TCONS_00058088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058088
Unique NameTCONS_00058088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058088 ID=TCONS_00058088|Name=TCONS_00058088|organism=Clytia hemisphaerica|type=transcript|length=2263bp
TATATCTTCATCATAGTGGAATTAATAGTATGTCCCACTTCCAAAATTCA
CTAATATTaaatatttgtttcttttagtaaaaaagaaaaacaaacaaaaa
acacaataTCAAGATGACAGAATGCTTGGACGAGTTTGATGCCCCATCGC
CTATGCCAACAAAATTCTGTTCAAGAATCAGTCTTGCTGAATACGAAGAA
AATGCCAGTCGAAACACAGAAACTGGCTTAAAAGACCTGTTAGAATATTT
GCAATATAATCCAACCGTGTATTATGAGATCATGGCCAAACGCAAACGAG
AAGAACTGGACAACGCTGGGTTTTTATCGTATTTGAGATCCAGGCTAACT
GAATGGTACACAGGCTCGTCAACCGAAACGGTTGATCCGGAGCAAGCTAA
GAAACAACTAAATGATTTGAAAGATAGTATCGTGAAATCCTTCAATTATT
GTCAAGaaGCGAAAGGTTCAACTCGTCGTTTTTCTGCACGAATCGCCGAA
AAAAGGTGGCGAAAAGTCAACCACGGCAAGAAAGANCTAAGAAACAACTA
AATGATTTGAAAGATAGTATCGTGAAATCCTTCAATTATTGTCAAGaaGC
GAAAGGTTCAACTCGTCGTTTTTCTGCACGAATCGCCGAAAAAAGGTGGC
GAAAAGTCAACCACGGcaagaaagaaacaaaacatatcTCTCCAATCAAT
AGTAAACTTGACTTTGAAAGTGTCGCGAGTGACAATTCGAATACATATTC
TTCGATGGTTAAGAAAAGCAAAGAACAACCCAATGTCGACAACTGTGTCA
CTTCAAGATTTCCACTACCTCATACTCACACCAACGGAGATGCTCAAACA
AAAGGTCCTATTCCATCTTCTCAGCAAAGTATTTTAACTGTACCGAGGGG
CGTTCCACCACCtcctccaccaccaccaccgccTCAGGCTCACTCATTAC
CATCAGCAAAGATTTCGAAAACATTGTCAAAACCAACAGACAAAGGGGTT
GAACAATTATTAAACCATTCAGCGCCGGCGGATCATAGAGAATCGACGCT
CTCAGATAGTAAGATTCTTTCACAAAAGCGTAAACTAAAGAGTGTTTCGC
GGACTACCAACCACCAAACATCTGCGTCAACGAGCAACGGTAATGGAGAA
GGAGGCTACACCAGAATCATGGATGCTATCAAAAATCCTGACAGTCGTGC
TGCACTCAAGCAAATCTCTGGGAACAAGCCTGGTAGCTGGGTCACACCTC
CAAGAAAGAAGCATACTTCAGATAGCAGTAATATGTTCAACTTAGAACTA
ttgaggaaatttcaaaatgcaaaATCACCGGTCGGTACTGACTCTCCTGG
TTTCGATGTCACCTTTACACNTTATATGGCCAAGGGACCAAGAAACTCAA
ACACATGATACGACCAACACGGCTACAAGAAGACTGGAATGTTgtcatga
agaagaaaaaacaaaccagAAGAACTCGAGAAGACTTTTATTCACacttg
accttgctagctaaaCGGTTTTTCACGAGCTCTACTAGGATATCTTTTCT
CGGAGTGTGACTTTCAAAAGAGAGAAGAGAGAAGTGAAATCATCCAGAAT
TGGCCCTATCCTTGAATAGATACCTACCCTAGGATAGGGAAATTACCAGG
CTTACCAGACACTGCTAACCCTGCACTCGCGACACGACAGAGTTATTGGT
GTATAGACGATGgtactcgaactacacgggaggcAGTTTTGNTCCATGAT
GATGTTGTTCAACGTTTAAAGTGGAATGGTCGCCTTTTTCAGAAGGAGGG
TTGATAGTTCGAGTATGAGGTGTATTGTGTAATTATACACTCACTCCAAA
TGGTATCCTTCTTTTTGTATCAAATATTGTTTGTATACTGGAAAAGCCCA
CTTAAAGATCAGTAATAAAGTCTGCTGGCATCCAAAAAAATATAGACCCT
