TCONS_00058134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058134
Unique NameTCONS_00058134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058134 ID=TCONS_00058134|Name=TCONS_00058134|organism=Clytia hemisphaerica|type=transcript|length=679bp
ATTCGGTCGAATACAAAGAATCACATCTTTTTTGTTCCGACATTTTGTAT
TTGTGAACATGCAGCCAGTCTTTGCCTAGAAATTCcttcaaatctttaaa
aagagtATTAATTGGAACAATGAGTTGCATGACCAGTGAAAAAGGTATAA
CAAATCATTTTTCTCAGAATTCGATATAATAgaaaaatcgaaagtgaaag
ttttGATACAATTATTGATTAATTAgactttaatttaaatttttataatt
ttttaataacttttaaCTTTCGCCTGAAGATTGTCACCAAAGTGGCATTt
ctgccagtagcagaataaaaaagtgtcttttaacagaattttttttaatg
caaTGATTCTGATGATGATGGTACACAGGAAAAAGTTTGTAAGTTGACAG
TTGATAAGGATGATTCCAGCAGTCAGGGAAATCCCTCAATTGCGGTATAC
TGCAATTGCGGTAGTTTTCATTCGTGTTTAGCCTACAAAGGCTTATAACG
actacatatagtgctggtcgacaaagataaacaaacatcgactATAAAAA
ATCGTACGAGAAGAAAGCTTTTCNNNNNNNNNNNNNNNNNNtgtttaaga
taaaaactgcaattattgctcttttcggaaattattgccgaaaacggcaa
tttttttaacgatgaaatgctgaatcagt
Run BLAST on NCBI

transcript from alignment at scaffold_307:270141..270819+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058134 ID=TCONS_00058134|Name=TCONS_00058134|organism=Clytia hemisphaerica|type=transcript|length=679bp|location=Sequence derived from alignment at scaffold_307:270141..270819+ (Clytia hemisphaerica)
ATTCGGTCGAATACAAAGAATCACATCTTTTTTGTTCCGACATTTTGTAT
TTGTGAACATGCAGCCAGTCTTTGCCTAGAAATTCcttcaaatctttaaa
aagagtATTAATTGGAACAATGAGTTGCATGACCAGTGAAAAAGGTATAA
CAAATCATTTTTCTCAGAATTCGATATAATAgaaaaatcgaaagtgaaag
ttttGATACAATTATTGATTAATTAgactttaatttaaatttttataatt
ttttaataacttttaaCTTTCGCCTGAAGATTGTCACCAAAGTGGCATTt
ctgccagtagcagaataaaaaagtgtcttttaacagaattttttttaatg
caaTGATTCTGATGATGATGGTACACAGGAAAAAGTTTGTAAGTTGACAG
TTGATAAGGATGATTCCAGCAGTCAGGGAAATCCCTCAATTGCGGTATAC
TGCAATTGCGGTAGTTTTCATTCGTGTTTAGCCTACAAAGGCTTATAACG
actacatatagtgctggtcgacaaagataaacaaacatcgactATAAAAA
ATCGTACGAGAAGAAAGCTTTTCNNNNNNNNNNNNNNNNNNtgtttaaga
taaaaactgcaattattgctcttttcggaaattattgccgaaaacggcaa
tttttttaacgatgaaatgctgaatcagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036639XLOC_036639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058134-exon-scaffold_307-1491911889:270141..270819TCONS_00058134-exon-scaffold_307-1491911889:270141..270819Clytia hemisphaericaexon
TCONS_00058134-exon-scaffold_307-1510915933:270141..270819TCONS_00058134-exon-scaffold_307-1510915933:270141..270819Clytia hemisphaericaexon
TCONS_00058134-exon-scaffold_307-1575043694:270141..270819TCONS_00058134-exon-scaffold_307-1575043694:270141..270819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_307supercontigscaffold_307:270141..270819 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.549041	0.104914	0.348737	1.0901	0.230883	0.340904	0	0	0.129334	0.141153	0	0.56242	0.277387	0.326362	0.118481	0.504612	0.836601	0	1.01925	0.476168	0.256577	0.257127	0.222859	0.18532	0	0.539029	0	0.232524	0.673301	0.450643
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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