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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058100 ID=TCONS_00058100|Name=TCONS_00058100|organism=Clytia hemisphaerica|type=transcript|length=3202bp
TCTGGCATGACACACTTGACGTCAATCAACAGCCCGAGGAGAAAGTAATC
AAGACTTTAATCTATGGCGTCAAGTCTAGTGGAAATCAATCAGAGAGAGG
TATCCGTCAGACATCAGCACTTTCCAAGAAAGAATTTCCACGTGTCGATG
AAATCGTGAATGATGACTTGTATGTTGATGATTGCATCTCTGGAGGAGAG
GACTTAACATCTGCAATGACTACCGCAGACGAAATGGAGATTTCTTTGGG
CAGAGGTGGTTTTGGTCTTAAAGGATTTACCTTCAGTGGATCGGATCCTC
CAGAATCATTGACCAAGGATGGAACATCAATTGGTGTTGGAGGACTTATC
TGGTATCCAAAGTCAGATGAAATCTCTATCGACGTGTCCGAGCTGAACTT
TGCGAAAAAAATAACGAGGCAAAAAACCAACCGTTCAAGTTGGTGTCGTA
CCTGAGAGGCTAACAAGACGTCACTGTGTTTCAAAGGTCAGCGAGTTATT
CGACATCACAGGCAAAGTCACACCAGTAACCGCATCATTCAAGTTGGATC
TTCACAATCTCATTGAGCGTGGTTTGGGCTGGGACGATGTTATACCTGAC
AACTTACGTGTAATCTGGGAAGATAATTTCCAGATGATGCAGGAGATCAA
AAATATCAAGTACTCAAGGACTATTGTTCCACCAGATGCAGCCAATCTAA
ACATCAACACAGTCGATTTTGGAGATGCAAGCAAACAAATGGCAGCCATC
ACCAGATATACAAGAATCCAACGCACCAATGGAACGTATTCATCTCAACT
AATTTTCTCAAGATCAAAAGTCATATCACCAACAACTCAACCTCGTGCCG
AACTTGCTGCAGCTGTTCTAAATGCCCACACTGGTACTGTTGTCAAACGT
GCACTCAAGTCAAAACATGAAAGCTCCGTCAAACTCACTGACAGCACCat
TGTCCTACATTGGATAAGCAACGATGAACTGATACTCAAGCCATTCGTTC
GAAATCGAATCTCAGAAATCAAACGTTTCACCTCACCTGAAGAATGGCGC
TACATAAATACCAAATGCATGCTGGCTGATGTCGCAACAAGGAAAGGTGC
ACAACTTGAAGACATCGACAGTGGTTCTGAATGGATCAACGGTCAAGAGT
GGATGTCATTAAACACTGATGAATTCCCAACAAAAACCGTTAGTCAAATC
ATCCTCGACTCAGTTGATTTAAACCACATGAAGAAGGAGACAACCTATGA
ATCAAATCATCAAGAAGTCTACCTCTCATATCAAAATCGATCTTTACCTA
TTGAAGTTAAAGAGAGATACAAATTCTCAACCTACTTACTGGATCCCAAC
AAGTTCCGCTTTCGCAGCGTCGTGAGAATCTTTGCTTATGTGATCAAATA
TGTGAAGAGCCTTAAACATTCAGTGctcaaaaggaaagaaaaagaaggaa
gTAAAAGTAAAACAACACCACGTGACCCTGAAGATACTCGTCTCACAGAA
GAAGAGCTTCAACAGGCTGAATCTTATTACTGGCGAAAAGCAACAAATGA
AGTCAAAAAATTCGTCAATCCACAGAAGTACAAGCATTTATCCACAGAAC
AAGATGGAATACTGAAATACACAGGAAGAATCCTACCGGATGATGAAATC
AATATCACAACCCCTATGACTCGTGTGATGAAGGATTTACAAACAACAAG
TTTCTGTGTACCAATCGTGGACAAAAATTCCCCACTGGCCTATGCGATCT
TACATGAAATCCATTGGCATGACAAGACAGCAAGACATTCTGGCATTGAA
TGCAATCTTCGTTATGCTTCCAAAGTTGCCCATATTCTGGAAGGTCGTGA
CGTTGCCAAAAGGATCAAAGCCTCATGCAAATTATGTCGTTATCTGGAAA
AGCAACGTGTCAAGGTTGCCATGGGAAAGACACCAAACTGCTGCTTGACT
ATCGCTCCAGCTTTCTACAATACACAATGCGACTTAGCTGGTCCGTTTCT
GGCATTCGATACCCACAACAAACGTAAATCGATCAAGATCTGGCTAACCA
