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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058112 ID=TCONS_00058112|Name=TCONS_00058112|organism=Clytia hemisphaerica|type=transcript|length=1026bp
ttaaaaattcCTAACACGAAATAACCCTAAGGGTTTACAAGGTCGGTTGG
AAGTAAAAACTATAATGATGTATATAATGTTAAAAATCTAAGAAATAAAA
ACTATAAGNAACTATAATGATGTATATAATGTTAAAAATCTAAGAAATAA
AAACTATAATAAGAGAAAAATAGAAATGAGCAGAAATGGAGGAGAGAATA
GATATATACATAATTATTTTATAAGTTGCTTTGGCAGCAGCAAGGaatat
atttttggatgatGGAAGTGGTGGAATTGCAGATTTAACTGATGAGTTTT
AATTTAAGTTTGGAAGAGAAAGTGGACTGGCTTGTCAAAGTGCTAAAGGG
TAAGCAGTTTTGGTTCCAGTATTGAGGACCGTAGAAACGAATAGGAGACT
TTGCTTGATCATAGTGTAAGGTGAACAATGCATTTTTTTGGATTCTAGTA
CCTGTTTGATGTTTAGGGTCAATGAAAAGGTCGTTTAAGATTTTAGGAGC
TGTTTTATGTTTTATCCTATGTATGAGCTTACAACATTCAAGTTTATAGA
TGGATTCTATATCTAAAGGATTAAAAGGGTTCTGTTTATTTTTTAGAAGt
atcttgtttattttgttaatatttttttgtcttattttatttaatttgct
CATGTTCTTAGTATCAGGGGATCCCCATGAGGTGATACAGTATTGGAGAT
GGGATTGACAAAAGGAATAATAAAGAGAGGGTAAGTTTTCTGGGGAAATA
ATGTGACTGAGTTTATGTATTATACCTGTGCCTTGTTTCATCTTTGTTAT
TATATATTCTAGGTGAGGTTGCCAGGATAATTTGTCATCTATAAGTATGC
CGAGATATTTTGCTTTACTTACCTTCTTTACCTCAGTACCAGCTATTTTT
ACAGTAaagttttcgattgttttctttCCTGAAAAAAGAATATAGCATGA
TTTTTTAACATTCAGTGAGAGTCGGTTACTTATCAACCAGTTATTGATGT
GTTCTAATTCCTTATTAACCTGTTCT Run BLAST on NCBI protein sequence of TCONS_00058112-protein >TCONS_00058112-protein ID=TCONS_00058112-protein|Name=TCONS_00058112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
EQVNKELEHINNWLISNRLSLNVKKSCYILFSGKKTIENFTVKIAGTEVK
KVSKAKYLGILIDDKLSWQPHLEYIITKMKQGTGIIHKLSHIISPENLPS
LYYSFCQSHLQYCITSWGSPDTKNMSKLNKIRQKNINKINKILLKNKQNP
FNPLDIESIYKLECCKLIHRIKHKTAPKILNDLFIDPKHQTGTRIQKNAL
FTLHYDQAKSPIRFYGPQYWNQNCLPFSTLTSQSTFSSKLKLKLIS Run BLAST on NCBI transcript from alignment at scaffold_305:245374..246399 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058112 ID=TCONS_00058112|Name=TCONS_00058112|organism=Clytia hemisphaerica|type=transcript|length=1026bp|location=Sequence derived from alignment at scaffold_305:245374..246399 (Clytia hemisphaerica)
AGAACAGGTTAATAAGGAATTAGAACACATCAATAACTGGTTGATAAGTA
ACCGACTCTCACTGAATGTTAAAAAATCATGCTATATTCTTTTTTCAGGa
aagaaaacaatcgaaaacttTACTGTAAAAATAGCTGGTACTGAGGTAAA
GAAGGTAAGTAAAGCAAAATATCTCGGCATACTTATAGATGACAAATTAT
CCTGGCAACCTCACCTAGAATATATAATAACAAAGATGAAACAAGGCACA
GGTATAATACATAAACTCAGTCACATTATTTCCCCAGAAAACTTACCCTC
TCTTTATTATTCCTTTTGTCAATCCCATCTCCAATACTGTATCACCTCAT
