAT
GGTTCAGCACATATTGCTTAGATCATTATCTTGGCTTGCCCAATGTGATA
CCCAAACCCTTGTAACAGATGATTTGTTAGCCTTGATAAAGTACATTACA
GGATACTGTTGTAAAGGTAATTCTAGTACCGAGGAGCTCCTTGGTATCTA
CAAACAAATTCTCAACAAAGCAGACCCAACAATATCACTACAGTCAGTAG
CTCAAaggttgattttgaaaacagtTGGGAATGTTGATACCCCATCGTCA
GCTGCTAACTTCATAAATGTTAAAGGTAAATTATATAATTGTAGTCGGAG
ATTTAAGAGAATTGGACTGAGTGGATTTAGACTATTTGACCCAAAGGCCA
AAAATGGTGAGGTCACTAAACAGAACACCTTAGACAAATTTCTTAGTGAT
ACCAGAAGAGAACAAAATCCTAACATTAGTTTGTTTGACTGGGCAAAAAA
GTGTGATTGTCCCAAAAGAACATCGTGTGGAATAGACCATGTTCCTGTGT
TTACAGGCTGTCAACGCTTTTGGATTTGGCCAACAGGTGAAGTCTTTTCA
AGAGAGCTTTTGATGACATTTCATCCTGGTACTTGGAGAAATGTTGAAGA
TCTGAAAAATGGCTTTGAAACATACACCGAATCCTTTGCTCATTTCTTAG
ATACAGATTATTGTCCAGAGTCTG Run BLAST on NCBI protein sequence of TCONS_00058076-protein >TCONS_00058076-protein ID=TCONS_00058076-protein|Name=TCONS_00058076-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MHPAGGQEKNFDDKPSEWIPNKENWPQPHGTLSNIDKDILKKCLLCQGNQ
EELKSFHINVVNKVLLHSCSSYCLRRKTITTKEKNQNGQPIEEVIRYCRH
HFGKFDEEIKTSMGKETNPFTPRLTKGEIQRYEGRNDHPRMVQHILLRSL
SWLAQCDTQTLVTDDLLALIKYITGYCCKGNSSTEELLGIYKQILNKADP
TISLQSVAQRLILKTVGNVDTPSSAANFINVKGKLYNCSRRFKRIGLSGF
RLFDPKAKNGEVTKQNTLDKFLSDTRREQNPNISLFDWAKKCDCPKRTSC
GIDHVPVFTGCQRFWIWPTGEVFSRELLMTFHPGTWRNVEDLKNGFETYT
ESFAHFLDTDYCPES Run BLAST on NCBI transcript from alignment at scaffold_305:223592..226276+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058076 ID=TCONS_00058076|Name=TCONS_00058076|organism=Clytia hemisphaerica|type=transcript|length=2685bp|location=Sequence derived from alignment at scaffold_305:223592..226276+ (Clytia hemisphaerica)
CTTTACTAATTAGAAAAGTATCAGTTGCCATTTATGTTCACTGTTTGAAA
TATGGCATGTTAGCCTCAAAAGGCCATGCCGTTGCTATTCCctcaaattt
aaagattttcaccaaattacCTCAATTACCCTCTGAAATAGGCATTCTTT
TGATCAAGAGTGGTAATGATAGCTCACAAGCCTATATGGCTTCAAGACAG
AGAATACAAGAGGCACTTAACGGTTTAATCTTTGGTTATCCAATATTTGG
TTTAGATAATCCTCAACCTGGTTATACCCAATATCAGGGTAGAGATCATA
TATCTGGTAGAATTTTaaagggaaaatattttttgtatgaGCCTAATTCG
TATTATTTTGATGTTAATATTGACAATGACCGTCTCCTAAATATTCCTGA
GCATCATGGAATTATTGAAGGCCTTCCTATTGTTTCTAAGGGTAATAGTG
CTACAGAAAACTCTGAGGAAGACAGAGGCCCAGCCCCTGGCCAGTTTGAA
AAACTTGCTGTAGATGAAGAATTGACAACTTCTTCTGGATTTGCAGCCCA
ACTTAAAAATTCTGATGCTGATGAGAACATTAAAAATGCATTACGTTCAT
TCCTTGGGGAGAATACTAATATTGAAGAATTTATTGCAGCAGGTGGTGTA
GCAGATGTTGGGAAACTATATGAAAACAATAGAAGAGATAAACCTATTCC
TGAACTCTCGACAGAAGGATTTTTTACCATGTGCTATCCCCATATATTTA
TTAATGGGTCATGTGATTATACCATCAAGGCTGCAcggaatttgaaattt
gaggaATGGATAGAGCATATCTATTATTGTAAAGATAACAGAGCGCCTGT
ACACAGATTCCTAAAATTTCATCTTATGAATATTAATTTGCGTCAAAAGG
CTTTAAATCAATGAAGTTTTTGTGTTAATCaacaaataaatgaaaaacat
cTAACAAGGGATGAATTACTATATCTATGGGGGCTAACCTTGTTGACACA
GCCCCATATTGGCGAGAGAGAAAACATGAGTTGGATTCTCTTTGTTTCTT