TCTTCTGCTGTTCAACAACATCTACAATTTCCATCAAAATCATGGATGAT
TACAGTACGCCAGCCTTTCTCATGTCATTTACACGTTTTTCGTGTGATAA
TGGTTATCCAAAGAATATGTACGTGGATCAAGGTAGCCAAATAATCAAAG
GATGTGCTGACACCAAGATCAATTTCAGGGATCTCCAGTCACGTCTACTC
ATCGATGTCAATGTAAATTTTGAAGTCTGCCCTGTAGGTGGACACAACTT
CAATGGAAAGGTGGAGAGAAAAATCCGTGAAGTGAAAGCATCAATCAATA
AATCCCTATCAAACCAGAAATTATCAGTTATTCAATGGGAAACAATATCG
TCCGAGATTGCCAATTCAGTCAATGACCTACCACTAGCACTTCATGGAGT
AGTTGCAGACTTTGAAACAATGGACTTAATAACACCCAATCGCTTAAAAC
TTGGCAGAAATAACGACTGCAGTCCCGCTGGTCCCTTCACGATAGAAAAA
CGCTTCTCAAAGATTATGGAAACCAATCAACAAATCTATGATGCTTGGTT
TGACCAATGGTTAATCAATCACGTCCCCAAAATCGTTCATCAGCCAAAGT
GGTTCGTTCAAGACAGAGATATGATGGTTGGTGACATTGTATTGTTTCTA
CAAAAAGAATCGGTTTTATCATCCACATACCACTACGGAATGGTCAAAGA
ATTGTTCCCTGGTCGTGACTTAAAGATTCGAAAGGTGAAGGTAGTCTACA
AAAATCAATACGAGAAAACCTTTCGAGAAACCATGCGTGCAGTTCGTGAG
TTGATTGTCATACACCAAGTGGATGAAATTGATTTAATGGATGAATTGAA
CGATATGTACAAAAATTCCAAGTAATTCACCTGACTTTTGAATCTGCCTG
GGGGCAGTGTAAAGTGAACATTAATGACTTCAAAAGTCATTGAAATTAGT
CATTAAAGACGTCATAATGAGCCGTCACTTGACTCATCTTTTTagattaa
ttatttttcattattcatttttACGATCCATAGGGAATTCTCCTAGCTCA
TTTCCACTCGCGTTTCAACTTTGTTTTCATGATTCAATGACAAACCTTCT
ATGAGAAGGGTGAGTGAAATTTTGCAAGAGTCAATTTTTGACACGATTTT
TT Run BLAST on NCBI protein sequence of TCONS_00058100-protein >TCONS_00058100-protein ID=TCONS_00058100-protein|Name=TCONS_00058100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=763bp
MMQEIKNIKYSRTIVPPDAANLNINTVDFGDASKQMAAITRYTRIQRTNG
TYSSQLIFSRSKVISPTTQPRAELAAAVLNAHTGTVVKRALKSKHESSVK
LTDSTIVLHWISNDELILKPFVRNRISEIKRFTSPEEWRYINTKCMLADV
ATRKGAQLEDIDSGSEWINGQEWMSLNTDEFPTKTVSQIILDSVDLNHMK
KETTYESNHQEVYLSYQNRSLPIEVKERYKFSTYLLDPNKFRFRSVVRIF
AYVIKYVKSLKHSVLKRKEKEGSKSKTTPRDPEDTRLTEEELQQAESYYW
RKATNEVKKFVNPQKYKHLSTEQDGILKYTGRILPDDEINITTPMTRVMK
DLQTTSFCVPIVDKNSPLAYAILHEIHWHDKTARHSGIECNLRYASKVAH
ILEGRDVAKRIKASCKLCRYLEKQRVKVAMGKTPNCCLTIAPAFYNTQCD
LAGPFLAFDTHNKRKSIKIWLTIFCCSTTSTISIKIMDDYSTPAFLMSFT
RFSCDNGYPKNMYVDQGSQIIKGCADTKINFRDLQSRLLIDVNVNFEVCP
VGGHNFNGKVERKIREVKASINKSLSNQKLSVIQWETISSEIANSVNDLP
LALHGVVADFETMDLITPNRLKLGRNNDCSPAGPFTIEKRFSKIMETNQQ
IYDAWFDQWLINHVPKIVHQPKWFVQDRDMMVGDIVLFLQKESVLSSTYH
YGMVKELFPGRDLKIRKVKVVYKNQYEKTFRETMRAVRELIVIHQVDEID
