TCONS_00058150 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058150
Unique NameTCONS_00058150
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2113

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058150 ID=TCONS_00058150|Name=TCONS_00058150|organism=Clytia hemisphaerica|type=transcript|length=2113bp
catatttttgactttcttttatCATGTTCCCACTAAGCTCCAAACAACAT
TTGAGGTCGTACTAGTTTTGAAAATCCAGAGTAAAAAAATAAAGGATTTT
GACAGCGACCAATCATAATGTGTTCTTGTTTTCGCTTCATGCAATATGTT
GTCAGTGTGTTGGTCTTATTAAGTGCAGGAGCCTTCATTCTATGTGGAGT
GGTTAATTACTGGTGGGTTACTGACAATGTCATCATCACAACAGAAACAG
GTTTATGGAAATCATGCACAAAGACTCTTCTGACCGGCAGAACCTGTTAT
CAAAGAGgaaatttatttgaatttgCCGAAGTCTTTGGCAGCCAAACACC
GATGCaTAAAGACATAATCATCATTGCGTTGATCGTTGCAGTGGTTACCG
GTCTCATTCATTTGATTTGTATGTCAGTCACCATGTGTCAACGGTATCCT
GCCAAATCCACCATCCTCATTGGTACCATTTTTCTGTTCTTCGGAgTTGC
TTCATCTGTCTTCGGCACAATTTGGGCGTTAGTTCAAATTTCACATGAAA
ACCAAGGGTGGGCTTTTTACGCCCTTTACGGTGGTGATGGTGCTATTATA
CTAGCTTTCATTTTCTCAATTGTCCTGTTGTGTTCGCGTGCACCAGGTGC
TTACCGCGCGACCAATAGAGATGATGAAATTGCAATGATTCCGCATTAAA
TCAAAATTGGCGCCTGATGGCTATTGCCATGGTGATGATACTCTTTAAAT
GTGAAGTCAACCAAGACAAGATATATTGCACTTATTTAGAGTGTATTCAA
CGTGGAGTAATGGGAGATTAATGTTAGGATTTTGTCCTTCTGTCCATAGT
GATCACGAGCTATATAATTTTAGATTGAAtggaaataataaatatattta
ttgttttcaacaAACACTTGACTTGAAAATTAGAGAGCTAAACAATCGAG
GAAGAATTTAGAAGCTcttaatcaaaaatatattatcaTAGTCAATTGTA
TATTTAATAGTAcgaatataaattttttaaacttatttGACCTTATCAAT
GGCAAACCTGCTATTAAGCATTTTTGAGATGATGAGATCATTTGAAGTGA
CTTCGGTAACTTCTCGGTGTTTTTGAAATTCCTTGCTGTTTTAGCATGGT
AAGATTTGAACAAGTACTAAGGGATTTTATTGATTAAAGCTACCTTTCGT
TTTTATATTTTCCTTTTATTCTGacacccttgtgtcacagacctgttGGA
ACCCCAATCCCACTGGAaactttggcaaaaatttcgtccccggtaggaaa
atacccGGGAATTTTCATCCgaaaaatcaatgtttaaaaGCCCTTCTCCA
AAATCATCCGCACTGGATCTTTTAAcctttaaacaataaaatttatatcC
CCATTTGAATctcgatagaaatttttatccccactaggGAAAAATGTTCc
gccggggctgtgagacaggggtgtattttgagttattattttttatttaa
tcatGAAATATAATGTAGAAAATAGcttcaaataaatattttacagataT
CTTGTAAacagaattttgaaatattttgacagtaaaatatttgaaaactt
tcaTACAATTTTTAGTGTTTGCGTGACTATACTAAGAGTGTAGAGACCCC
ATATATAGACCCACATGTTAGTTTTAAAAGGTTTGTAACTGGACATGCAT
AGTTCGAAAGTAATCTTTTTCAAAGGCGCTCAGCTACCCAGATTTTTTTG
ATAAGACTTCCAAAATGAGACTTTTGCACAAGAAGAATGGAATCAAGTAA
AGgaagaattatttcttttctattctTCAAACAAAGTCTTTTTCGTTGGT
GATGAGGCAGGTGGAAAAAAATAAGTCAAACTGTTTTTATTTcacatgct
gaatattttttcttaattttgaaaaatttgaaaatgttataaGATTTATT
TTAGACCAGTTGGTTTGTAAAATAGTAGCAAATTTACTAGATGAAATATC
TTGAAGTTATTGTAGACTCAATTGGGCCGTAAACTATGTATCTTTAAACG
CCTCAGGGTTCATGGACCTAATTTATAAGGAAATTCGCGAATATTCTTCC
ATAAACTGTTCTT
Run BLAST on NCBI

transcript from alignment at scaffold_307:43343..48611-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058150 ID=TCONS_00058150|Name=TCONS_00058150|organism=Clytia hemisphaerica|type=transcript|length=5269bp|location=Sequence derived from alignment at scaffold_307:43343..48611- (Clytia hemisphaerica)
