TCONS_00058113 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058113
Unique NameTCONS_00058113
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1970

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058113 ID=TCONS_00058113|Name=TCONS_00058113|organism=Clytia hemisphaerica|type=transcript|length=1970bp
tttttggacctaccgggaggtcctttaatttgaccgttgtccgttcgtct
gttacaagcttttctcgggattggctcattagtttttttttattttttgc
acaatgatacaaaatggcaatgcctgaaaagtgacggagcccgatttgtg
aaaaaaattcctggggggcaaatttggaaAAGAAGCTGTTAAAAGCCTCA
CTGACCACCCAAAACGCTATTTGGAAGGACATGAAAATTCGAAGAAACAT
CAAGATTCCGTCAAAGAATACGAAGGTGTGTACATCAAACATATATCAGG
ACTCTTCATAACTCGGATATTGACAGACATTTTCCAACTATATGACCTTT
ATCACCTAAATATCCACATGTTCTTCTTATTTTTGACGTTATATTACCAT
TCTCGACTCacttttattatcttttttatttttgctttcaTAGAGTACAT
GAACGTCTATAAAAACAGTAACGAAAGATCTTACATTACACCGGTTACAA
GTAACTTGACAATGACAATAACTATGACAATGACACATTTGCACCCTTAT
GCACTATAAAGCCTCGACAAAGTACTCTGAAACAATGCCAACAATTTACA
ACTTTTATTGCTCTAAGGTAGAATGCTGATGTCAATTGTCAGGCTTTCTA
ATATTTCATCATTCACAATTATTTTCTCGATTTATTGGCTCATAAACTTT
AGTTGGCGTATCTTTAGATACaccctttttataagaatatcgtaTTTTGG
TTGAGGTAAAAAATGTAGGCAATTTTCACTCTGATATTCTTAGATTTGAT
TCTTGTAGGAAAGGCGTgtaattttaaaatacATTTCGTTCAATCTATTT
TACAGAATTCAAGATGCAACACACTTTATCAAGTATTGAAGAGGAAAAAC
TACGGAGAGAGATTGGAGAATCCGAGATAACAGAAGAAGCTCTTCTCAAG
CTTCTGAAAATAACAGTGTTTATGATTAAAAAACACTGGGCCCATACATA
CAACTACAAGGACTTTGTTGAGTTTGTTAGTTTTGATCTAGGCGACGCTG
TCTTGAAGAAGTACATGGAACTTGCGGAGTCACATAAAAATGCAACTTAT
CTCTGGACTTCCACTGTCGTTCAACTTGTTAAAGTCATCAGTGAATGGat
gaaagaagagactctagaAGAATTAAGGAACTGCGAAGATTTCACACTTT
TACTTGACAAGTCAACTGATGATAGTAACAGATCTGAGCTTTGTCTTCAA
GTGAGAATTGTAAAAGGAGGAgaaattcaaaatcattttcttgaCCTACT
TCAACTTAAACGAGGAGACGCTCGCAGCATCTTTGATTCCATTGTTGAAT
ATTGTCAGAAAAATGAGATCAACTTAGATCACGCAAGATTTGGTGGAATG
GATGGTTGCACTGTCATGTCTGGTGAGCATAACGGACTCAAAGCTCTTCT
TGGGAACATTACTCCACACTTTATTTATATACATTGTCGTAACCACCGTC
TTGCATTGTGTTTTGCACATTTAATTCCAGAGTTCAAAGAGTTCGAAAAT
TTTGATGGGTTACTTTTGAATCTCTATCTATTACTTAAAAAAAGTACCGT
TAAACAGTCAATTTTCGACGAGGTTCAAAAGGCATACAACTTAACATCCC
TCAAATTGATCAAAGCAGCCGTAACTCGCTGGTTAAGTCATGGTCAAGCT
GGTCAAAGAGTATTAGACCTTTACGAGGCTTTGATTGCTGCACTTgatga
aatattcttacggaaACACGAACCAGCAGTGAGGGGTTTACGTGACGATC
TTATCAAGCCAACCACAATAGCTACTCTTTGCATTTTAACTGATGTAATT
ATGATGACAAACACAATGCAAAAATTTCTACAGTCTTCACGGCTCAATTT
CTTGGATATACccagagagaaagaaaaattaattgaaaagtTGAACGCTA
AATATAACAGCCCATCTGCC
Run BLAST on NCBI