LMDELNDMYKNSK Run BLAST on NCBI transcript from alignment at scaffold_305:115376..118577 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058100 ID=TCONS_00058100|Name=TCONS_00058100|organism=Clytia hemisphaerica|type=transcript|length=3202bp|location=Sequence derived from alignment at scaffold_305:115376..118577 (Clytia hemisphaerica)
AAAAAATCGTGTCAAAAATTGACTCTTGCAAAATTTCACTCACCCTTCTC
ATAGAAGGTTTGTCATTGAATCATGAAAACAAAGTTGAAACGCGAGTGGA
AATGAGCTAGGAGAATTCCCTATGGATCGTaaaaatgaataatgaaaaat
aattaatctAAAAAGATGAGTCAAGTGACGGCTCATTATGACGTCTTTAA
TGACTAATTTCAATGACTTTTGAAGTCATTAATGTTCACTTTACACTGCC
CCCAGGCAGATTCAAAAGTCAGGTGAATTACTTGGAATTTTTGTACATAT
CGTTCAATTCATCCATTAAATCAATTTCATCCACTTGGTGTATGACAATC
AACTCACGAACTGCACGCATGGTTTCTCGAAAGGTTTTCTCGTATTGATT
TTTGTAGACTACCTTCACCTTTCGAATCTTTAAGTCACGACCAGGGAACA
ATTCTTTGACCATTCCGTAGTGGTATGTGGATGATAAAACCGATTCTTTT
TGTAGAAACAATACAATGTCACCAACCATCATATCTCTGTCTTGAACGAA
CCACTTTGGCTGATGAACGATTTTGGGGACGTGATTGATTAACCATTGGT
CAAACCAAGCATCATAGATTTGTTGATTGGTTTCCATAATCTTTGAGAAG
CGTTTTTCTATCGTGAAGGGACCAGCGGGACTGCAGTCGTTATTTCTGCC
AAGTTTTAAGCGATTGGGTGTTATTAAGTCCATTGTTTCAAAGTCTGCAA
CTACTCCATGAAGTGCTAGTGGTAGGTCATTGACTGAATTGGCAATCTCG
GACGATATTGTTTCCCATTGAATAACTGATAATTTCTGGTTTGATAGGGA
TTTATTGATTGATGCTTTCACTTCACGGATTTTTCTCTCCACCTTTCCAT
TGAAGTTGTGTCCACCTACAGGGCAGACTTCAAAATTTACATTGACATCG
ATGAGTAGACGTGACTGGAGATCCCTGAAATTGATCTTGGTGTCAGCACA
TCCTTTGATTATTTGGCTACCTTGATCCACGTACATATTCTTTGGATAAC
CATTATCACACGAAAAACGTGTAAATGACATGAGAAAGGCTGGCGTACTG
TAATCATCCATGATTTTGATGGAAATTGTAGATGTTGTTGAACAGCAGAA
GATGGTTAGCCAGATCTTGATCGATTTACGTTTGTTGTGGGTATCGAATG
CCAGAAACGGACCAGCTAAGTCGCATTGTGTATTGTAGAAAGCTGGAGCG
ATAGTCAAGCAGCAGTTTGGTGTCTTTCCCATGGCAACCTTGACACGTTG
CTTTTCCAGATAACGACATAATTTGCATGAGGCTTTGATCCTTTTGGCAA
CGTCACGACCTTCCAGAATATGGGCAACTTTGGAAGCATAACGAAGATTG
CATTCAATGCCAGAATGTCTTGCTGTCTTGTCATGCCAATGGATTTCATG
TAAGATCGCATAGGCCAGTGGGGAATTTTTGTCCACGATTGGTACACAGA
AACTTGTTGTTTGTAAATCCTTCATCACACGAGTCATAGGGGTTGTGATA
TTGATTTCATCATCCGGTAGGATTCTTCCTGTGTATTTCAGTATTCCATC
TTGTTCTGTGGATAAATGCTTGTACTTCTGTGGATTGACGAATTTTTTGA
CTTCATTTGTTGCTTTTCGCCAGTAATAAGATTCAGCCTGTTGAAGCTCT
TCTTCTGTGAGACGAGTATCTTCAGGGTCACGTGGTGTTGTTTTACTTTT
ActtccttctttttctttccttttgagCACTGAATGTTTAAGGCTCTTCA
CATATTTGATCACATAAGCAAAGATTCTCACGACGCTGCGAAAGCGGAAC
TTGTTGGGATCCAGTAAGTAGGTTGAGAATTTGTATCTCTCTTTAACTTC
AATAGGTAAAGATCGATTTTGATATGAGAGGTAGACTTCTTGATGATTTG
ATTCATAGGTTGTCTCCTTCTTCATGTGGTTTAAATCAACTGAGTCGAGG
ATGATTTGACTAACGGTTTTTGTTGGGAATTCATCAGTGTTTAATGACAT