ATAACAGTTAGGATGACGTTGCATTGGGAATGAGGACGAAGGATTCCAAA
CTTGGAAATTTAAACGAGGGAACAAATTCTAGATTCCAAGACTCCTTGCT
CTTAGGAGAGACTATCGAGTGCTATACCCTTCCAACGCATACGATGATCT
ATCATTTTAAATTATGAtatgaattattatttttcgtttccctattttat
caactttttattttaaccttTTACTCCCTTTTATTAAATGATTGTACAGa
atgaattttatatttttattgatATGGAGAAAAATTAGAATCTAAGAAAA
TATCTGATGAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_305:69576..73173-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058088 ID=TCONS_00058088|Name=TCONS_00058088|organism=Clytia hemisphaerica|type=transcript|length=3598bp|location=Sequence derived from alignment at scaffold_305:69576..73173- (Clytia hemisphaerica)
TATATCTTCATCATAGTGGAATTAATAGTATGTCCCACTTCCAAAATTCA
CTAATATTAAATATTTGTTTCTTTTAGTAAAAAAGAAAAACAAACAAAAA
ACACAATATCAAGATGACAGAATGCTTGGACGAGTTTGATGCCCCATCGC
CTATGCCAACAAAATTCTGTTCAAGAATCAGTCTTGCTGAATACGAAGAA
AATGCCAGTCGAAACACAGAAACTGGCTTAAAAGACCTGTTAGAATATTT
GCAATATAATCCAACCGTGTATTATGAGATCATGGCCAAACGCAAACGAG
AAGAACTGGACAACGCTGGGTTTTTATCGTATTTGAGATCCAGGCTAACT
GAATGGTACACAGGCTCGTCAACCGAAACGGTTGATCCGGAGCAAGCTAA
GAAACAACTAAATGATTTGAAAGATAGTATCGTGAAATCCTTCAATTATT
GTCAAGGTAACCATCTCAAATCTTATTTCCTGGCAGATTTCCGAAGTTCT
TCCGACTAAGCGAAGTTTAAAAAGAGGTTTTTCATCTACTGCTACTATAA
TGTATTATTAATCGTCTATCCTTAATTTGCTCTTTGGTTTGGTCCAAATT
TCAGCCACTTGTTTTTATAAAAGGGGAAAGGAGACTGAATACTCAGTCTC
AGTTGATTATTGAGATATTCTCTTTTTTGTTTGTTTAGAAGCGAAAGGTT
CAACTCGTCGTTTTTCTGCACGAATCGCCGAAAAAAGGTGGCGAAAAGTC
AACCACGGCAAGAAAGANCTAAGAAACAACTAAATGATTTGAAAGATAGT
ATCGTGAAATCCTTCAATTATTGTCAAGGTAACCATCTCAAATCTTATTT
CCTGGCAGATTTCCGAAGTTCTTCCGACTAAGCGAAGTTTAAAAAGAGGT
TTTTCATCTAAAAATAAAATCAAAATAACCTACTGCTACTATAATGTATT
ATTAATCGTCTATCCTTAATTTGCTCTTTGGTTTGGTCCAAATTTCAGCC
ACTTGTTTTTATAGAAGGGGAGAGGAGACTGAATACTCAGTCTCAGTTGA
TTATTGAGCCATTCTCTTTTTTGTTTGTTTAGAAGCGAAAGGTTCAACTC
GTCGTTTTTCTGCACGAATCGCCGAAAAAAGGTGGCGAAAAGTCAACCAC
GGCAAGAAAGAAACAAAACATATCTCTCCAATCAATAGTAAACTTGACTT
TGAAAGTGTCGCGAGTGACAATTCGAATACATATTCTTCGATGGTTAAGA
AAAGCAAAGAACAACCCAATGTCGACAACTGTGTCACTTCAAGATTTCCA
CTACCTCATACTCACACCAACGGAGATGCTCAAACAAAAGGTCCTATTCC
ATCTTCTCAGCAAAGTATTTTAACTGTACCGAGGGGCGTTCCACCACCTC
CTCCACCACCACCACCGCCTCAGGCTCACTCATTACCATCAGCAAAGATT
TCGAAAACATTGTCAAAACCAACAGACAAAGGGGTTGAACAATTATTAAA
CCATTCAGCGCCGGCGGATCATAGAGAATCGACGCTCTCAGATAGTAAGG
TATGTTAATAGCGATTTTTATGAAATCTGGATTTCTTACTATTTATACTA