protein sequence of TCONS_00058113-protein

>TCONS_00058113-protein ID=TCONS_00058113-protein|Name=TCONS_00058113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
MQHTLSSIEEEKLRREIGESEITEEALLKLLKITVFMIKKHWAHTYNYKD
FVEFVSFDLGDAVLKKYMELAESHKNATYLWTSTVVQLVKVISEWMKEET
LEELRNCEDFTLLLDKSTDDSNRSELCLQVRIVKGGEIQNHFLDLLQLKR
GDARSIFDSIVEYCQKNEINLDHARFGGMDGCTVMSGEHNGLKALLGNIT
PHFIYIHCRNHRLALCFAHLIPEFKEFENFDGLLLNLYLLLKKSTVKQSI
FDEVQKAYNLTSLKLIKAAVTRWLSHGQAGQRVLDLYEALIAALDEIFLR
KHEPAVRGLRDDLIKPTTIATLCILTDVIMMTNTMQKFLQSSRLNFLDIP
REKEKLIEKLNAKYNSPSA
Run BLAST on NCBI

transcript from alignment at scaffold_306:31863..33992+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058113 ID=TCONS_00058113|Name=TCONS_00058113|organism=Clytia hemisphaerica|type=transcript|length=2130bp|location=Sequence derived from alignment at scaffold_306:31863..33992+ (Clytia hemisphaerica)
tttttggacctaccgggaggtcctttaatttgaccgttgtccgttcgtct
gttacaagcttttctcgggattggctcattagtttttttttattttttgc
acaatgatacaaaatggcaatgcctgaaaagtgacggagcccgatttgtg
aaaaaaattcctggggggcaaatttggaaAAGAAGCTGTTAAAAGCCTCA
CTGACCACCCAAAACGCTATTTGGAAGGACATGAAAATTCGAAGAAACAT
CAAGATTCCGTCAAAGAATACGAAGGTGTGTACATCAAACATATATCAGG
ACTCTTCATAACTCGGATATTGACAGACATTTTCCAACTATATGACCTTT
ATCACCTAAATATCCACATGTTCTTCTTATTTTTGACGTTATATTACCAT
TCTCGACTCacttttattatcttttttatttttgctttcaTAGAGTACAT
GAACGTCTATAAAAACAGTAACGAAAGATCTTACATTACACCGGTTACAA
GTAACTTGACAATGACAATAACTATGACAATGACACATTTGCACCCTTAT
GCACTATAAAGCCTCGACAAAGTACTCTGAAACAATGCCAACAATTTACA
ACTTTTATTGCTCTAAGGTAGAATGCTGATGTCAATTGTCAGGCTTTCTA
ATATTTCATCATTCACAATTATTTTCTCGATTTATTGGCTCATAAACTTT
AGTTGGCGTATCTTTAGATACaccctttttataagaatatcgtaTTTTGG
TTGAGGTAAAAAATGTAGGCAATTTTCACTCTGATATTCTTAGATTTGAT
TCTTGTAGGAAAGGCGTgtaattttaaaatacatttCGTTCAATCTATTN
tcccagttggcacacaacgttattttaacgttcacataacgttatatggg
cgttctgaacgttagatggacgttgaaacaacgttgtgtccCAGCTGGGA
TAGATTTGATTCTTGTAGGAAAGGCGTGTAATTATAAAATACATTTCGTT
CAATCTATTTTACAGAATTCAAGATGCAACACACTTTATCAAGTATTGAA
GAGGAAAAACTACGGAGAGAGATTGGAGAATCCGAGATAACAGAAGAAGC
TCTTCTCAAGCTTCTGAAAATAACAGTGTTTATGATTAAAAAACACTGGG
CCCATACATACAACTACAAGGACTTTGTTGAGTTTGTTAGTTTTGATCTA
GGCGACGCTGTCTTGAAGAAGTACATGGAACTTGCGGAGTCACATAAAAA
TGCAACTTATCTCTGGACTTCCACTGTCGTTCAACTTGTTAAAGTCATCA
GTGAATGGatgaaagaagagactctagaAGAATTAAGGAACTGCGAAGAT
TTCACACTTTTACTTGACAAGTCAACTGATGATAGTAACAGATCTGAGCT
TTGTCTTCAAGTGAGAATTGTAAAAGGAGGAgaaattcaaaatcattttc
ttgaCCTACTTCAACTTAAACGAGGAGACGCTCGCAGCATCTTTGATTCC
ATTGTTGAATATTGTCAGAAAAATGAGATCAACTTAGATCACGCAAGATT
TGGTGGAATGGATGGTTGCACTGTCATGTCTGGTGAGCATAACGGACTCA
AAGCTCTTCTTGGGAACATTACTCCACACTTTATTTATATACATTGTCGT
AACCACCGTCTTGCATTGTGTTTTGCACATTTAATTCCAGAGTTCAAAGA
GTTCGAAAATTTTGATGGGTTACTTTTGAATCTCTATCTATTACTTAAAA
AAAGTACCGTTAAACAGTCAATTTTCGACGAGGTTCAAAAGGCATACAAC
TTAACATCCCTCAAATTGATCAAAGCAGCCGTAACTCGCTGGTTAAGTCA
TGGTCAAGCTGGTCAAAGAGTATTAGACCTTTACGAGGCTTTGATTGCTG
CACTTgatgaaatattcttacggaaACACGAACCAGCAGTGAGGGGTTTA
CGTGACGATCTTATCAAGCCAACCACAATAGCTACTCTTTGCATTTTAAC
TGATGTAATTATGATGACAAACACAATGCAAAAATTTCTACAGTCTTCAC
GGCTCAATTTCTTGGATATACccagagagaaagaaaaattaattgaaaag
tTGAACGCTAAATATAACAGCCCATCTGCC