CATATTTTTGACTTTCTTTTATCATGTTCCCACTAAGCTCCAAACAACAT
TTGAGGTCGTACTAGTTTTGAAAATCCAGGTGACTTGTTTAAAGTTTGTT
TTCCTCCCTCCAATGGAATATTTATCTAAGTTTCTTAGTTTTTAAAGGTT
ATTTGAGAGTCTTTGTTCCATCTTGCTTAAATTTAGTCGTTTATATTTAC
GTTCTTTTTGCTTGTTTATGTTGACATTAGCTTCTTTCTACAGTTGACCG
ACATGATTTTTTATAAAATCATTATATTATGTGTCTTGCTCGTAAGAGAG
AAATAGTGGATGTTGAGTAGGTTTTCAATTTCATGATTTAAGGATGAAAT
GTATTTTTGAGGCTTAGACGTTAGGCTTAGAAAACGATGACATTTTGTAT
TAAGGGNAAGCTCAGAGAAAACCACTTGATGATTCTTGTCTTAACCCTGT
TATACTTTAACTTAACAGGGCTAAACTATCTCCCTTACCTTATTTTGACA
TAAAAAACTGCCATACAAACAAATAATACTCTTTGTACCGCATCTGGATG
AATTCTTTTTCGCGTCAAAAATTTTCTTAGTAGGGGTTAGGGGGGGGGCG
AAAAAATATTGGGCCTTATGAGGGGGGGTTCGAAAATTTTTTCNGGGGGG
GGGGGTCCAATTTTTTTTGGGAAACTCAAGAGAAAATGTAGGAAGTCTAA
TTTCATAGTTTTACGTTTGAAGATTTCAAAAATTTTTCTGCCTTACGGCC
GACAACTCATAATTTATCTTATTGGATATATGTACATTTCATATTGGCAT
TATTTGGGCATCATCGGATCATCGCCTTGCCCTTTTGGTTTGTAAAATTG
AGNGACCGCTCCCTAACACTAAAAAATTTCAGTTATTTAACTTTAGTATC
AATGTTTGAGAATTCGAGAACTCGTCAAATGTTTCAGTTAGTTTGAATAA
TGATAAACTATCCCACCCCAGTCCCTGGTGGAATTTTTCCCAAAAACTGG
GGATAAAGATTTCTATCGAAATTCCATTGGGTAAATTAGCCAAATTCTAT
TCTTGTAAGCAAAAAGGAAATCCAGTTAGGATGATTTTGCAGTGCAATTA
TTTACATTGAATTTCGAATTGGGATGAAATGAAAGCCAATTTCACAGTGG
GGCTAAAACTTCAGAGTAACTTTTGCAATAGGACGAGATTTTGGCTGAAT
TTTCCAGAGGGGTGGTGTCCCGACGGGTTTTGGTCACTGGGTTTGTTTTA
TCAGCACGCAATATTACATGACGTTACGAACGTTATTGTTAAACGTTAAA
CAATGATTTTCGCTAGTTTGGAATCTCATACAGAGTCGACTTTCAACCTT
TATCTTAAAATGCAATTACCTACCGTATGTATTTTCAGAGTAAAAAAATA
AAGGATTTTGACAGCGACCAATCATAATGTGTTCTTGTTTTCGCTTCATG
CAATATGTTGTCAGTGTGTTGGTCTTATTAAGTGCAGGAGCCTTCATTCT
ATGTGGAGTGGTTAATTACTGGTGGGTTACTGACAATGTCATCATCACAA
CAGAAACAGGTGAGCTTAATCTTCCTTCGTATAGGCCATTCAGGGCCGAA
GTGAATTATGGGTAATCCTTGGTTAGACGTAAAAACATCCAAAACTTTAA
AACAACAAAGGTTGCTGTCCTGATTACCCGTGATTTCATTCACACTTTAT
GCACCCCTAGATTACTTGGTTTGCAAGCTGATAGCCGGTATGTCCGAGTC
AAAGTTCGAAAATCGACGCGAGAGAATTTTAAAAATTTTCTGACCTTTGA
AATTTTATGTTTTTAGAAAGATTAGTCGAGGTAGAGATTGATTATTCAAA
GTAATACAGGATCAAAAGCTTTAGGCTTTGTTTTGGAAATGGGAAATTTG
ACATCTGTTATCACTTTGCTGCTCCTTTTAATCATTTTGGTTTGCTCCTT
TTTAGGTTTATGGAAATCATGCACAAAGACTCTTCTGACCGGCAGAACCT
GTTATCAAAGAGGAAATTTATTTGAATTTGCCGAAGTCTTTGGCAGCCAA
ACACCGATGCGTAAGTTTTTGTGAATATCGATAAAATAAACACGCCCCTA
TCTCAGTGACTATCATAAAATTATCAACCGTTGGGAGGTGAAATTTATTT
AATTAAATGTGGATGTGATACGGGAAGGGATTTTTAATATCATGATACAC
CCCCTTCTCACAAAACCGGTGGGATTTTATCAGCCAGTTGGAGCAAAGAT
AACAAACCAAAACTTGATGAGGATTCATATTCCTATGTTTTTTATGGCAC
AATATTTTGCAGTGAGGATTGGCTTATCTAATTATTTTCAACGGGAAAAA
AAATTAGAGTATACAATCTTCCACTGGGGACGATATTTCGACCAATTTTC
CAGTGGGAAGGGCTCCCAATGAGTCTGTGAGAAGGGGGTTACATGGTGGC
TGATCTTCCTCCCGGTGAAGAGGGGATTCTATTTAATCTGTACTTTTTGT