TTTATACTTGAATTTAAACACGGAAAAATTGGATTCAAATTCGAATCAAA
GTGCGTTAGGGCGTATTTGACCTCATAGCAATGTATTGAAAGGATCTACT
TAATCCTTCAGAATCTCAATGTCCTATTCGGGGAACACAAATTTGTTCGA
GTTAAGAAATTTCGAGATGTGGGGTAAAGTTGATATGGGGCATTATAAAA
TGAAGGGACGAGAAAACTTGTTCGATTTAAGGAGACATTTGAGTTTTAGA
GGTTCAAGTTAAAGAGACTTCACTGTATACCCTTTCTCTCTCAGATTCTT
TCACAAAAGCGTAAACTAAAGAGTGTTTCGCGGACTACCAACCACCAAAC
ATCTGCGTCAACGAGCAACGGTAATGGAGAAGGAGGCTACACCAGAATCA
TGGATGCTATCAAAAATCCTGACAGTCGTGCTGCACTCAAGCAAATCTCT
GGGAACAAGTAAGCGAAGCTATTTCAATAGACCTTTCCATAAATTACTTC
ACAAACATCATTTGCCTCGTTTTGAAATTATTGCCATGGTGATTAACTCC
CAGCGGATTTTATTGCAACTACTTTCTATTCATTAACAAATCATTTAATG
TCTCAAGGGATATGATCACCATGGAAATTGATTGAATATGAGGCAAGTGA
TGTTCGTGGACGTAATTTATGAAAAGGTCTATTCATTATAAAAATGGTTT
AAGGTTGGAAAGTTTACACGGAGACGATTTTCATCAAATTTCATTGGAAT
AAGTAAAATAAAACCTTTAGATTTCTTGAAGTCTTCAGAGTATCTTTTTT
GAGATTTTTGAAACTTTTTTCATTTCTAAATTACAGTTTTTCTCTAACCC
TGAAATCTCATAATATTNTTTGAAACTTTTTGAGGCAAATATTTTCATTT
CTAAATTTCAGTTTTTTTCTAACCCTGAAGTCTCATAATATTTTGCTTTA
TTGTACCCATAGGCCTGGTAGCTGGGTCACACCTCCAAGAAAGAAGCATA
CTTCAGATAGCAGTAATATGTTCAACTTAGAACTATTGAGGAAATTTCAA
AATGCAAAATCACCGGTCGGTACTGACTCTCCTGGTTTCGATGTCACCTT
TACACNTTATATGGCCAAGGGACCAAGAAACTCAAACACATGATACGACC
AACACGGCTACAAGAAGACTGGAATGTTGTCATGAAGAAGAAAAAACAAA
CCAGAAGAACTCGAGAAGACTTTTATTCACACTTGACCTTGCTAGCTAAA
CGGTTTTTCACGAGCTCTACTAGGATATCTTTTCTCGGAGTGTGACTTTC
AAAAGAGAGAAGAGAGAAGTGAAATCATCCAGAATTGGCCCTATCCTTGA
ATAGATACCTACCCTAGGATAGGGAAATTACCAGGCTTACCAGACACTGC
TAACCCTGCACTCGCGACACGACAGAGTTATTGGTGTATAGACGATGGTA
CTCGAACTACACGGGAGGCAGTTTTGNTCCATGATGATGTTGTTCAACGT
TTAAAGTGGAATGGTCGCCTTTTTCAGAAGGAGGGTTGATAGTTCGAGTA
TGAGGTGTATTGTGTAATTATACACTCACTCCAAATGGTATCCTTCTTTT
TGTATCAAATATTGTTTGTATACTGGAAAAGCCCACTTAAAGATCAGTAA
TAAAGTCTGCTGGCATCCAAAAAAATATAGACCCTATAACAGTTAGGATG
ACGTTGCATTGGGAATGAGGACGAAGGATTCCAAACTTGGAAATTTAAAC
GAGGGAACAAATTCTAGATTCCAAGACTCCTTGCTCTTAGGAGAGACTAT
CGAGTGCTATACCCTTCCAACGCATACGATGATCTATCATTTTAAATTAT
GATATGAATTATTATTTTTCGTTTCCCTATTTTATCAACTTTTTATTTTA
ACCTTTTACTCCCTTTTATTAAATGATTGTACAGAATGAATTTTATATTT
TTATTGATATGGAGAAAAATTAGAATCTAAGAAAATATCTGATGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036603XLOC_036603Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058088-exon-scaffold_305-1575043694:72718..73173TCONS_00058088-exon-scaffold_305-1575043694:72718..73173Clytia hemisphaericaexon
