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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058077 ID=TCONS_00058077|Name=TCONS_00058077|organism=Clytia hemisphaerica|type=transcript|length=1282bp
AAGGACAAGAAGGGCGTCCACGTAGTTGGTTCTGCTGCATGGGGCTTCAT
TCCTGATCTTCCAAGTGCTGTAGTCACCTTTGTGAACAATACGTAATGAT
ACGTAAGTCTTCCTGAAGAAAAAGGACATTTTTtatgaaagaaaatatat
aaatgGTAAATATCTTGAAATTCTCTAAtgtctaaaattcaaaaagagcT
TTTGAAAATCAGGTACAAATATTTATGTTTAGGGAAGGCAGATTGGTACA
TCATCCACAGATGGATGATGAAATTCATATCAAGATTGGCGGTGACCATG
GAGGAAAGTCGTTCAAAGCCTGTTATCAAGTCTGCAACACTGTGAATCCT
AACAGCAAGGACAATACAGTTGTATTTTCCTTGTTTGAAGCAAAGGATAA
ACGTCCAAACCTACGAACAGGTCTCAGTATGTTTACGAGTCAGGTTGACC
AATTGCAAGAAATGAAATGGAAGTGAGTCTTTAACAATATTTCTATCTGT
TTAAagcaaatttgatatttcagaAAACTCGCAGCTTTAAAATTGGATTC
CCCAGGAGACCTTATGAATCAAATTCTCATCTCAATCATTACAGAGAGCC
GGTCCAAAacaataatcaaaattttgagactATAAATTTCTTTTACAGTG
ATCACCCCTTTACTGGTGACTATGAGTTTTTGTGTGCAGCTTATGGGTTG
ACAGGAGCAAGTGGTAAGTATTAACCTGTATTAACTATTATTAACTGTAA
AAGCCCAATTTCAATTGTCCaccatgaaaatcttttttgtttcatcaACA
AATTATGTGTACAactaaagtttttcttttttcaggaaaGTACCCATGCT
TGTTGTGTGACATCAAACAATCTGATCTAAAAATTCCCAAAGACGAACGC
TACAACAAGCCAAGAGCACTTGCCTCTTTGGATGAAAATCTGAAGAAATT
TGTAGAGACCTACAAGGGAGATCTGAAACATGCAAAATTGTGTAAAAACG
TGATAGGAAAACGATTATTCAACATTCCACTTGATCAGGTAACTAGAATT
CTTTTTGCTAGCCCATCGAAGGGAACAAAACCAAAGAGCCCTTAGTTTGA
GTAAACAAagatatttttgccaaattctgaaaaaagtatattgaaattct
cTTTAGGTTGCACTGCCAGCTCTCCATATATCGTTGGGAaccttcaaaaa
gtttttcaatctaTTGGAAAAAACTGTGAGGTGAGCATtggtaacttttt
attttccttgatgcgtaaaAGAAGGATTAAAG Run BLAST on NCBI transcript from alignment at scaffold_305:227709..229042+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058077 ID=TCONS_00058077|Name=TCONS_00058077|organism=Clytia hemisphaerica|type=transcript|length=1334bp|location=Sequence derived from alignment at scaffold_305:227709..229042+ (Clytia hemisphaerica)
AAGGACAAGAAGGGCGTCCACGTAGTTGGTTCTGCTGCATGGGGCTTCAT
TCCTGATCTTCCAAGTGCTGTAGTCACCTTTGTGAACAATACGTAATGAT
ACGTAAGTCTTCCTGAAGAAAAAGGACATTTTTtatgaaagaaaatatat
aaatgGTAAATATCTTGAAATTCTCTAAtgtctaaaattcaaaaagagcT
TTTGAAAATCAGGTACAAATATTTATGTTTAGGGAAGGCAGATTGGTACA
TCATCCACAGATGGATCATGAAATTCATATCAAGATTGGCGGTGACNGTA
CATCATCCACAGATGGATGATGAAATTCATATCAAGATTGGCGGTGACCA
TGGAGGAAAGTCGTTCAAAGCCTGTTATCAAGTCTGCAACACTGTGAATC
CTAACAGCAAGGACAATACAGTTGTATTTTCCTTGTTTGAAGCAAAGGAT
AAACGTCCAAACCTACGAACAGGTCTCAGTATGTTTACGAGTCAGGTTGA
CCAATTGCAAGAAATGAAATGGAAGTGAGTCTTTAACAATATTTCTATCT
GTTTAAagcaaatttgatatttcagaAAACTCGCAGCTTTAAAATTGGAT
TCCCCAGGAGACCTTATGAATCAAATTCTCATCTCAATCATTACAGAGAG
CCGGTCCAAAacaataatcaaaattttgagactATAAATTTCTTTTACAG
TGATCACCCCTTTACTGGTGACTATGAGTTTTTGTGTGCAGCTTATGGGT
TGACAGGAGCAAGTGGTAAGTATTAACCTGTATTAACTATTATTAACTGT
AAAAGCCCAATTTCAATTGTCCaccatgaaaatcttttttgtttcatcaA
CAAATTATGTGTACAactaaagtttttcttttttcaggaaaGTACCCATG
CTTGTTGTGTGACATCAAACAATCTGATCTAAAAATTCCCAAAGACGAAC
GCTACAACAAGCCAAGAGCACTTGCCTCTTTGGATGAAAATCTGAAGAAA
TTTGTAGAGACCTACAAGGGAGATCTGAAACATGCAAAATTGTGTAAAAA
CGTGATAGGAAAACGATTATTCAACATTCCACTTGATCAGGTAACTAGAA
TTCTTTTTGCTAGCCCATCGAAGGGAACAAAACCAAAGAGCCCTTAGTTT
GAGTAAACAAagatatttttgccaaattctgaaaaaagtatattgaaatt
ctcTTTAGGTTGCACTGCCAGCTCTCCATATATCGTTGGGAaccttcaaa
aagtttttcaatctaTTGGAAAAAACTGTGAGGTGAGCATtggtaacttt
ttattttccttgatgcgtaaaAGAAGGATTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058077-exon-scaffold_305-1491911889:227709..227957 | TCONS_00058077-exon-scaffold_305-1491911889:227709..227957 | Clytia hemisphaerica | exon |
| TCONS_00058077-exon-scaffold_305-1510915933:227709..227957 | TCONS_00058077-exon-scaffold_305-1510915933:227709..227957 | Clytia hemisphaerica | exon |
| TCONS_00058077-exon-scaffold_305-1575043694:227709..227957 | TCONS_00058077-exon-scaffold_305-1575043694:227709..227957 | Clytia hemisphaerica | exon |
| TCONS_00058077-exon-scaffold_305-1491911889:228010..229042 | TCONS_00058077-exon-scaffold_305-1491911889:228010..229042 | Clytia hemisphaerica | exon |
| TCONS_00058077-exon-scaffold_305-1510915933:228010..229042 | TCONS_00058077-exon-scaffold_305-1510915933:228010..229042 | Clytia hemisphaerica | exon |
| TCONS_00058077-exon-scaffold_305-1575043694:228010..229042 | TCONS_00058077-exon-scaffold_305-1575043694:228010..229042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_305 | supercontig | scaffold_305:227709..229042 + |
Blast
The following BLAST results are available for this feature:
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