AAATATTGTACAGAGGAACTGGTTCTGCCCTTACTTTTATTATACTGCTG
GCAAAAGAGTACCAGAAAACACCTATGCGCCTCATCTCATAACGTGAAGT
GAAACACTCATAAGTTCCCCGCAGAAAAATTGTATCTTTCATCTCTGAAA
CATCCTTGGTATTTTCCTAAAGCCAACTATGGCGTCTTAGAATAGTTTCT
TTATCGATATTTCTAAACCAATTAAAATACATTGCCTTGGCGACCAAGCC
CGTTGCTGAAGCAATTTTTTTCTATCCAATTTTTCGGATTCAGCAAATGG
GTTTTCGTCGCCAGGTTTTAGGCTACTACCAATACAGTTGAACTACAGTT
ATTGTAAAGATTGTAAATATTTCATTTCAGATAAAGACATAATCATCATT
GCGTTGATCGTTGCAGTGGTTACCGGTCTCATTCATTTGATTTGTATGTC
AGTCACCATGTGTCAACGGTATCCTGCCAAATCCACCATCCTCATTGGTA
CCATTTTTCTGTTCTTCGGAGGTAAGTTTCTTTTTTTTAGGTTTATCGCT
TGAACTTTATTAATTGTGTTTACTTGTAAAGCGTTTATCTTGGAATTTTT
ATCAATTAATTCCCAGGGAATTTTATTTCTGTTCTTATATTTCACTATAA
ATACAAAACTGACGAGGACTTTTAATGGTAGCAGTGGGATAAATGGATCA
GGGAAAAAATGCAATTATAGGCCTTTCTATGATCGCTTTAAGTGCCTCAT
TTTGAAACCATTATCAAGGTGATTAGATCCCTCGAGTCTTCCAATGTCTC
CTTCTGTGAATTATTAATTACCTTTTTAGAAATATTTTGAAAACGAGGCA
AGCGTTATACTCTTGACGTAATTTATGAAAAGGTCTATTGGAATAGAACA
ACTTTAGCTTTCCATGAGTTTTGGCTGTATATGCTCTAAAATAATGCCGA
AAAATTTGGTATTTCCGCTTAGCGGGACAAGTCGAGTGTGGTGTTTTAAG
GGAGTAAAATATTTTGTATTTCTAACATCAGCCATGGTTTTCGGCCGATT
TTGTCGGTCGATTTTTCCGTGCAGGGCTTGTGAGAAAGGATTGTCGTTTA
AGGTCCTGTAACAGACTTTCAAACTAATTTATTCATTTTTTCTTTCTCGC
AGTTGCTTCATCTGTCTTCGGCACAATTTGGGCGTTAGTTCAAATTTCAC
ATGAAAACCAAGGGTGGGCTTTTTACGCCCTTTACGGTGGTGATGGTGCT
ATTATACTAGCTTTCATTTTCTCAATTGTCCTGTTGTGTTCGCGTGCACC
AGGTGCTTACCGCGCGACCAATAGAGATGATGAAATTGCAATGATTCCGC
ATTAAATCAAAATTGGCGCCTGATGGCTATTGCCATGGTGATGATACTCT
TTAAATGTGAAGTCAACCAAGACAAGATATATTGCACTTATTTAGAGTGT
ATTCAACGTGGAGTAATGGGAGATTAATGTTAGGATTTTGTCCTTCTGTC
CATAGTGATCACGAGCTATATAATTTTAGATTGAATGGAAATAATAAATA
TATTTATTGTTTTCAACAAACACTTGACTTGAAAATTAGAGAGCTAAACA
ATCGAGGAAGAATTTAGAAGCTCTTAATCAAAAATATATTATCATAGTCA
ATTGTATATTTAATAGTACGAATATAAATTTTTTAAACTTATTTGACCTT
ATCAATGGCAAACCTGCTATTAAGCATTTTTGAGATGATGAGATCATTTG
AAGTGACTTCGGTAACTTCTCGGTGTTTTTGAAATTCCTTGCTGTTTTAG
CATGGTAAGATTTGAACAAGTACTAAGGGATTTTATTGATTAAAGCTACC
TTTCGTTTTTATATTTTCCTTTTATTCTGACACCCTTGTGTCACAGACCT
GTTGGAACCCCAATCCCACTGGAAACTTTGGCAAAAATTTCGTCCCCGGT
AGGAAAATACCCGGGAATTTTCATCCGAAAAATCAATGTTTAAAAGCCCT
TCTCCAAAATCATCCGCACTGGATCTTTTAACCTTTAAACAATAAAATTT
ATATCCCCATTTGAATCTCGATAGAAATTTTTATCCCCACTAGGGAAAAA
TGTTCCGCCGGGGCTGTGAGACAGGGGTGTATTTTGAGTTATTATTTTTT
ATTTAATCATGAAATATAATGTAGAAAATAGCTTCAAATAAATATTTTAC
AGATATCTTGTAAACAGAATTTTGAAATATTTTGACAGTAAAATATTTGA
AAACTTTCATACAATTTTTAGTGTTTGCGTGACTATACTAAGAGTGTAGA
GACCCCATATATAGACCCACATGTTAGTTTTAAAAGGTTTGTAACTGGAC
ATGCATAGTTCGAAAGTAATCTTTTTCAAAGGCGCTCAGCTACCCAGATT
TTTTTGATAAGACTTCCAAAATGAGACTTTTGCACAAGAAGAATGGAATC
AAGTAAAGGAAGAATTATTTCTTTTCTATTCTTCAAACAAAGTCTTTTTC
GTTGGTGATGAGGCAGGTGGAAAAAAATAAGTCAAACTGTTTTTATTTCA
CATGCTGAATATTTTTTCTTAATTTTGAAAAATTTGAAAATGTTATAAGA
TTTATTTTAGACCAGTTGGTTTGTAAAATAGTAGCAAATTTACTAGATGA