TATGTTAAAAGAAAACAATGTTTATCCGACTTACTTTGATACCAATAGTT
GTGCAGAGCACCATTGGGTGCCTCTACACAATCTTTTGATCAAATACCTT
TCCCAAATAAATGGAGAACCAGAAAATGATATGAGAGCTAAATTCAATAG
TGATTCTAGGTTCCGCCACCAAGCCATTTTGCAGAATCAACATATTATTA
CAACATATTTTGATGTGAGACATAACAATTATAAAGAAACAGTGTTAAAG
GAGTTGTTCCAATATGATGAGTGTTGAAGTAGATATGAATTTGCTAAATC
ACGTGGACAAATTCATTCACACTCCTTATATTTCCCTAACTCGCACTATA
ATATTGCCAAAGCAATATTAGCACAAGATGAAAATGATCCATGAGTTAAT
ATTGCTAAGGATCTAGAAAGATGGTTGCAAACAAATGAATTGAATGAAGA
AAATGTCTTCTCACCTCAATTTGTTTCTATGCATCCAGCTGGAGGTCAGG
AAAAAAACTTTGATGATAAACCATCAGAATGGATtccaaacaaagaaaat
tggcCTCAACCTCATGGAACGTTATCTAACATTGACAAAGATATATTAAA
AAAATGCCTGCTATGTCAAGGAAACCAAGAGGAACTTAAATCTTTTCATA
TCAATGTAGTTAACAAGGTTTTGTTACATTCATGTAGTTCATATTGTCTC
AGACGTAAAACTATTACcaccaaagaaaaaaatcaaaatggtcaACCGAT
TGAGGAAGTCATTAGATATTGTAGACATCATTTTGGNAAAAAATCCAAAT
GGTCAACCGATTGAGGAAGTCATTAGATATTGTAGACATCATTTTGGTAA
GTTTGATGAGGAAATTAAAACATCCATGGGAAAAGAAACAAATCCTTTCA
CTCCTAGACTAACTAAAGGTGAAATACAAAGATATGAAGGGAGAAATGAT
CATCCTCGGATGGTTCAGCACATATTGCTTAGATCATTATCTTGGCTTGC
CCAATGTGATACCCAAACCCTTGTAACAGATGATTTGTTAGCCTTGATAA
AGTACATTACAGGATACTGTTGTAAAGGTAATTCTAGTACCGAGGAGCTC
CTTGGTATCTACAAACAAATTCTCAACAAAGCAGACCCAACAATATCACT
ACAGTCAGTAGCTCAAaggttgattttgaaaacagtTGGGAATGTTGATA
CCCCATCGTCAGCTGCTAACTTCATAAATGTTAAAGGTAAATTATATAAT
TGTAGTCGGAGATTTAAGAGAATTGGACTGAGTGGATTTAGACTATTTGA
CCCAAAGGCCAAAAATGGTGAGGTCACTAAACAGAACACCTTAGACAAAT
TTCTTAGTGATACCAGAAGAGAACAAAATCCTAACATTAGTTTGTTTGAC
TGGGCAAAAAAGTGTGATTGTCCCAAAAGAACATCGTGTGGAATAGACCA
TGTTCCTGTGTTTACAGGCTGTCAACGCTTTTGGATTTGGCCAACAGGTG
AAGTCTTTTCAAGAGAGCTTTTGATGACATTTCATCCTGGTACTTGGAGA
AATGTTGAAGATCTGAAAAATGGCTTTGAAACATACACCGAATCCTTTGC
TCATTTCTTAGATACAGATTATTGTCCAGAGTCTG Coding sequence (CDS) from alignment at scaffold_305:223592..226276+ >TCONS_00058076 ID=TCONS_00058076|Name=TCONS_00058076|organism=Clytia hemisphaerica|type=CDS|length=2190bp|location=Sequence derived from alignment at scaffold_305:223592..226276+ (Clytia hemisphaerica)
ATGCATCCAGCTGGAGGTCAGGAAAAAAACTTTGATGATAAACCATCAGA
ATGGATtccaaacaaagaaaattggcCTCAACCTCATGGAACGTTATCTA
ACATTGACAAAGATATATTAAAAAAATGCCTGCTATGTCAAGGAAACCAA
GAGGAACTTAAATCTTTTCATATCAATGTAGTTAACAAGGTTTTGTTACA
TTCATGTAGTTCATATTGTCTCAGACGTAAAACTATTACcaccaaagaaa
aaaatcaaaatggtcaACCGATTGAGGAAGTCATTAGATATTGTAGACAT
CATTTTGGTAAGTTTGATGAGGAAATTAAAACATCCATGGGAAAAGAAAC
AAATCCTTTCACTCCTAGACTAACTAAAGGTGAAATACAAAGATATGAAG
GGAGAAATGATCATCCTCGGATGGTTCAGCACATATTGCTTAGATCATTA
TCTTGGCTTGCCCAATGTGATACCCAAACCCTTGTAACAGATGATTTGTT
AGCCTTGATAAAGTACATTACAGGATACTGTTGTAAAGGTAATTCTAGTA
CCGAGGAGCTCCTTGGTATCTACAAACAAATTCTCAACAAAGCAGACCCA
ACAATATCACTACAGTCAGTAGCTCAAaggttgattttgaaaacagtTGG
GAATGTTGATACCCCATCGTCAGCTGCTAACTTCATAAATGTTAAAGGTA
