TCONS_00058131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058131
Unique NameTCONS_00058131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058131 ID=TCONS_00058131|Name=TCONS_00058131|organism=Clytia hemisphaerica|type=transcript|length=679bp
ATATCACCACTCCACATTACATCACGTGGGGTATCGAAAACCGATTAACA
TTGATCCGCGTTATCGCCCGAGGCGCCGGTAAAGCTACATATCTGGAGAA
CCGGTTACCCGGGGCAACCATGAATCCGTATCTTGCACTGGCCGGTATGG
TTGCTGCCGGTATTGATGGTATCCGGAACAAAATCGAATTACCGGCTCCT
GGAAATACGGAAAATGAATTCGGAGTTTTGCCAGGTACTCTTGAAGAGGC
TTTGGATGCACTGAAGAGTAGTAGTGTCATGCGCGAGCATCTTGGTGATG
AATTTGTCAATTGGTTTGTGTGTGCCAAGGAGAAAGAAATCGAAGTCTTG
AATGAATACACAGATAAGAATGGGGGCGATTCTTTCCAAACTGAAGTTGA
CTTCTATTCCAAATGGATCTAAATTGTGTTTTAATGTTACTGTTTTATTT
TAATATCTTTAtctggaaaaaaagaaagaaagaaaagactGTATTCTAAA
AGCTAATCACGTGTCAAAGAGACATTATAAGGAACTATCAATTCTTGGAA
ATGAAAATGTAgaatagaaatattttaaatttatatGATAAAGCAAAGAA
AACACCACACTGCATTTTATAGATGTAAAAGGGGAGCTGGCCATAATAGG
GAAACTACCTTTTTGAAGGAACAATCTTT
Run BLAST on NCBI

transcript from alignment at scaffold_307:133824..138467+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058131 ID=TCONS_00058131|Name=TCONS_00058131|organism=Clytia hemisphaerica|type=transcript|length=4644bp|location=Sequence derived from alignment at scaffold_307:133824..138467+ (Clytia hemisphaerica)
ATATCAGTAAGTCTTGTGACAAATACCCATAATGCCCTCGCAAAATTAAA
ACCCAAAATTTCTAAGGTGTTCAAAAGGTTTTCTCGAGTAAGTCTGCCAC
CACATTGGGCGACCCAAAAGGTTCCTCTTTTGACATACCAAAAGGTATGG
GAGGTGCCACACTCCGTTTCTTCACTACGTCTTTTCTCTCGAATACCCAT
TTTctagtaaaacaaaaaatttcagatGTCTCCTTAGCCGGTGACTACAG
CATAATAAAATCACTCAAAAGCTCTTACCTCAAAAGTTTAGCAGCTTTGA
TTTTACATCGAATAGCCTATCGTTTGAAGTCTTTCAACCTTTAAAAACGG
GATAGAAAACCTTAGAATTGAAAAGAAACTCAATACTCCCGACACGGTTA
CTTTTGAATAATAAcgtaattttattaaaataatatCACGTTGTCAACAG
AACAAAGCATTGAGCTTTAAGCCCTGAAGGAATCTGTTGGAACCTCTTTC
TGTCTGGGCTTTAAACCCAGTTGAATAAAGAACCCGAACCACTCCAGCCT
TCTAAACAGTTATAAATATATAAACATACTCACCGTGAATAAATTCTTTT
TTAGCCACTCCACATTACATCACATGGGGTATCGAAAACCGATTAACATT
GATTCGTGTTATTGCTCGAGGTGCTGGTAAAGCTACATATCTAGAAAACC
GGTTACCCGGGGCAACCATGAATCCGTATCTTGCACTGGCTGGTATGGTT
GCTGCCGGTATTGATGGTATCCGGAACAAAATCGAATTACCGGCTCCTGG
AAATACGGAAAATGAATTCGGAGTTTTGCCAGGTACTCTTGAAGAGGCTT
TGGATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNATTTTCTTCTAAACACATgcaaaatcaggcaaaaactTGC
TTTCTTGAACAAAGTAGCGCTTTTTTGAACGAAGTAGCCTTACTGTCAAG
AATGATTGTGAATAATCGCtaggtaggaaattaaaatgctagggtgaaaa
gtttccttttgagttgttcttcaaaatgaacATTATTTTGGGACCCCGGT
CCAGGCCCTGCGATGCCGGTTTTGGTCCATAGGCTAGGGCTAAGTAGAAG
GTTTGAAAATCTTCAATATTCTTAAtataaatatttctttataaattaaa
atgaaaaacaagcGATGTACCAGATCTCATTCTTTAATATATAAAGCTCG
CGTTTAAAAATCTCAATATTTACAAAATCACACAAAATCATACAAAAAAC
GGTCCCAAAAACCAACAGCCTGAGAAAAATATATTAGATTTCTATAATAC
AAGTTTGTAGTGCATAAAAATTACACTATAATAAAATTGTTAAGGCGTAG
CAATTATTGAAAAAGCAATCATTGGGAAGCTTGGAATGTCTTAACAATAA
TTGTATAGACCAATGAAAATGTAGCGAAAAGCACAGATGATCATTacaga
tttttgtttatttgaccAGAAAGTTACCAATAGCTAGGATACCATATGAG
ATAATTTAAGGATATGTTGTGTATGAATAGTTGTAAACAGTATCATTAAA
AATGTAATATATAAATGTGCATGTGATTAAAAGGGTTAGTTATAAACATT
ACAATTACATACAAAATAAGCCACGAATaaatcatttcatttcatttata
tatataaaaaatttcccccaaaaaatgAGTCGGTCAATAAACAGGGTAAg