Coding sequence (CDS) from alignment at scaffold_306:31863..33992+

>TCONS_00058113 ID=TCONS_00058113|Name=TCONS_00058113|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_306:31863..33992+ (Clytia hemisphaerica)
ATGCAACACACTTTATCAAGTATTGAAGAGGAAAAACTACGGAGAGAGAT
TGGAGAATCCGAGATAACAGAAGAAGCTCTTCTCAAGCTTCTGAAAATAA
CAGTGTTTATGATTAAAAAACACTGGGCCCATACATACAACTACAAGGAC
TTTGTTGAGTTTGTTAGTTTTGATCTAGGCGACGCTGTCTTGAAGAAGTA
CATGGAACTTGCGGAGTCACATAAAAATGCAACTTATCTCTGGACTTCCA
CTGTCGTTCAACTTGTTAAAGTCATCAGTGAATGGatgaaagaagagact
ctagaAGAATTAAGGAACTGCGAAGATTTCACACTTTTACTTGACAAGTC
AACTGATGATAGTAACAGATCTGAGCTTTGTCTTCAAGTGAGAATTGTAA
AAGGAGGAgaaattcaaaatcattttcttgaCCTACTTCAACTTAAACGA
GGAGACGCTCGCAGCATCTTTGATTCCATTGTTGAATATTGTCAGAAAAA
TGAGATCAACTTAGATCACGCAAGATTTGGTGGAATGGATGGTTGCACTG
TCATGTCTGGTGAGCATAACGGACTCAAAGCTCTTCTTGGGAACATTACT
CCACACTTTATTTATATACATTGTCGTAACCACCGTCTTGCATTGTGTTT
TGCACATTTAATTCCAGAGTTCAAAGAGTTCGAAAATTTTGATGGGTTAC
TTTTGAATCTCTATCTATTACTTAAAAAAAGTACCGTTAAACAGTCAATT
TTCGACGAGGTTCAAAAGGCATACAACTTAACATCCCTCAAATTGATCAA
AGCAGCCGTAACTCGCTGGTTAAGTCATGGTCAAGCTGGTCAAAGAGTAT
TAGACCTTTACGAGGCTTTGATTGCTGCACTTgatgaaatattcttacgg
aaACACGAACCAGCAGTGAGGGGTTTACGTGACGATCTTATCAAGCCAAC
CACAATAGCTACTCTTTGCATTTTAACTGATGTAATTATGATGACAAACA
CAATGCAAAAATTTCTACAGTCTTCACGGCTCAATTTCTTGGATATACcc
agagagaaagaaaaattaattgaaaagtTGAACGCTAAATATAACAGCCC
ATCTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036626XLOC_036626Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058113-proteinTCONS_00058113-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058113-exon-scaffold_306-1491911889:31863..32694TCONS_00058113-exon-scaffold_306-1491911889:31863..32694Clytia hemisphaericaexon
TCONS_00058113-exon-scaffold_306-1510915933:31863..32694TCONS_00058113-exon-scaffold_306-1510915933:31863..32694Clytia hemisphaericaexon
TCONS_00058113-exon-scaffold_306-1575043694:31863..32694TCONS_00058113-exon-scaffold_306-1575043694:31863..32694Clytia hemisphaericaexon
TCONS_00058113-exon-scaffold_306-1491911889:32855..33992TCONS_00058113-exon-scaffold_306-1491911889:32855..33992Clytia hemisphaericaexon
TCONS_00058113-exon-scaffold_306-1510915933:32855..33992TCONS_00058113-exon-scaffold_306-1510915933:32855..33992Clytia hemisphaericaexon
TCONS_00058113-exon-scaffold_306-1575043694:32855..33992TCONS_00058113-exon-scaffold_306-1575043694:32855..33992Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_306supercontigscaffold_306:31863..33992 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0101251	0.049233	0.0347434	0.0566877	0.366775	0.966718	0.571179	1.5339	0.390098	0.414254	2.30945e-09	1.04067	1.25996	1.34808	0.0116825	0.012476	0	0.0481767	0.0336533	0.0116822	0.0403139	0.0293231	0.0117062	0.0213896	0.9417	1.01393	0	0.0151525	0	0.0233396
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025398DUF4371
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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