AATTATATAATTGTAGTCGGAGATTTAAGAGAATTGGACTGAGTGGATTT
AGACTATTTGACCCAAAGGCCAAAAATGGTGAGGTCACTAAACAGAACAC
CTTAGACAAATTTCTTAGTGATACCAGAAGAGAACAAAATCCTAACATTA
GTTTGTTTGACTGGGCAAAAAAGTGTGATTGTCCCAAAAGAACATCGTGT
GGAATAGACCATGTTCCTGTGTTTACAGGCTGTCAACGCTTTTGGATTTG
GCCAACAGGTGAAGTCTTTTCAAGAGAGCTTTTGATGACATTTCATCCTG
GTACTTGGAGAAATGTTGAAGATCTGAAAAATGGCTTTGAAACATACACC
GAATCCTTTGCTCATTTCTTAGATACAGATTATTGTCCAGAGTCTATGCA
TCCAGCTGGAGGTCAGGAAAAAAACTTTGATGATAAACCATCAGAATGGA
TtccaaacaaagaaaattggcCTCAACCTCATGGAACGTTATCTAACATT
GACAAAGATATATTAAAAAAATGCCTGCTATGTCAAGGAAACCAAGAGGA
ACTTAAATCTTTTCATATCAATGTAGTTAACAAGGTTTTGTTACATTCAT
GTAGTTCATATTGTCTCAGACGTAAAACTATTACcaccaaagaaaaaaat
caaaatggtcaACCGATTGAGGAAGTCATTAGATATTGTAGACATCATTT
TGGTAAGTTTGATGAGGAAATTAAAACATCCATGGGAAAAGAAACAAATC
CTTTCACTCCTAGACTAACTAAAGGTGAAATACAAAGATATGAAGGGAGA
AATGATCATCCTCGGATGGTTCAGCACATATTGCTTAGATCATTATCTTG
GCTTGCCCAATGTGATACCCAAACCCTTGTAACAGATGATTTGTTAGCCT
TGATAAAGTACATTACAGGATACTGTTGTAAAGGTAATTCTAGTACCGAG
GAGCTCCTTGGTATCTACAAACAAATTCTCAACAAAGCAGACCCAACAAT
ATCACTACAGTCAGTAGCTCAAaggttgattttgaaaacagtTGGGAATG
TTGATACCCCATCGTCAGCTGCTAACTTCATAAATGTTAAAGGTAAATTA
TATAATTGTAGTCGGAGATTTAAGAGAATTGGACTGAGTGGATTTAGACT
ATTTGACCCAAAGGCCAAAAATGGTGAGGTCACTAAACAGAACACCTTAG
ACAAATTTCTTAGTGATACCAGAAGAGAACAAAATCCTAACATTAGTTTG
TTTGACTGGGCAAAAAAGTGTGATTGTCCCAAAAGAACATCGTGTGGAAT
AGACCATGTTCCTGTGTTTACAGGCTGTCAACGCTTTTGGATTTGGCCAA
CAGGTGAAGTCTTTTCAAGAGAGCTTTTGATGACATTTCATCCTGGTACT
TGGAGAAATGTTGAAGATCTGAAAAATGGCTTTGAAACATACACCGAATC
CTTTGCTCATTTCTTAGATACAGATTATTGTCCAGAGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058076-exon-scaffold_305-1491911889:223592..225417 | TCONS_00058076-exon-scaffold_305-1491911889:223592..225417 | Clytia hemisphaerica | exon |
| TCONS_00058076-exon-scaffold_305-1510915933:223592..225417 | TCONS_00058076-exon-scaffold_305-1510915933:223592..225417 | Clytia hemisphaerica | exon |
| TCONS_00058076-exon-scaffold_305-1575043694:223592..225417 | TCONS_00058076-exon-scaffold_305-1575043694:223592..225417 | Clytia hemisphaerica | exon |
| TCONS_00058076-exon-scaffold_305-1491911889:225479..226276 | TCONS_00058076-exon-scaffold_305-1491911889:225479..226276 | Clytia hemisphaerica | exon |
| TCONS_00058076-exon-scaffold_305-1510915933:225479..226276 | TCONS_00058076-exon-scaffold_305-1510915933:225479..226276 | Clytia hemisphaerica | exon |
| TCONS_00058076-exon-scaffold_305-1575043694:225479..226276 | TCONS_00058076-exon-scaffold_305-1575043694:225479..226276 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_305 | supercontig | scaffold_305:223592..226276 + |
Blast
The following BLAST results are available for this feature:
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