CCACTCTTGACCGTTGATCCATTCAGAACCACTGTCGATGTCTTCAAGTT
GTGCACCTTTCCTTGTTGCGACATCAGCCAGCATGCATTTGGTATTTATG
TAGCGCCATTCTTCAGGTGAGGTGAAACGTTTGATTTCTGAGATTCGATT
TCGAACGAATGGCTTGAGTATCAGTTCATCGTTGCTTATCCAATGTAGGA
CAatGGTGCTGTCAGTGAGTTTGACGGAGCTTTCATGTTTTGACTTGAGT
GCACGTTTGACAACAGTACCAGTGTGGGCATTTAGAACAGCTGCAGCAAG
TTCGGCACGAGGTTGAGTTGTTGGTGATATGACTTTTGATCTTGAGAAAA
TTAGTTGAGATGAATACGTTCCATTGGTGCGTTGGATTCTTGTATATCTG
GTGATGGCTGCCATTTGTTTGCTTGCATCTCCAAAATCGACTGTGTTGAT
GTTTAGATTGGCTGCATCTGGTGGAACAATAGTCCTTGAGTACTTGATAT
TTTTGATCTCCTGCATCATCTGGAAATTATCTTCCCAGATTACACGTAAG
TTGTCAGGTATAACATCGTCCCAGCCCAAACCACGCTCAATGAGATTGTG
AAGATCCAACTTGAATGATGCGGTTACTGGTGTGACTTTGCCTGTGATGT
CGAATAACTCGCTGACCTTTGAAACACAGTGACGTCTTGTTAGCCTCTCA
GGTACGACACCAACTTGAACGGTTGGTTTTTTGCCTCGTTATTTTTTTCG
CAAAGTTCAGCTCGGACACGTCGATAGAGATTTCATCTGACTTTGGATAC
CAGATAAGTCCTCCAACACCAATTGATGTTCCATCCTTGGTCAATGATTC
TGGAGGATCCGATCCACTGAAGGTAAATCCTTTAAGACCAAAACCACCTC
TGCCCAAAGAAATCTCCATTTCGTCTGCGGTAGTCATTGCAGATGTTAAG
TCCTCTCCTCCAGAGATGCAATCATCAACATACAAGTCATCATTCACGAT
TTCATCGACACGTGGAAATTCTTTCTTGGAAAGTGCTGATGTCTGACGGA
TACCTCTCTCTGATTGATTTCCACTAGACTTGACGCCATAGATTAAAGTC
TTGATTACTTTCTCCTCGGGCTGTTGATTGACGTCAAGTGTGTCATGCCA
GA Coding sequence (CDS) from alignment at scaffold_305:115376..118577 >TCONS_00058100 ID=TCONS_00058100|Name=TCONS_00058100|organism=Clytia hemisphaerica|type=CDS|length=2292bp|location=Sequence derived from alignment at scaffold_305:115376..118577 (Clytia hemisphaerica)
TTACTTGGAATTTTTGTACATATCGTTCAATTCATCCATTAAATCAATTT
CATCCACTTGGTGTATGACAATCAACTCACGAACTGCACGCATGGTTTCT
CGAAAGGTTTTCTCGTATTGATTTTTGTAGACTACCTTCACCTTTCGAAT
CTTTAAGTCACGACCAGGGAACAATTCTTTGACCATTCCGTAGTGGTATG
TGGATGATAAAACCGATTCTTTTTGTAGAAACAATACAATGTCACCAACC
ATCATATCTCTGTCTTGAACGAACCACTTTGGCTGATGAACGATTTTGGG
GACGTGATTGATTAACCATTGGTCAAACCAAGCATCATAGATTTGTTGAT
TGGTTTCCATAATCTTTGAGAAGCGTTTTTCTATCGTGAAGGGACCAGCG
GGACTGCAGTCGTTATTTCTGCCAAGTTTTAAGCGATTGGGTGTTATTAA
GTCCATTGTTTCAAAGTCTGCAACTACTCCATGAAGTGCTAGTGGTAGGT
CATTGACTGAATTGGCAATCTCGGACGATATTGTTTCCCATTGAATAACT
GATAATTTCTGGTTTGATAGGGATTTATTGATTGATGCTTTCACTTCACG
GATTTTTCTCTCCACCTTTCCATTGAAGTTGTGTCCACCTACAGGGCAGA
CTTCAAAATTTACATTGACATCGATGAGTAGACGTGACTGGAGATCCCTG
AAATTGATCTTGGTGTCAGCACATCCTTTGATTATTTGGCTACCTTGATC
CACGTACATATTCTTTGGATAACCATTATCACACGAAAAACGTGTAAATG