AATATCTTGAAGTTATTGTAGACTCAATTGGGCCGTAAACTATGTATCTT
TAAACGCCTCAGGGTTCATGGACCTAATTTATAAGGAAATTCGCGAATAT
TCTTCCATAAACTGTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036642XLOC_036642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058150-exon-scaffold_307-1575043694:48533..48611TCONS_00058150-exon-scaffold_307-1575043694:48533..48611Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1575043694:47053..47223TCONS_00058150-exon-scaffold_307-1575043694:47053..47223Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1575043694:46552..46656TCONS_00058150-exon-scaffold_307-1575043694:46552..46656Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1575043694:45591..45731TCONS_00058150-exon-scaffold_307-1575043694:45591..45731Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1575043694:43343..44959TCONS_00058150-exon-scaffold_307-1575043694:43343..44959Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1510915933:48533..48611TCONS_00058150-exon-scaffold_307-1510915933:48533..48611Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1510915933:47053..47223TCONS_00058150-exon-scaffold_307-1510915933:47053..47223Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1510915933:46552..46656TCONS_00058150-exon-scaffold_307-1510915933:46552..46656Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1510915933:45591..45731TCONS_00058150-exon-scaffold_307-1510915933:45591..45731Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1510915933:43343..44959TCONS_00058150-exon-scaffold_307-1510915933:43343..44959Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1491911889:48533..48611TCONS_00058150-exon-scaffold_307-1491911889:48533..48611Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1491911889:47053..47223TCONS_00058150-exon-scaffold_307-1491911889:47053..47223Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1491911889:46552..46656TCONS_00058150-exon-scaffold_307-1491911889:46552..46656Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1491911889:45591..45731TCONS_00058150-exon-scaffold_307-1491911889:45591..45731Clytia hemisphaericaexon
TCONS_00058150-exon-scaffold_307-1491911889:43343..44959TCONS_00058150-exon-scaffold_307-1491911889:43343..44959Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_307supercontigscaffold_307:43343..48611 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.0531	38.312	72.5512	78.4526	2.85194	2.17288	23.6383	22.1932	28.4942	28.9601	20.6703	17.9486	24.0215	20.2765	15.2691	13.5551	35.1989	43.5666	34.086	39.3833	45.0856	41.2878	35.5189	38.6587	18.167	14.6563	13.0253	9.09491	19.251	21.6661
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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