TCONS_00058088-exon-scaffold_305-1575043694:72346..72485TCONS_00058088-exon-scaffold_305-1575043694:72346..72485Clytia hemisphaericaexon
TCONS_00058088-exon-scaffold_305-1575043694:71625..72091TCONS_00058088-exon-scaffold_305-1575043694:71625..72091Clytia hemisphaericaexon
TCONS_00058088-exon-scaffold_305-1575043694:71116..71279TCONS_00058088-exon-scaffold_305-1575043694:71116..71279Clytia hemisphaericaexon
TCONS_00058088-exon-scaffold_305-1575043694:69576..70611TCONS_00058088-exon-scaffold_305-1575043694:69576..70611Clytia hemisphaericaexon
TCONS_00058088-exon-scaffold_305-1510915933:72718..73173TCONS_00058088-exon-scaffold_305-1510915933:72718..73173Clytia hemisphaericaexon
TCONS_00058088-exon-scaffold_305-1510915933:72346..72485TCONS_00058088-exon-scaffold_305-1510915933:72346..72485Clytia hemisphaericaexon
TCONS_00058088-exon-scaffold_305-1510915933:71625..72091TCONS_00058088-exon-scaffold_305-1510915933:71625..72091Clytia hemisphaericaexon
TCONS_00058088-exon-scaffold_305-1510915933:71116..71279TCONS_00058088-exon-scaffold_305-1510915933:71116..71279Clytia hemisphaericaexon
TCONS_00058088-exon-scaffold_305-1510915933:69576..70611TCONS_00058088-exon-scaffold_305-1510915933:69576..70611Clytia hemisphaericaexon
TCONS_00058088-exon-scaffold_305-1491911889:72718..73173TCONS_00058088-exon-scaffold_305-1491911889:72718..73173Clytia hemisphaericaexon
TCONS_00058088-exon-scaffold_305-1491911889:72346..72485TCONS_00058088-exon-scaffold_305-1491911889:72346..72485Clytia hemisphaericaexon
TCONS_00058088-exon-scaffold_305-1491911889:71625..72091TCONS_00058088-exon-scaffold_305-1491911889:71625..72091Clytia hemisphaericaexon
TCONS_00058088-exon-scaffold_305-1491911889:71116..71279TCONS_00058088-exon-scaffold_305-1491911889:71116..71279Clytia hemisphaericaexon
TCONS_00058088-exon-scaffold_305-1491911889:69576..70611TCONS_00058088-exon-scaffold_305-1491911889:69576..70611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_305supercontigscaffold_305:69576..73173 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.14231	0	0	0.10774	0	0	0.11633	0	0	0	0	0	0	0	0	0	0	0	0	0	9.46044e-10	2.34805e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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