ACATGAGAAAGGCTGGCGTACTGTAATCATCCATGATTTTGATGGAAATT
GTAGATGTTGTTGAACAGCAGAAGATGGTTAGCCAGATCTTGATCGATTT
ACGTTTGTTGTGGGTATCGAATGCCAGAAACGGACCAGCTAAGTCGCATT
GTGTATTGTAGAAAGCTGGAGCGATAGTCAAGCAGCAGTTTGGTGTCTTT
CCCATGGCAACCTTGACACGTTGCTTTTCCAGATAACGACATAATTTGCA
TGAGGCTTTGATCCTTTTGGCAACGTCACGACCTTCCAGAATATGGGCAA
CTTTGGAAGCATAACGAAGATTGCATTCAATGCCAGAATGTCTTGCTGTC
TTGTCATGCCAATGGATTTCATGTAAGATCGCATAGGCCAGTGGGGAATT
TTTGTCCACGATTGGTACACAGAAACTTGTTGTTTGTAAATCCTTCATCA
CACGAGTCATAGGGGTTGTGATATTGATTTCATCATCCGGTAGGATTCTT
CCTGTGTATTTCAGTATTCCATCTTGTTCTGTGGATAAATGCTTGTACTT
CTGTGGATTGACGAATTTTTTGACTTCATTTGTTGCTTTTCGCCAGTAAT
AAGATTCAGCCTGTTGAAGCTCTTCTTCTGTGAGACGAGTATCTTCAGGG
TCACGTGGTGTTGTTTTACTTTTActtccttctttttctttccttttgag
CACTGAATGTTTAAGGCTCTTCACATATTTGATCACATAAGCAAAGATTC
TCACGACGCTGCGAAAGCGGAACTTGTTGGGATCCAGTAAGTAGGTTGAG
AATTTGTATCTCTCTTTAACTTCAATAGGTAAAGATCGATTTTGATATGA
GAGGTAGACTTCTTGATGATTTGATTCATAGGTTGTCTCCTTCTTCATGT
GGTTTAAATCAACTGAGTCGAGGATGATTTGACTAACGGTTTTTGTTGGG
AATTCATCAGTGTTTAATGACATCCACTCTTGACCGTTGATCCATTCAGA
ACCACTGTCGATGTCTTCAAGTTGTGCACCTTTCCTTGTTGCGACATCAG
CCAGCATGCATTTGGTATTTATGTAGCGCCATTCTTCAGGTGAGGTGAAA
CGTTTGATTTCTGAGATTCGATTTCGAACGAATGGCTTGAGTATCAGTTC
ATCGTTGCTTATCCAATGTAGGACAatGGTGCTGTCAGTGAGTTTGACGG
AGCTTTCATGTTTTGACTTGAGTGCACGTTTGACAACAGTACCAGTGTGG
GCATTTAGAACAGCTGCAGCAAGTTCGGCACGAGGTTGAGTTGTTGGTGA
TATGACTTTTGATCTTGAGAAAATTAGTTGAGATGAATACGTTCCATTGG
TGCGTTGGATTCTTGTATATCTGGTGATGGCTGCCATTTGTTTGCTTGCA
TCTCCAAAATCGACTGTGTTGATGTTTAGATTGGCTGCATCTGGTGGAAC
AATAGTCCTTGAGTACTTGATATTTTTGATCTCCTGCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058100-exon-scaffold_305-1491911889:115376..118577 | TCONS_00058100-exon-scaffold_305-1491911889:115376..118577 | Clytia hemisphaerica | exon |
| TCONS_00058100-exon-scaffold_305-1510915933:115376..118577 | TCONS_00058100-exon-scaffold_305-1510915933:115376..118577 | Clytia hemisphaerica | exon |
| TCONS_00058100-exon-scaffold_305-1575043694:115376..118577 | TCONS_00058100-exon-scaffold_305-1575043694:115376..118577 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_305 | supercontig | scaffold_305:115376..118577 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
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| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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