GGGGATCCCCTGATACTAAGAACATGagcaaattaaataaaataagacaa
aaaaatattaacaaaataaacaagataCTTCTAAAAAATAAACAGAACCC
TTTTAATCCTTTAGATATAGAATCCATCTATAAACTTGAATGTTGTAAGC
TCATACATAGGATAAAACATAAAACAGCTCCTAAAATCTTAAACGACCTT
TTCATTGACCCTAAACATCAAACAGGTACTAGAATCCAAAAAAATGCATT
GTTCACCTTACACTATGATCAAGCAAAGTCTCCTATTCGTTTCTACGGTC
CTCAATACTGGAACCAAAACTGCTTACCCTTTAGCACTTTGACAAGCCAG
TCCACTTTCTCTTCCAAACTTAAATTAAAACTCATCAGTTAAATCTGCAA
TTCCACCACTTCCatcatccaaaaatatattCCTTGCTGCTGCCAAAGCA
ACTTATAAAATAATTATGTATATATCTATTCTCTCCTCCATTTCTGCTCA
TTTCTATTTTTCTCTTATTATAGTTTTTATTTCTTAGATTTTTAACATTA
TATACATCATTATAGTTNCTTATAGTTTTTATTTCTTAGATTTTTAACAT
TATATACATCATTATAGTTTTTACTTCCAACCGACCTTGTAAACCCTTAG
GGTTATTTCGTGTTAGgaatttttaa Coding sequence (CDS) from alignment at scaffold_305:245374..246399 >TCONS_00058112 ID=TCONS_00058112|Name=TCONS_00058112|organism=Clytia hemisphaerica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_305:245374..246399 (Clytia hemisphaerica)
GAACAGGTTAATAAGGAATTAGAACACATCAATAACTGGTTGATAAGTAA
CCGACTCTCACTGAATGTTAAAAAATCATGCTATATTCTTTTTTCAGGaa
agaaaacaatcgaaaacttTACTGTAAAAATAGCTGGTACTGAGGTAAAG
AAGGTAAGTAAAGCAAAATATCTCGGCATACTTATAGATGACAAATTATC
CTGGCAACCTCACCTAGAATATATAATAACAAAGATGAAACAAGGCACAG
GTATAATACATAAACTCAGTCACATTATTTCCCCAGAAAACTTACCCTCT
CTTTATTATTCCTTTTGTCAATCCCATCTCCAATACTGTATCACCTCATG
GGGATCCCCTGATACTAAGAACATGagcaaattaaataaaataagacaaa
aaaatattaacaaaataaacaagataCTTCTAAAAAATAAACAGAACCCT
TTTAATCCTTTAGATATAGAATCCATCTATAAACTTGAATGTTGTAAGCT
CATACATAGGATAAAACATAAAACAGCTCCTAAAATCTTAAACGACCTTT
TCATTGACCCTAAACATCAAACAGGTACTAGAATCCAAAAAAATGCATTG
TTCACCTTACACTATGATCAAGCAAAGTCTCCTATTCGTTTCTACGGTCC
TCAATACTGGAACCAAAACTGCTTACCCTTTAGCACTTTGACAAGCCAGT
CCACTTTCTCTTCCAAACTTAAATTAAAACTCATCAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058112-exon-scaffold_305-1491911889:245374..246399 | TCONS_00058112-exon-scaffold_305-1491911889:245374..246399 | Clytia hemisphaerica | exon |
| TCONS_00058112-exon-scaffold_305-1510915933:245374..246399 | TCONS_00058112-exon-scaffold_305-1510915933:245374..246399 | Clytia hemisphaerica | exon |
| TCONS_00058112-exon-scaffold_305-1575043694:245374..246399 | TCONS_00058112-exon-scaffold_305-1575043694:245374..246399 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_305 | supercontig | scaffold_305:245374..246399 . |
Blast
The following BLAST results are available for this feature:
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