gtatgaagaaaaagaaaatacaaatcttcctaaaaaaatactgtataaag
gcttggggacacaagaagttttttttcgcatTAGTGCAATGCAACATACT
TCATctcaccaacctgaaacgctttctcgtgtcttcaccccatttttctt
tcgaccaataaaagtgaaatctcacttttgtccctgggacagtGGAACAA
AATtaattcgaatcaattttgctccattgtcccaggggcAAAagcagcgt
gtcttttgggtatttccctcactttttgtcccatgaaacaaaaacaaaaa
accatggggaacgcactttttttcttgtgttgNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAATTGAAAAGAAACTCAA
TACTCCCGACACGGTTACTTTTGAATAATAACGTAATTTTGTTAAAATAA
TATCACGTTGTCAACAGAACAAAGCATTGAGCTTTAAGCCCTGAAGGAAT
CTGTTGGAACCTCTTTCTGTCTGGGCTTTAAACTCAGTTGAATAAAGATC
CCGAACCACTCCAGCCTTCTAAACAGTTATAAATATATAAACACACTCAC
CGTGAATAAATTCATTTTTAGCCACTCCACATTACATCACGTGGGGTATC
GAAAACCGATTAACATTGATCCGCGTTATCGCCCGAGGCGCCGGTAAAGC
TACATATCTGGAGAACCGGTTACCCGGGGCAACCATGAATCCGTATCTTG
CACTGGCCGGTATGGTTGCTGCCGGTATTGATGGTATCCGGAACAAAATC
GAATTACCGGCTCCTGGAAATACGGAAAATGAATTCGGAGTTTTGCCAGG
TACTCTTGAAGAGGCTTTGGATGCACTGAAGAGTAGTAGTGTCATGCGCG
AGCATCTTGGTGATGAATTTGTCAATTGGTTTGTGTGTGCCAAGGAGAAA
GAAATCGAAGTCTTGAATGAATACACAGATAAGAATGGGGGCGATTCTTT
CCAAACTGAAGTTGACTTCTATTCCAAATGGATCTAAATTGTGTTTTAAT
GTTACTGTTTTATTTTAATATCTTTAtctggaaaaaaagaaagaaagaaa
agactGTATTCTAAAAGCTAATCACGTGTCAAAGAGACATTATAAGGAAC
TATCAATTCTTGGAAATGAAAATGTAgaatagaaatattttaaatttata
tGATAAAGCAAAGAAAACACCACACTGCATTTTATAGATGTAAAAGGGGA
GCTGGCCATAATAGGGAAACTACCTTTTTGAAGGAACAATCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036637XLOC_036637Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058131-exon-scaffold_307-1491911889:133824..133829TCONS_00058131-exon-scaffold_307-1491911889:133824..133829Clytia hemisphaericaexon
TCONS_00058131-exon-scaffold_307-1510915933:133824..133829TCONS_00058131-exon-scaffold_307-1510915933:133824..133829Clytia hemisphaericaexon
TCONS_00058131-exon-scaffold_307-1575043694:133824..133829TCONS_00058131-exon-scaffold_307-1575043694:133824..133829Clytia hemisphaericaexon
TCONS_00058131-exon-scaffold_307-1491911889:134428..134446TCONS_00058131-exon-scaffold_307-1491911889:134428..134446Clytia hemisphaericaexon
TCONS_00058131-exon-scaffold_307-1510915933:134428..134446TCONS_00058131-exon-scaffold_307-1510915933:134428..134446Clytia hemisphaericaexon
TCONS_00058131-exon-scaffold_307-1575043694:134428..134446TCONS_00058131-exon-scaffold_307-1575043694:134428..134446Clytia hemisphaericaexon
TCONS_00058131-exon-scaffold_307-1491911889:137814..138467TCONS_00058131-exon-scaffold_307-1491911889:137814..138467Clytia hemisphaericaexon
TCONS_00058131-exon-scaffold_307-1510915933:137814..138467TCONS_00058131-exon-scaffold_307-1510915933:137814..138467Clytia hemisphaericaexon
TCONS_00058131-exon-scaffold_307-1575043694:137814..138467TCONS_00058131-exon-scaffold_307-1575043694:137814..138467Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_307supercontigscaffold_307:133824..138467 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0467345	0.0736093	0	0	0.635024	0.13968	0.419027	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0173586
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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