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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058143 ID=TCONS_00058143|Name=TCONS_00058143|organism=Clytia hemisphaerica|type=transcript|length=2453bpRun BLAST on NCBI transcript from alignment at scaffold_307:307153..352974+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058143 ID=TCONS_00058143|Name=TCONS_00058143|organism=Clytia hemisphaerica|type=transcript|length=45822bp|location=Sequence derived from alignment at scaffold_307:307153..352974+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00058143 vs. Swiss-Prot (Human)
Match: PKHG5 (Pleckstrin homology domain-containing family G member 5 OS=Homo sapiens GN=PLEKHG5 PE=1 SV=3) HSP 1 Score: 237.269 bits (604), Expect = 1.565e-65 Identity = 115/266 (43.23%), Postives = 174/266 (65.41%), Query Frame = 1
Query: 1657 LEEKWTDVIDGPEDMTRSQKNQQEAIWELLSTEYKYVGKIRVILQVFRECLFSLQRDNFLREVDSERLFSNIQEIYNTNRIFWSEYLRHVVAETKRTREPIKPSQLLDSFARFEDLFDPYIKYCLEESHCVAYLKQLKETNENFNEYLLWCENQSECHRLKLADLLVKPMQRVTKYALLLKAVLQRTIDTDEILSLENMISQVDRFVSKINTTLRLRHEEQKLKTVLNRLENYCPIE-ATEEVDKVIQDYCNLDLHQKVPGLPEDE 2451
LE+ W ++IDG E +TR Q +QQEA+WELL TE Y+ K+RVI+ +F CL +LQ L EV++ERLFSNI EI +R W+ + V+ + +RTR ++P L F F LF PYI+YC+EE C+ Y++ L N+ F Y+ W E +C RLKL+D+L KP QR+TKY LLLK+VL++T + ++ MI V+RF+ +N +R R E Q+L V++R++ Y +E +++EVDK+++++ +LDL +PG +E
Sbjct: 372 LEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEASYIRKLRVIINLFLCCLLNLQESGLLCEVEAERLFSNIPEIAQLHRRLWASVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLLRDNDLFRAYITWAEKHPQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTEEPRAKEAVVAMIGSVERFIHHVNACMRQRQERQRLAAVVSRIDAYEVVESSSDEVDKLLKEFLHLDLTAPIPGASPEE 637 HSP 2 Score: 91.6633 bits (226), Expect = 9.212e-19 Identity = 73/275 (26.55%), Postives = 121/275 (44.00%), Query Frame = 1
Query: 670 QIVKEEEGRLCEGRKCSELPPQHRHIATKICHHSDCQALNNMNPLLLCPECDEQNHQEVDFISHLRFDLPSSTTTPINLHRKTSMKSNHSDDSGTEEDSDASYRFDKKNRSYSSARRFFNISANKNKGRLKKLQSFDQQQESPEDCFTLQLYDQDENL-LAAESVSVKKGRTLKEAIGPLLENYNVNLDTHSIFLESSKTPLRLDFITAPLAGNTLHVKATKKMQVDERIVKLMQNVDEQKQPSQRQKKTIMSIMSNDDSQAQIKTASLPASNAR 1491
Q E++G C+ C + + A K+CHH+DCQ L+ PL LC CD + H + + H+RFDLP + L R S +S T D ++ + R+ + +K K R + + ++CFTL+ D N+ + E V K ++L E + P+ E + L I+L+ S TPL L F G+ L VKA K + ++ + M++ P R T + D+Q++ ++ + A R
Sbjct: 4 QSPAEKKGLRCQNPACMD-----KGRAAKVCHHADCQQLHRRGPLNLCEACDSKFHSTMHYDGHVRFDLPPQGSV---LARNVSTRSCPPR---TSPAVDLEEEEEESSVDGKGDRKSTGLKLSKKKARRR------HTDDPSKECFTLKF---DLNVDIETEIVPAMKKKSLGEVLLPVFERKGIALGKVDIYLDQSNTPLSLTFEAYRFGGHYLRVKAPAKPGDEGKVEQGMKDSKSLSLPILRPAGTGPPALERVDAQSRRESLDILAPGRR 258 The following BLAST results are available for this feature:
BLAST of TCONS_00058143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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