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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058139 ID=TCONS_00058139|Name=TCONS_00058139|organism=Clytia hemisphaerica|type=transcript|length=5173bpRun BLAST on NCBI transcript from alignment at scaffold_307:300718..358052+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058139 ID=TCONS_00058139|Name=TCONS_00058139|organism=Clytia hemisphaerica|type=transcript|length=57335bp|location=Sequence derived from alignment at scaffold_307:300718..358052+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058139 vs. Swiss-Prot (Human)
Match: PKHG5 (Pleckstrin homology domain-containing family G member 5 OS=Homo sapiens GN=PLEKHG5 PE=1 SV=3) HSP 1 Score: 323.939 bits (829), Expect = 2.016e-91 Identity = 163/376 (43.35%), Postives = 243/376 (64.63%), Query Frame = 2
Query: 1379 LEEKWTDVIDGPEDMTRSQKNQQEAIWELLSTEYKYVGKIRVILQVFRECLFSLQRDNFLREVDSERLFSNIQEIYNTNRIFWSEYLRHVVAETKRTREPIKPSQLLDSFARFEDLFDPYIKYCLEESHCVAYLKQLKETNENFNEYLLWCENQSECHRLKLADLLVKPMQRVTKYALLLKAVLQRTIDTDEILSLENMISQVDRFVSKINTTLRLRHEEQKLKTVLNRLENYCPIE-ATEEVDKVIQDYCNLDLHQKVPGLPEDEQRCILLDGSMKMIE-KQGRLDVQVFLFTDVLLITKAKKNGEKFRIIRPPYRLNKVVIYPSSQFGSFILIYLNEYGVLVNAFTLQVQNTELTK-WMQAIERAKRRYQAARS 2497
LE+ W ++IDG E +TR Q +QQEA+WELL TE Y+ K+RVI+ +F CL +LQ L EV++ERLFSNI EI +R W+ + V+ + +RTR ++P L F F LF PYI+YC+EE C+ Y++ L N+ F Y+ W E +C RLKL+D+L KP QR+TKY LLLK+VL++T + ++ MI V+RF+ +N +R R E Q+L V++R++ Y +E +++EVDK+++++ +LDL +PG +E R +LL+GS++M E K ++DV FLFTD+LL+TKA K E+ R+IRPP ++K+V GSF+LIYLNE+ V A+T Q L + W+ I A+ + Q R+
Sbjct: 372 LEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEASYIRKLRVIINLFLCCLLNLQESGLLCEVEAERLFSNIPEIAQLHRRLWASVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLLRDNDLFRAYITWAEKHPQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTEEPRAKEAVVAMIGSVERFIHHVNACMRQRQERQRLAAVVSRIDAYEVVESSSDEVDKLLKEFLHLDLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTRVIRPPLLVDKIVCRELRDPGSFLLIYLNEFHSAVGAYTFQASGQALCRGWVDTIYNAQNQLQQLRA 747 HSP 2 Score: 90.8929 bits (224), Expect = 4.135e-18 Identity = 72/271 (26.57%), Postives = 120/271 (44.28%), Query Frame = 2
Query: 404 EEEGRLCEGRKCSELPPQHRHIATKICHHSDCQALNNMNPLLLCPECDEQNHQEVDFISHLRFDLPSSTTTPINLHRKTSMKSNHSDDSGTEEDSDASYRFDKKNRSYSSARRFFNISANKNKGRLKKLQSFDQQQESPEDCFTLQLYDQDENL-LAAESVSVKKGRTLKEAIGPLLENYNVNLDTHSIFLESSKTPLRLDFITAPLAGNTLHVKATKKMQVDERIVKLMQNVDEQKQPSQRQKKTIMSIMSNDDSQAQIKTASLPASNAR 1213
E++G C+ C + + A K+CHH+DCQ L+ PL LC CD + H + + H+RFDLP + L R S +S T D ++ + R+ + +K K R + + ++CFTL+ D N+ + E V K ++L E + P+ E + L I+L+ S TPL L F G+ L VKA K + ++ + M++ P R T + D+Q++ ++ + A R
Sbjct: 8 EKKGLRCQNPACMD-----KGRAAKVCHHADCQQLHRRGPLNLCEACDSKFHSTMHYDGHVRFDLPPQGSV---LARNVSTRSCPPR---TSPAVDLEEEEEESSVDGKGDRKSTGLKLSKKKARRR------HTDDPSKECFTLKF---DLNVDIETEIVPAMKKKSLGEVLLPVFERKGIALGKVDIYLDQSNTPLSLTFEAYRFGGHYLRVKAPAKPGDEGKVEQGMKDSKSLSLPILRPAGTGPPALERVDAQSRRESLDILAPGRR 258 The following BLAST results are available for this feature:
BLAST of TCONS_00058139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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